RNA–Protein interactions for RNA: ENST00000379237.6

USP6NL-202, Transcript of USP6 N-terminal like, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP6NL, Length 4,546 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-202ENST00000379237 CRBNQ96SW2 442 aa14.08□□□□□ -0.16
USP6NL-202ENST00000379237 SMG6Q86US8 1419 aaKnown RBP14.08□□□□□ -0.16
USP6NL-202ENST00000379237 RRBP1Q9P2E9 1410 aaKnown RBP14.06□□□□□ -0.16
USP6NL-202ENST00000379237 TPM2P07951 284 aa14.06□□□□□ -0.16
USP6NL-202ENST00000379237 CNTLNQ9NXG0 1405 aa14.06□□□□□ -0.16
USP6NL-202ENST00000379237 KIF21BO75037 1637 aa14.06□□□□□ -0.16
USP6NL-202ENST00000379237 DNTTIP2Q5QJE6 756 aaKnown RBP14.05□□□□□ -0.16
USP6NL-202ENST00000379237 PDCL3Q9H2J4 239 aa14.04□□□□□ -0.16
USP6NL-202ENST00000379237 ESPNB1AK53 854 aa14.03□□□□□ -0.16
USP6NL-202ENST00000379237 ZBTB7CA1YPR0 619 aa14.03□□□□□ -0.16
USP6NL-202ENST00000379237 CLCN1P35523 988 aa14.02□□□□□ -0.16
USP6NL-202ENST00000379237 KIAA1211Q6ZU35 1233 aa14.01□□□□□ -0.17
USP6NL-202ENST00000379237 MRE11P49959 708 aa14.01□□□□□ -0.17
USP6NL-202ENST00000379237 CENPQQ7L2Z9 268 aaPredicted RBP14.01□□□□□ -0.17
USP6NL-202ENST00000379237 L3MBTL2Q969R5 705 aa14□□□□□ -0.17
USP6NL-202ENST00000379237 CCDC7Q96M83 1385 aa13.99□□□□□ -0.17
USP6NL-202ENST00000379237 GOLGA6L22H0YM25 854 aa13.98□□□□□ -0.17
USP6NL-202ENST00000379237 FBLN2P98095 1184 aa13.98□□□□□ -0.17
USP6NL-202ENST00000379237 FOXD1Q16676 465 aa13.98□□□□□ -0.17
USP6NL-202ENST00000379237 PTMAP06454 111 aaKnown RBP13.97□□□□□ -0.17
USP6NL-202ENST00000379237 PANK2Q9BZ23 570 aa13.97□□□□□ -0.17
USP6NL-202ENST00000379237 ZHX1Q9UKY1 873 aaPredicted RBP13.97□□□□□ -0.17
USP6NL-202ENST00000379237 R3HCC1Q9Y3T6 440 aaKnown RBP13.97□□□□□ -0.17
USP6NL-202ENST00000379237 MAPKBP1O60336 1514 aa13.97□□□□□ -0.17
USP6NL-202ENST00000379237 FHAD1B1AJZ9 1412 aa13.96□□□□□ -0.17
USP6NL-202ENST00000379237 KTN1Q86UP2 1357 aaKnown RBP13.96□□□□□ -0.17
USP6NL-202ENST00000379237 XRCC6P12956 609 aaKnown RBP eCLIP13.96□□□□□ -0.18
USP6NL-202ENST00000379237 WDR43Q15061 677 aaKnown RBP eCLIP13.96□□□□□ -0.18
USP6NL-202ENST00000379237 PDE3BQ13370 1112 aa13.95□□□□□ -0.18
USP6NL-202ENST00000379237 MAP7D2Q96T17 732 aa13.95□□□□□ -0.18
USP6NL-202ENST00000379237 PRDM10Q9NQV6 1147 aa13.95□□□□□ -0.18
USP6NL-202ENST00000379237 TRAK2O60296 914 aa13.94□□□□□ -0.18
USP6NL-202ENST00000379237 KIF7Q2M1P5 1343 aa13.94□□□□□ -0.18
USP6NL-202ENST00000379237 MTUS2Q5JR59 1369 aa13.94□□□□□ -0.18
USP6NL-202ENST00000379237 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.94□□□□□ -0.18
USP6NL-202ENST00000379237 HSCBQ8IWL3 235 aa13.94□□□□□ -0.18
USP6NL-202ENST00000379237 KDM2AQ9Y2K7 1162 aa13.93□□□□□ -0.18
USP6NL-202ENST00000379237 BBXQ8WY36 941 aaPredicted RBP13.92□□□□□ -0.18
USP6NL-202ENST00000379237 SLC4A1APQ9BWU0 796 aaKnown RBP13.92□□□□□ -0.18
USP6NL-202ENST00000379237 CDCA7LQ96GN5 454 aa13.92□□□□□ -0.18
USP6NL-202ENST00000379237 GRPEL1Q9HAV7 217 aa13.92□□□□□ -0.18
USP6NL-202ENST00000379237 HSP90AB1P08238 724 aaKnown RBP13.91□□□□□ -0.18
USP6NL-202ENST00000379237 DDX11L8A8MPP1 907 aa13.91□□□□□ -0.18
USP6NL-202ENST00000379237 CALD1Q05682 793 aaKnown RBP13.9□□□□□ -0.18
USP6NL-202ENST00000379237 AAMPQ13685 434 aa13.9□□□□□ -0.18
USP6NL-202ENST00000379237 GBP4Q96PP9 640 aa13.9□□□□□ -0.18
USP6NL-202ENST00000379237 ARID3CA6NKF2 412 aa13.89□□□□□ -0.19
USP6NL-202ENST00000379237 CC2D1BQ5T0F9 858 aaKnown RBP13.89□□□□□ -0.19
USP6NL-202ENST00000379237 FGD1P98174 961 aa13.89□□□□□ -0.19
USP6NL-202ENST00000379237 PNISRQ8TF01 805 aaKnown RBP13.88□□□□□ -0.19
USP6NL-202ENST00000379237 CARD11Q9BXL7 1154 aa13.88□□□□□ -0.19
USP6NL-202ENST00000379237 BAZ1AQ9NRL2 1556 aaPredicted RBP13.88□□□□□ -0.19
USP6NL-202ENST00000379237 MCM4P33991 863 aa13.87□□□□□ -0.19
USP6NL-202ENST00000379237 PHLDB1Q86UU1 1377 aa13.87□□□□□ -0.19
USP6NL-202ENST00000379237 CHMP5Q9NZZ3 219 aa13.87□□□□□ -0.19
USP6NL-202ENST00000379237 ARHGAP35Q9NRY4 1499 aa13.86□□□□□ -0.19
USP6NL-202ENST00000379237 MFAP1P55081 439 aaKnown RBP13.86□□□□□ -0.19
USP6NL-202ENST00000379237 RALBP1Q15311 655 aa13.85□□□□□ -0.19
USP6NL-202ENST00000379237 CCDC18Q5T9S5 1454 aa13.85□□□□□ -0.19
USP6NL-202ENST00000379237 ARAP1Q96P48 1450 aa13.85□□□□□ -0.19
USP6NL-202ENST00000379237 MTERF4Q7Z6M4 381 aaKnown RBP13.85□□□□□ -0.19
USP6NL-202ENST00000379237 CUX2O14529 1486 aa13.84□□□□□ -0.19
USP6NL-202ENST00000379237 MYBBP1AQ9BQG0 1328 aaKnown RBP13.84□□□□□ -0.19
USP6NL-202ENST00000379237 MPHOSPH9Q99550 1183 aa13.83□□□□□ -0.19
USP6NL-202ENST00000379237 FOXD4L1Q9NU39 408 aa13.83□□□□□ -0.19
USP6NL-202ENST00000379237 NLRP13Q86W25 1043 aa13.83□□□□□ -0.2
USP6NL-202ENST00000379237 UQCRHLA0A096LP55 91 aa13.83□□□□□ -0.2
USP6NL-202ENST00000379237 UQCRHP07919 91 aa13.83□□□□□ -0.2
USP6NL-202ENST00000379237 BCL11BQ9C0K0 894 aaPredicted RBP13.83□□□□□ -0.2
USP6NL-202ENST00000379237 PDIA4P13667 645 aaKnown RBP13.82□□□□□ -0.2
USP6NL-202ENST00000379237 NASPP49321 788 aaPredicted RBP13.82□□□□□ -0.2
USP6NL-202ENST00000379237 FMN1Q68DA7 1419 aa13.82□□□□□ -0.2
USP6NL-202ENST00000379237 RNF123Q5XPI4 1314 aa13.82□□□□□ -0.2
USP6NL-202ENST00000379237 TOP2AP11388 1531 aaKnown RBP13.8□□□□□ -0.2
USP6NL-202ENST00000379237 C20orf194Q5TEA3 1177 aa13.8□□□□□ -0.2
USP6NL-202ENST00000379237 DDX49Q9Y6V7 483 aaKnown RBP13.8□□□□□ -0.2
USP6NL-202ENST00000379237 MAPK8IP3Q9UPT6 1336 aa13.8□□□□□ -0.2
USP6NL-202ENST00000379237 ZSCAN30Q86W11 494 aa13.79□□□□□ -0.2
USP6NL-202ENST00000379237 SMARCA2P51531 1590 aa13.79□□□□□ -0.2
USP6NL-202ENST00000379237 KIF27Q86VH2 1401 aa13.79□□□□□ -0.2
USP6NL-202ENST00000379237 UACAQ9BZF9 1416 aa13.79□□□□□ -0.2
USP6NL-202ENST00000379237 MAPK8IP2Q13387 824 aaPredicted RBP13.79□□□□□ -0.2
USP6NL-202ENST00000379237 C8orf34Q49A92 452 aa13.79□□□□□ -0.2
USP6NL-202ENST00000379237 KIF15Q9NS87 1388 aa13.78□□□□□ -0.2
USP6NL-202ENST00000379237 ZNF771Q7L3S4 317 aaPredicted RBP13.78□□□□□ -0.2
USP6NL-202ENST00000379237 CCDC173Q0VFZ6 552 aa13.78□□□□□ -0.2
USP6NL-202ENST00000379237 SKOR2Q2VWA4 1001 aaPredicted RBP13.78□□□□□ -0.2
USP6NL-202ENST00000379237 PTMSP20962 102 aa13.77□□□□□ -0.2
USP6NL-202ENST00000379237 ISY1Q9ULR0 285 aaKnown RBP13.76□□□□□ -0.21
USP6NL-202ENST00000379237 PLCB2Q00722 1185 aa13.76□□□□□ -0.21
USP6NL-202ENST00000379237 CSPP1Q1MSJ5 1256 aa13.76□□□□□ -0.21
USP6NL-202ENST00000379237 GOLGA2Q08379 1002 aa13.76□□□□□ -0.21
USP6NL-202ENST00000379237 TPRNQ4KMQ1 711 aa13.75□□□□□ -0.21
USP6NL-202ENST00000379237 KIAA2012Q0VF49 1180 aa13.74□□□□□ -0.21
USP6NL-202ENST00000379237 CHMP4BQ9H444 224 aaKnown RBP13.74□□□□□ -0.21
USP6NL-202ENST00000379237 CHAF1AQ13111 956 aaPredicted RBP13.74□□□□□ -0.21
USP6NL-202ENST00000379237 NBPF8Q3BBV2 869 aa13.73□□□□□ -0.21
USP6NL-202ENST00000379237 CBX1P83916 185 aa13.73□□□□□ -0.21
USP6NL-202ENST00000379237 XPCQ01831 940 aaPredicted RBP13.73□□□□□ -0.21
USP6NL-202ENST00000379237 NEUROD2Q15784 382 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms