RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 CFDP1Q9UEE9 299 aaPredicted RBP17.44■□□□□ 0.38
USP3-202ENST00000380324 PLEKHD1A6NEE1 506 aa17.43■□□□□ 0.38
USP3-202ENST00000380324 ABCC5O15440 1437 aa17.43■□□□□ 0.38
USP3-202ENST00000380324 ZNF777Q9ULD5 760 aaPredicted RBP17.42■□□□□ 0.38
USP3-202ENST00000380324 CLASP1Q7Z460 1538 aa17.41■□□□□ 0.38
USP3-202ENST00000380324 CROCC2H7BZ55 1655 aa17.39■□□□□ 0.37
USP3-202ENST00000380324 ABCC10Q5T3U5 1492 aa17.38■□□□□ 0.37
USP3-202ENST00000380324 TRIM52Q96A61 297 aa17.38■□□□□ 0.37
USP3-202ENST00000380324 ADGBQ8N7X0 1667 aa17.37■□□□□ 0.37
USP3-202ENST00000380324 ROCK1Q13464 1354 aa17.37■□□□□ 0.37
USP3-202ENST00000380324 ABCC2Q92887 1545 aa17.35■□□□□ 0.37
USP3-202ENST00000380324 TONSLQ96HA7 1378 aa17.33■□□□□ 0.37
USP3-202ENST00000380324 DENND4BO75064 1496 aaPredicted RBP17.33■□□□□ 0.36
USP3-202ENST00000380324 PREX2Q70Z35 1606 aa17.3■□□□□ 0.36
USP3-202ENST00000380324 CDC42BPBQ9Y5S2 1711 aa17.3■□□□□ 0.36
USP3-202ENST00000380324 TIMELESSQ9UNS1 1208 aa17.3■□□□□ 0.36
USP3-202ENST00000380324 TTC37Q6PGP7 1564 aa17.3■□□□□ 0.36
USP3-202ENST00000380324 MIER1Q8N108 512 aa17.29■□□□□ 0.36
USP3-202ENST00000380324 NCOA1Q15788 1441 aa17.28■□□□□ 0.36
USP3-202ENST00000380324 ZCCHC11Q5TAX3 1644 aaKnown RBP17.27■□□□□ 0.36
USP3-202ENST00000380324 ADGRL2O95490 1459 aa17.27■□□□□ 0.36
USP3-202ENST00000380324 MPHOSPH9Q99550 1183 aa17.27■□□□□ 0.35
USP3-202ENST00000380324 FOXD1Q16676 465 aa17.26■□□□□ 0.35
USP3-202ENST00000380324 SAMD9LQ8IVG5 1584 aa17.26■□□□□ 0.35
USP3-202ENST00000380324 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.25■□□□□ 0.352e-7■■■□□ 16.1
USP3-202ENST00000380324 PPP1R15AO75807 674 aaPredicted RBP17.25■□□□□ 0.35
USP3-202ENST00000380324 C9orf84Q5VXU9 1444 aa17.25■□□□□ 0.35
USP3-202ENST00000380324 ANKRD30AQ9BXX3 1397 aa17.24■□□□□ 0.35
USP3-202ENST00000380324 SHANK2Q9UPX8 1470 aa17.24■□□□□ 0.35
USP3-202ENST00000380324 MYO5CQ9NQX4 1742 aa17.23■□□□□ 0.35
USP3-202ENST00000380324 ARHGAP5Q13017 1502 aa17.23■□□□□ 0.35
USP3-202ENST00000380324 HNRNPMP52272 730 aaKnown RBP eCLIP17.21■□□□□ 0.358e-7■■■■■ 27.1
USP3-202ENST00000380324 ARHGEF5Q12774 1597 aa17.21■□□□□ 0.35
USP3-202ENST00000380324 KCNH8Q96L42 1107 aa17.2■□□□□ 0.34
USP3-202ENST00000380324 SLC4A1APQ9BWU0 796 aaKnown RBP17.2■□□□□ 0.34
USP3-202ENST00000380324 SYCP2Q9BX26 1530 aa17.2■□□□□ 0.34
USP3-202ENST00000380324 KDM5BQ9UGL1 1544 aa17.2■□□□□ 0.34
USP3-202ENST00000380324 UHRF1BP1LA0JNW5 1464 aa17.2■□□□□ 0.34
USP3-202ENST00000380324 ANKRD50Q9ULJ7 1429 aa17.19■□□□□ 0.34
USP3-202ENST00000380324 MBD5Q9P267 1494 aa17.19■□□□□ 0.34
USP3-202ENST00000380324 PZPP20742 1482 aa17.18■□□□□ 0.34
USP3-202ENST00000380324 CCDC141Q6ZP82 1450 aa17.18■□□□□ 0.34
USP3-202ENST00000380324 TSPY4P0CV99 314 aa17.18■□□□□ 0.34
USP3-202ENST00000380324 TSPY10P0CW01 314 aa17.18■□□□□ 0.34
USP3-202ENST00000380324 YTHDC1Q96MU7 727 aaKnown RBP17.17■□□□□ 0.34
USP3-202ENST00000380324 HIRIP3Q9BW71 556 aaPredicted RBP17.17■□□□□ 0.34
USP3-202ENST00000380324 ACIN1Q9UKV3 1341 aaKnown RBP17.17■□□□□ 0.34
USP3-202ENST00000380324 KIF15Q9NS87 1388 aa17.15■□□□□ 0.34
USP3-202ENST00000380324 ANKRD30BQ9BXX2 1392 aa17.15■□□□□ 0.34
USP3-202ENST00000380324 RPRD2Q5VT52 1461 aaKnown RBP17.12■□□□□ 0.33
USP3-202ENST00000380324 CENPBP07199 599 aaPredicted RBP17.1■□□□□ 0.33
USP3-202ENST00000380324 L3MBTL2Q969R5 705 aa17.09■□□□□ 0.33
USP3-202ENST00000380324 NUP155O75694 1391 aa17.09■□□□□ 0.33
USP3-202ENST00000380324 TEX14Q8IWB6 1497 aa17.08■□□□□ 0.33
USP3-202ENST00000380324 KIAA1107Q9UPP5 1409 aa17.08■□□□□ 0.32
USP3-202ENST00000380324 PLCH2O75038 1416 aa17.08■□□□□ 0.32
USP3-202ENST00000380324 PKD2Q13563 968 aa17.07■□□□□ 0.32
USP3-202ENST00000380324 PLEKHH2Q8IVE3 1493 aa17.07■□□□□ 0.32
USP3-202ENST00000380324 MAST1Q9Y2H9 1570 aa17.07■□□□□ 0.32
USP3-202ENST00000380324 WDR7Q9Y4E6 1490 aa17.07■□□□□ 0.32
USP3-202ENST00000380324 ARHGEF12Q9NZN5 1544 aa17.06■□□□□ 0.32
USP3-202ENST00000380324 DDX10Q13206 875 aaKnown RBP17.06■□□□□ 0.32
USP3-202ENST00000380324 RSPH4AQ5TD94 716 aa17.06■□□□□ 0.32
USP3-202ENST00000380324 OSCARQ8IYS5 282 aa17.06■□□□□ 0.32
USP3-202ENST00000380324 ABCC1P33527 1531 aa17.05■□□□□ 0.32
USP3-202ENST00000380324 KDM5DQ9BY66 1539 aa17.05■□□□□ 0.32
USP3-202ENST00000380324 PLXNC1O60486 1568 aa17.04■□□□□ 0.32
USP3-202ENST00000380324 EFCAB2Q5VUJ9 269 aa17.02■□□□□ 0.32
USP3-202ENST00000380324 SCAF1Q9H7N4 1312 aaKnown RBP17.01■□□□□ 0.31
USP3-202ENST00000380324 FAM135AQ9P2D6 1515 aa17■□□□□ 0.31
USP3-202ENST00000380324 ASXL2Q76L83 1435 aa16.99■□□□□ 0.31
USP3-202ENST00000380324 TRAPPC8Q9Y2L5 1435 aa16.99■□□□□ 0.31
USP3-202ENST00000380324 UNC13BO14795 1591 aa16.98■□□□□ 0.31
USP3-202ENST00000380324 ABCA9Q8IUA7 1624 aa16.98■□□□□ 0.31
USP3-202ENST00000380324 ARAP3Q8WWN8 1544 aa16.97■□□□□ 0.31
USP3-202ENST00000380324 NBPF8Q3BBV2 869 aa16.97■□□□□ 0.31
USP3-202ENST00000380324 HSPA5P11021 654 aaKnown RBP16.96■□□□□ 0.31
USP3-202ENST00000380324 DUOX2Q9NRD8 1548 aa16.96■□□□□ 0.31
USP3-202ENST00000380324 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.96■□□□□ 0.31e-8■■■□□ 15.2
USP3-202ENST00000380324 FANCAO15360 1455 aa16.96■□□□□ 0.3
USP3-202ENST00000380324 EIF4G2P78344 907 aaKnown RBP eCLIP16.94■□□□□ 0.3
USP3-202ENST00000380324 ZNF326Q5BKZ1 582 aaKnown RBP16.93■□□□□ 0.3
USP3-202ENST00000380324 ZFYVE16Q7Z3T8 1539 aa16.93■□□□□ 0.3
USP3-202ENST00000380324 IQGAP3Q86VI3 1631 aa16.92■□□□□ 0.3
USP3-202ENST00000380324 ERBINQ96RT1 1412 aa16.92■□□□□ 0.3
USP3-202ENST00000380324 AFAP1Q8N556 730 aa16.92■□□□□ 0.3
USP3-202ENST00000380324 SPAG9O60271 1321 aaKnown RBP16.91■□□□□ 0.3
USP3-202ENST00000380324 NPM1P06748 294 aaKnown RBP eCLIP16.9■□□□□ 0.3
USP3-202ENST00000380324 ADGRL1O94910 1474 aa16.89■□□□□ 0.3
USP3-202ENST00000380324 WASHC2AQ641Q2 1341 aa16.88■□□□□ 0.29
USP3-202ENST00000380324 MAGI2Q86UL8 1455 aa16.88■□□□□ 0.29
USP3-202ENST00000380324 INO80Q9ULG1 1556 aaPredicted RBP16.87■□□□□ 0.29
USP3-202ENST00000380324 ATP7AQ04656 1500 aa16.87■□□□□ 0.29
USP3-202ENST00000380324 CCDC144AA2RUR9 1427 aa16.86■□□□□ 0.29
USP3-202ENST00000380324 GTF3C3Q9Y5Q9 886 aa16.86■□□□□ 0.29
USP3-202ENST00000380324 SCAPERQ9BY12 1400 aa16.85■□□□□ 0.29
USP3-202ENST00000380324 ANP32CO43423 234 aa16.85■□□□□ 0.29
USP3-202ENST00000380324 MYT1LQ9UL68 1186 aa16.85■□□□□ 0.29
USP3-202ENST00000380324 RTEL1-TNFRSF6BF6WH68 1400 aa16.84■□□□□ 0.29
USP3-202ENST00000380324 POLR1AO95602 1720 aaPredicted RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms