RNA–Protein interactions for RNA: ENST00000377902.5

GNE-201, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GNE, Length 2,565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-201ENST00000377902 LAMC3Q9Y6N6 1575 aa24.75■■□□□ 1.55
GNE-201ENST00000377902 DNAJC5BQ9UF47 199 aa24.73■■□□□ 1.55
GNE-201ENST00000377902 EPRSP07814 1512 aaKnown RBP24.72■■□□□ 1.55
GNE-201ENST00000377902 SENP3-EIF4A1A0A087X0R7 540 aa24.71■■□□□ 1.55
GNE-201ENST00000377902 KIF7Q2M1P5 1343 aa24.71■■□□□ 1.55
GNE-201ENST00000377902 ZNF644Q9H582 1327 aaPredicted RBP24.7■■□□□ 1.55
GNE-201ENST00000377902 ERICH6Q7L0X2 663 aa24.7■■□□□ 1.55
GNE-201ENST00000377902 ZBED9Q6R2W3 1325 aa24.69■■□□□ 1.54
GNE-201ENST00000377902 ANKRD30BQ9BXX2 1392 aa24.68■■□□□ 1.54
GNE-201ENST00000377902 ERICH6BQ5W0A0 696 aa24.67■■□□□ 1.54
GNE-201ENST00000377902 AKNAQ7Z591 1439 aa24.67■■□□□ 1.54
GNE-201ENST00000377902 SLC4A1APQ9BWU0 796 aaKnown RBP24.65■■□□□ 1.54
GNE-201ENST00000377902 POLR3GLQ9BT43 218 aa24.64■■□□□ 1.53
GNE-201ENST00000377902 MIA2Q96PC5 1412 aa24.63■■□□□ 1.53
GNE-201ENST00000377902 RPRD2Q5VT52 1461 aaKnown RBP24.63■■□□□ 1.53
GNE-201ENST00000377902 TEX14Q8IWB6 1497 aa24.62■■□□□ 1.53
GNE-201ENST00000377902 SPATA31E1Q6ZUB1 1445 aa24.61■■□□□ 1.53
GNE-201ENST00000377902 KIF21AQ7Z4S6 1674 aa24.6■■□□□ 1.53
GNE-201ENST00000377902 DAPK1P53355 1430 aa24.6■■□□□ 1.53
GNE-201ENST00000377902 ZNF326Q5BKZ1 582 aaKnown RBP24.58■■□□□ 1.53
GNE-201ENST00000377902 ABCC5O15440 1437 aa24.57■■□□□ 1.52
GNE-201ENST00000377902 IQGAP2Q13576 1575 aa24.56■■□□□ 1.52
GNE-201ENST00000377902 WDR62O43379 1518 aa24.55■■□□□ 1.52
GNE-201ENST00000377902 TARBP1Q13395 1621 aaKnown RBP24.55■■□□□ 1.52
GNE-201ENST00000377902 PDS5BQ9NTI5 1447 aa24.54■■□□□ 1.52
GNE-201ENST00000377902 ROCK1Q13464 1354 aa24.5■■□□□ 1.51
GNE-201ENST00000377902 DHX29Q7Z478 1369 aaKnown RBP24.49■■□□□ 1.51
GNE-201ENST00000377902 PBRM1Q86U86 1689 aa24.47■■□□□ 1.51
GNE-201ENST00000377902 DNMT1P26358 1616 aaKnown RBP24.46■■□□□ 1.51
GNE-201ENST00000377902 PAK3O75914 559 aaPredicted RBP24.45■■□□□ 1.5
GNE-201ENST00000377902 PZPP20742 1482 aa24.44■■□□□ 1.5
GNE-201ENST00000377902 BCORL1Q5H9F3 1711 aa24.44■■□□□ 1.5
GNE-201ENST00000377902 ZNF777Q9ULD5 760 aaPredicted RBP24.44■■□□□ 1.5
GNE-201ENST00000377902 USP47Q96K76 1375 aa24.44■■□□□ 1.5
GNE-201ENST00000377902 SMG6Q86US8 1419 aaKnown RBP24.43■■□□□ 1.5
GNE-201ENST00000377902 NUDCQ9Y266 331 aa24.43■■□□□ 1.5
GNE-201ENST00000377902 POLR1AO95602 1720 aaPredicted RBP24.43■■□□□ 1.5
GNE-201ENST00000377902 ADAMTS12P58397 1594 aa24.41■■□□□ 1.5
GNE-201ENST00000377902 CCDC136Q96JN2 1154 aa24.4■■□□□ 1.5
GNE-201ENST00000377902 NUP153P49790 1475 aaKnown RBP24.4■■□□□ 1.5
GNE-201ENST00000377902 NBR1Q14596 966 aa24.4■■□□□ 1.5
GNE-201ENST00000377902 PKD2Q13563 968 aa24.39■■□□□ 1.5
GNE-201ENST00000377902 NOP58Q9Y2X3 529 aaKnown RBP24.38■■□□□ 1.49
GNE-201ENST00000377902 CFDP1Q9UEE9 299 aaPredicted RBP24.37■■□□□ 1.49
GNE-201ENST00000377902 PRG4Q92954 1404 aaPredicted RBP24.37■■□□□ 1.49
GNE-201ENST00000377902 DEKP35659 375 aaKnown RBP24.35■■□□□ 1.49
GNE-201ENST00000377902 PNISRQ8TF01 805 aaKnown RBP24.35■■□□□ 1.49
GNE-201ENST00000377902 DISP1Q96F81 1524 aa24.35■■□□□ 1.49
GNE-201ENST00000377902 MBD5Q9P267 1494 aa24.35■■□□□ 1.49
GNE-201ENST00000377902 RNF123Q5XPI4 1314 aa24.34■■□□□ 1.49
GNE-201ENST00000377902 TMC1Q8TDI8 760 aa24.33■■□□□ 1.49
GNE-201ENST00000377902 CAMSAP2Q08AD1 1489 aa24.32■■□□□ 1.48
GNE-201ENST00000377902 KIAA1107Q9UPP5 1409 aa24.31■■□□□ 1.48
GNE-201ENST00000377902 ZNF608Q9ULD9 1512 aaPredicted RBP24.31■■□□□ 1.48
GNE-201ENST00000377902 KDM2AQ9Y2K7 1162 aa24.3■■□□□ 1.48
GNE-201ENST00000377902 KIAA0556O60303 1618 aa24.3■■□□□ 1.48
GNE-201ENST00000377902 CARD11Q9BXL7 1154 aa24.28■■□□□ 1.48
GNE-201ENST00000377902 SALL2Q9Y467 1007 aaPredicted RBP24.27■■□□□ 1.48
GNE-201ENST00000377902 KDM5CP41229 1560 aa24.27■■□□□ 1.48
GNE-201ENST00000377902 RAPGEF6Q8TEU7 1601 aa24.27■■□□□ 1.48
GNE-201ENST00000377902 ST20-MTHFSA0A0A6YYL1 179 aa24.25■■□□□ 1.47
GNE-201ENST00000377902 GPATCH8Q9UKJ3 1502 aaKnown RBP24.24■■□□□ 1.47
GNE-201ENST00000377902 KIAA0586Q9BVV6 1533 aa24.23■■□□□ 1.47
GNE-201ENST00000377902 TROQ12816 1431 aaPredicted RBP24.22■■□□□ 1.47
GNE-201ENST00000377902 KIF14Q15058 1648 aa24.22■■□□□ 1.47
GNE-201ENST00000377902 PLB1Q6P1J6 1458 aa24.22■■□□□ 1.47
GNE-201ENST00000377902 IPO9Q96P70 1041 aaKnown RBP24.2■■□□□ 1.47
GNE-201ENST00000377902 ANP32AP39687 249 aaKnown RBP24.19■■□□□ 1.46
GNE-201ENST00000377902 NUP155O75694 1391 aa24.19■■□□□ 1.46
GNE-201ENST00000377902 ANKRD50Q9ULJ7 1429 aa24.19■■□□□ 1.46
GNE-201ENST00000377902 ANKRD30AQ9BXX3 1397 aa24.18■■□□□ 1.46
GNE-201ENST00000377902 ARID4BQ4LE39 1312 aaPredicted RBP24.18■■□□□ 1.46
GNE-201ENST00000377902 EXOC6Q8TAG9 804 aa24.17■■□□□ 1.46
GNE-201ENST00000377902 DCAF11Q8TEB1 546 aa24.17■■□□□ 1.46
GNE-201ENST00000377902 MYT1LQ9UL68 1186 aa24.17■■□□□ 1.46
GNE-201ENST00000377902 KIF15Q9NS87 1388 aa24.16■■□□□ 1.46
GNE-201ENST00000377902 ADGBQ8N7X0 1667 aa24.16■■□□□ 1.46
GNE-201ENST00000377902 LRPPRCP42704 1394 aaKnown RBP24.14■■□□□ 1.46
GNE-201ENST00000377902 ADGRL2O95490 1459 aa24.14■■□□□ 1.45
GNE-201ENST00000377902 RALGAPBQ86X10 1494 aa24.14■■□□□ 1.45
GNE-201ENST00000377902 MRC2Q9UBG0 1479 aa24.14■■□□□ 1.45
GNE-201ENST00000377902 ZBTB47Q9UFB7 747 aaPredicted RBP24.13■■□□□ 1.45
GNE-201ENST00000377902 NPM2Q86SE8 214 aaKnown RBP24.13■■□□□ 1.45
GNE-201ENST00000377902 MYBBP1AQ9BQG0 1328 aaKnown RBP24.13■■□□□ 1.45
GNE-201ENST00000377902 ROCK2O75116 1388 aaKnown RBP24.13■■□□□ 1.45
GNE-201ENST00000377902 UHRF1BP1Q6BDS2 1440 aa24.13■■□□□ 1.45
GNE-201ENST00000377902 RRP1P56182 461 aaKnown RBP24.12■■□□□ 1.45
GNE-201ENST00000377902 GRIN2AQ12879 1464 aa24.11■■□□□ 1.45
GNE-201ENST00000377902 FBLN2P98095 1184 aa24.1■■□□□ 1.45
GNE-201ENST00000377902 CROCC2H7BZ55 1655 aa24.1■■□□□ 1.45
GNE-201ENST00000377902 ITSN2Q9NZM3 1697 aa24.1■■□□□ 1.45
GNE-201ENST00000377902 RCAN3Q9UKA8 241 aa24.08■■□□□ 1.45
GNE-201ENST00000377902 BRD4O60885 1362 aaPredicted RBP24.08■■□□□ 1.45
GNE-201ENST00000377902 CDCA7LQ96GN5 454 aa24.07■■□□□ 1.44
GNE-201ENST00000377902 RALBP1Q15311 655 aa24.06■■□□□ 1.44
GNE-201ENST00000377902 HNRNPMP52272 730 aaKnown RBP eCLIP24.05■■□□□ 1.44
GNE-201ENST00000377902 IFT140Q96RY7 1462 aa24.05■■□□□ 1.44
GNE-201ENST00000377902 C9orf84Q5VXU9 1444 aa24.04■■□□□ 1.44
GNE-201ENST00000377902 CHMP7Q8WUX9 453 aaPredicted RBP24.04■■□□□ 1.44
GNE-201ENST00000377902 SKAP1Q86WV1 359 aa24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms