RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 TSHZ2Q9NRE2 1034 aa35.46■■■■□ 3.27
C9orf40-201ENST00000376854 BCANQ96GW7 911 aa35.44■■■■□ 3.26
C9orf40-201ENST00000376854 ZNF644Q9H582 1327 aaPredicted RBP35.42■■■■□ 3.26
C9orf40-201ENST00000376854 HSPA5P11021 654 aaKnown RBP35.41■■■■□ 3.26
C9orf40-201ENST00000376854 PLB1Q6P1J6 1458 aa35.38■■■■□ 3.25
C9orf40-201ENST00000376854 DAPK1P53355 1430 aa35.37■■■■□ 3.25
C9orf40-201ENST00000376854 NEFLP07196 543 aa35.37■■■■□ 3.25
C9orf40-201ENST00000376854 PRG4Q92954 1404 aaPredicted RBP35.36■■■■□ 3.25
C9orf40-201ENST00000376854 ROCK1Q13464 1354 aa35.36■■■■□ 3.25
C9orf40-201ENST00000376854 WASHC2AQ641Q2 1341 aa35.36■■■■□ 3.25
C9orf40-201ENST00000376854 EIF4G2P78344 907 aaKnown RBP eCLIP35.34■■■■□ 3.25
C9orf40-201ENST00000376854 ABCC5O15440 1437 aa35.33■■■■□ 3.25
C9orf40-201ENST00000376854 CDK11AQ9UQ88 783 aaPredicted RBP35.33■■■■□ 3.25
C9orf40-201ENST00000376854 FOXD1Q16676 465 aa35.33■■■■□ 3.25
C9orf40-201ENST00000376854 L3MBTL2Q969R5 705 aa35.32■■■■□ 3.24
C9orf40-201ENST00000376854 NUP160Q12769 1436 aa35.31■■■■□ 3.24
C9orf40-201ENST00000376854 DNMT1P26358 1616 aaKnown RBP35.3■■■■□ 3.24
C9orf40-201ENST00000376854 JPH4Q96JJ6 628 aa35.29■■■■□ 3.24
C9orf40-201ENST00000376854 TROQ12816 1431 aaPredicted RBP35.28■■■■□ 3.24
C9orf40-201ENST00000376854 ANKRD30BQ9BXX2 1392 aa35.24■■■■□ 3.23
C9orf40-201ENST00000376854 CARMIL2Q6F5E8 1435 aa35.22■■■■□ 3.23
C9orf40-201ENST00000376854 KIF14Q15058 1648 aa35.2■■■■□ 3.23
C9orf40-201ENST00000376854 RPRD2Q5VT52 1461 aaKnown RBP35.2■■■■□ 3.23
C9orf40-201ENST00000376854 CAMSAP2Q08AD1 1489 aa35.16■■■■□ 3.22
C9orf40-201ENST00000376854 CFDP1Q9UEE9 299 aaPredicted RBP35.16■■■■□ 3.22
C9orf40-201ENST00000376854 CNTLNQ9NXG0 1405 aa35.16■■■■□ 3.22
C9orf40-201ENST00000376854 HNRNPUQ00839 825 aaKnown RBP eCLIP35.16■■■■□ 3.22
C9orf40-201ENST00000376854 GPATCH8Q9UKJ3 1502 aaKnown RBP35.15■■■■□ 3.22
C9orf40-201ENST00000376854 SLC4A1APQ9BWU0 796 aaKnown RBP35.15■■■■□ 3.22
C9orf40-201ENST00000376854 TEX14Q8IWB6 1497 aa35.13■■■■□ 3.21
C9orf40-201ENST00000376854 NCOA1Q15788 1441 aa35.12■■■■□ 3.21
C9orf40-201ENST00000376854 NBPF8Q3BBV2 869 aa35.11■■■■□ 3.21
C9orf40-201ENST00000376854 ZNF777Q9ULD5 760 aaPredicted RBP35.11■■■■□ 3.21
C9orf40-201ENST00000376854 ADCY10Q96PN6 1610 aa35.1■■■■□ 3.21
C9orf40-201ENST00000376854 CCDC7Q96M83 1385 aa35.1■■■■□ 3.21
C9orf40-201ENST00000376854 C11orf95C9JLR9 678 aaPredicted RBP35.09■■■■□ 3.21
C9orf40-201ENST00000376854 ITSN2Q9NZM3 1697 aa35.08■■■■□ 3.21
C9orf40-201ENST00000376854 ABCA8O94911 1581 aa35.06■■■■□ 3.2
C9orf40-201ENST00000376854 ATP10BO94823 1461 aa35■■■■□ 3.19
C9orf40-201ENST00000376854 PZPP20742 1482 aa35■■■■□ 3.19
C9orf40-201ENST00000376854 PRKRIP1Q9H875 184 aaPredicted RBP34.98■■■■□ 3.19
C9orf40-201ENST00000376854 PLEKHD1A6NEE1 506 aa34.97■■■■□ 3.19
C9orf40-201ENST00000376854 SPATA31E1Q6ZUB1 1445 aa34.97■■■■□ 3.19
C9orf40-201ENST00000376854 CCDC184Q52MB2 194 aa34.96■■■■□ 3.19
C9orf40-201ENST00000376854 ADGBQ8N7X0 1667 aa34.95■■■■□ 3.19
C9orf40-201ENST00000376854 CROCC2H7BZ55 1655 aa34.93■■■■□ 3.18
C9orf40-201ENST00000376854 KIF7Q2M1P5 1343 aa34.92■■■■□ 3.18
C9orf40-201ENST00000376854 ADGRL2O95490 1459 aa34.92■■■■□ 3.18
C9orf40-201ENST00000376854 ABCC10Q5T3U5 1492 aa34.92■■■■□ 3.18
C9orf40-201ENST00000376854 CDC42BPAQ5VT25 1732 aa34.91■■■■□ 3.18
C9orf40-201ENST00000376854 KIAA1107Q9UPP5 1409 aa34.88■■■■□ 3.17
C9orf40-201ENST00000376854 ANKRD30AQ9BXX3 1397 aa34.86■■■■□ 3.17
C9orf40-201ENST00000376854 MRS2Q9HD23 443 aa34.84■■■■□ 3.17
C9orf40-201ENST00000376854 PTPRGP23470 1445 aa34.84■■■■□ 3.17
C9orf40-201ENST00000376854 MBD5Q9P267 1494 aa34.82■■■■□ 3.17
C9orf40-201ENST00000376854 FAM9BQ8IZU0 186 aa34.82■■■■□ 3.16
C9orf40-201ENST00000376854 POLR1AO95602 1720 aaPredicted RBP34.81■■■■□ 3.16
C9orf40-201ENST00000376854 PKD2Q13563 968 aa34.81■■■■□ 3.16
C9orf40-201ENST00000376854 RBM19Q9Y4C8 960 aaKnown RBP34.8■■■■□ 3.16
C9orf40-201ENST00000376854 IRX6P78412 446 aaPredicted RBP34.78■■■■□ 3.16
C9orf40-201ENST00000376854 ANKRD50Q9ULJ7 1429 aa34.78■■■■□ 3.16
C9orf40-201ENST00000376854 CHD1O14646 1710 aa34.77■■■■□ 3.16
C9orf40-201ENST00000376854 C9orf84Q5VXU9 1444 aa34.75■■■■□ 3.15
C9orf40-201ENST00000376854 ANP32EQ9BTT0 268 aa34.73■■■■□ 3.15
C9orf40-201ENST00000376854 ZNF326Q5BKZ1 582 aaKnown RBP34.72■■■■□ 3.15
C9orf40-201ENST00000376854 USP47Q96K76 1375 aa34.72■■■■□ 3.15
C9orf40-201ENST00000376854 HNRNPMP52272 730 aaKnown RBP eCLIP34.71■■■■□ 3.15
C9orf40-201ENST00000376854 ZBED9Q6R2W3 1325 aa34.71■■■■□ 3.15
C9orf40-201ENST00000376854 SHANK2Q9UPX8 1470 aa34.71■■■■□ 3.15
C9orf40-201ENST00000376854 ERICH6BQ5W0A0 696 aa34.68■■■■□ 3.14
C9orf40-201ENST00000376854 NUP155O75694 1391 aa34.65■■■■□ 3.14
C9orf40-201ENST00000376854 TSPY4P0CV99 314 aa34.65■■■■□ 3.14
C9orf40-201ENST00000376854 TSPY10P0CW01 314 aa34.65■■■■□ 3.14
C9orf40-201ENST00000376854 DHX29Q7Z478 1369 aaKnown RBP34.63■■■■□ 3.13
C9orf40-201ENST00000376854 BCORL1Q5H9F3 1711 aa34.61■■■■□ 3.13
C9orf40-201ENST00000376854 POLR3GLQ9BT43 218 aa34.59■■■■□ 3.13
C9orf40-201ENST00000376854 UHRF1BP1Q6BDS2 1440 aa34.59■■■■□ 3.13
C9orf40-201ENST00000376854 KDM5CP41229 1560 aa34.59■■■■□ 3.13
C9orf40-201ENST00000376854 SAMD9LQ8IVG5 1584 aa34.59■■■■□ 3.13
C9orf40-201ENST00000376854 KIF15Q9NS87 1388 aa34.59■■■■□ 3.13
C9orf40-201ENST00000376854 ERCC6L2Q5T890 1561 aa34.59■■■■□ 3.13
C9orf40-201ENST00000376854 CDC42BPBQ9Y5S2 1711 aa34.58■■■■□ 3.13
C9orf40-201ENST00000376854 ARID4BQ4LE39 1312 aaPredicted RBP34.58■■■■□ 3.13
C9orf40-201ENST00000376854 ARHGEF5Q12774 1597 aa34.58■■■■□ 3.13
C9orf40-201ENST00000376854 SHROOM2Q13796 1616 aa34.58■■■■□ 3.13
C9orf40-201ENST00000376854 PPP4R2Q9NY27 417 aa34.56■■■■□ 3.12
C9orf40-201ENST00000376854 PREX2Q70Z35 1606 aa34.56■■■■□ 3.12
C9orf40-201ENST00000376854 RALGAPBQ86X10 1494 aa34.54■■■■□ 3.12
C9orf40-201ENST00000376854 KDM5DQ9BY66 1539 aa34.54■■■■□ 3.12
C9orf40-201ENST00000376854 ARHGEF12Q9NZN5 1544 aa34.51■■■■□ 3.12
C9orf40-201ENST00000376854 CCDC141Q6ZP82 1450 aa34.51■■■■□ 3.11
C9orf40-201ENST00000376854 CNGB1Q14028 1251 aaPredicted RBP34.5■■■■□ 3.11
C9orf40-201ENST00000376854 TTC37Q6PGP7 1564 aa34.49■■■■□ 3.11
C9orf40-201ENST00000376854 CARD11Q9BXL7 1154 aa34.49■■■■□ 3.11
C9orf40-201ENST00000376854 ROCK2O75116 1388 aaKnown RBP34.46■■■■□ 3.11
C9orf40-201ENST00000376854 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.44■■■■□ 3.12e-6■■■■■ 28.3
C9orf40-201ENST00000376854 SYCP2Q9BX26 1530 aa34.44■■■■□ 3.1
C9orf40-201ENST00000376854 KDM2AQ9Y2K7 1162 aa34.42■■■■□ 3.1
C9orf40-201ENST00000376854 ARHGAP5Q13017 1502 aa34.42■■■■□ 3.1
C9orf40-201ENST00000376854 ABCC2Q92887 1545 aa34.42■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms