RNA–Protein interactions for RNA: ENST00000375315.6

C9orf3-203, Transcript of chromosome 9 open reading frame 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf3, Length 3,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-203ENST00000375315 DHX57Q6P158 1386 aaKnown RBP16.92■□□□□ 0.3
C9orf3-203ENST00000375315 SIN3AQ96ST3 1273 aa16.89■□□□□ 0.29
C9orf3-203ENST00000375315 PTPRKQ15262 1439 aa16.88■□□□□ 0.29
C9orf3-203ENST00000375315 ATP10BO94823 1461 aa16.88■□□□□ 0.29
C9orf3-203ENST00000375315 EHBP1L1Q8N3D4 1523 aa16.88■□□□□ 0.29
C9orf3-203ENST00000375315 HNRNPMP52272 730 aaKnown RBP eCLIP16.86■□□□□ 0.296e-7■■■□□ 18.3
C9orf3-203ENST00000375315 SETD5Q9C0A6 1442 aa16.86■□□□□ 0.29
C9orf3-203ENST00000375315 SUPT6HQ7KZ85 1726 aaKnown RBP16.86■□□□□ 0.29
C9orf3-203ENST00000375315 UACAQ9BZF9 1416 aa16.84■□□□□ 0.29
C9orf3-203ENST00000375315 FOXD1Q16676 465 aa16.83■□□□□ 0.28
C9orf3-203ENST00000375315 CYB5RLQ6IPT4 315 aa16.83■□□□□ 0.28
C9orf3-203ENST00000375315 TROQ12816 1431 aaPredicted RBP16.83■□□□□ 0.28
C9orf3-203ENST00000375315 SALL2Q9Y467 1007 aaPredicted RBP16.81■□□□□ 0.28
C9orf3-203ENST00000375315 ARHGEF11O15085 1522 aa16.81■□□□□ 0.28
C9orf3-203ENST00000375315 KIF14Q15058 1648 aa16.78■□□□□ 0.28
C9orf3-203ENST00000375315 NPM1P06748 294 aaKnown RBP eCLIP16.77■□□□□ 0.28
C9orf3-203ENST00000375315 PTPN23Q9H3S7 1636 aa16.77■□□□□ 0.28
C9orf3-203ENST00000375315 ABCA8O94911 1581 aa16.76■□□□□ 0.27
C9orf3-203ENST00000375315 CCER2I3L3R5 266 aa16.75■□□□□ 0.27
C9orf3-203ENST00000375315 UBE2Q2Q8WVN8 375 aa16.74■□□□□ 0.27
C9orf3-203ENST00000375315 TSPY4P0CV99 314 aa16.73■□□□□ 0.27
C9orf3-203ENST00000375315 TSPY10P0CW01 314 aa16.73■□□□□ 0.27
C9orf3-203ENST00000375315 DDX10Q13206 875 aaKnown RBP16.73■□□□□ 0.27
C9orf3-203ENST00000375315 GPATCH8Q9UKJ3 1502 aaKnown RBP16.72■□□□□ 0.27
C9orf3-203ENST00000375315 NOP58Q9Y2X3 529 aaKnown RBP16.72■□□□□ 0.27
C9orf3-203ENST00000375315 CLASP1Q7Z460 1538 aa16.71■□□□□ 0.27
C9orf3-203ENST00000375315 NBR1Q14596 966 aa16.71■□□□□ 0.27
C9orf3-203ENST00000375315 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.7■□□□□ 0.261e-6■■□□□ 11.7
C9orf3-203ENST00000375315 HIRIP3Q9BW71 556 aaPredicted RBP16.7■□□□□ 0.26
C9orf3-203ENST00000375315 NAIPQ13075 1403 aa16.69■□□□□ 0.26
C9orf3-203ENST00000375315 RTL5Q5HYW3 569 aaPredicted RBP16.68■□□□□ 0.26
C9orf3-203ENST00000375315 CCDC136Q96JN2 1154 aa16.68■□□□□ 0.26
C9orf3-203ENST00000375315 ABCC5O15440 1437 aa16.68■□□□□ 0.26
C9orf3-203ENST00000375315 ANP32CO43423 234 aa16.68■□□□□ 0.26
C9orf3-203ENST00000375315 MIA2Q96PC5 1412 aa16.67■□□□□ 0.26
C9orf3-203ENST00000375315 SHROOM2Q13796 1616 aa16.67■□□□□ 0.26
C9orf3-203ENST00000375315 DAPK1P53355 1430 aa16.66■□□□□ 0.26
C9orf3-203ENST00000375315 CAMSAP2Q08AD1 1489 aa16.66■□□□□ 0.26
C9orf3-203ENST00000375315 SLC4A1APQ9BWU0 796 aaKnown RBP16.66■□□□□ 0.26
C9orf3-203ENST00000375315 ABCC2Q92887 1545 aa16.65■□□□□ 0.26
C9orf3-203ENST00000375315 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.65■□□□□ 0.262e-9■■■■■ 67.4
C9orf3-203ENST00000375315 AFAP1Q8N556 730 aa16.63■□□□□ 0.25
C9orf3-203ENST00000375315 HFM1A2PYH4 1435 aa16.63■□□□□ 0.25
C9orf3-203ENST00000375315 PPP1R15AO75807 674 aaPredicted RBP16.62■□□□□ 0.25
C9orf3-203ENST00000375315 MPHOSPH9Q99550 1183 aa16.62■□□□□ 0.25
C9orf3-203ENST00000375315 PPP4R2Q9NY27 417 aa16.62■□□□□ 0.25
C9orf3-203ENST00000375315 ARHGAP5Q13017 1502 aa16.61■□□□□ 0.25
C9orf3-203ENST00000375315 EFCAB2Q5VUJ9 269 aa16.6■□□□□ 0.25
C9orf3-203ENST00000375315 IRX6P78412 446 aaPredicted RBP16.6■□□□□ 0.25
C9orf3-203ENST00000375315 TCOF1Q13428 1488 aaKnown RBP16.59■□□□□ 0.25
C9orf3-203ENST00000375315 KDM6BO15054 1643 aa16.59■□□□□ 0.25
C9orf3-203ENST00000375315 ABCC10Q5T3U5 1492 aa16.58■□□□□ 0.25
C9orf3-203ENST00000375315 IL27Q8NEV9 243 aa16.58■□□□□ 0.24
C9orf3-203ENST00000375315 ZNF326Q5BKZ1 582 aaKnown RBP16.58■□□□□ 0.24
C9orf3-203ENST00000375315 MAPKBP1O60336 1514 aa16.57■□□□□ 0.24
C9orf3-203ENST00000375315 PAK3O75914 559 aaPredicted RBP16.56■□□□□ 0.24
C9orf3-203ENST00000375315 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.55■□□□□ 0.24
C9orf3-203ENST00000375315 TONSLQ96HA7 1378 aa16.55■□□□□ 0.24
C9orf3-203ENST00000375315 ANKRD30AQ9BXX3 1397 aa16.55■□□□□ 0.24
C9orf3-203ENST00000375315 TTC37Q6PGP7 1564 aa16.55■□□□□ 0.24
C9orf3-203ENST00000375315 ZCCHC11Q5TAX3 1644 aaKnown RBP16.55■□□□□ 0.24
C9orf3-203ENST00000375315 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.54■□□□□ 0.24
C9orf3-203ENST00000375315 ASXL2Q76L83 1435 aa16.54■□□□□ 0.24
C9orf3-203ENST00000375315 RTN4Q9NQC3 1192 aaKnown RBP16.54■□□□□ 0.24
C9orf3-203ENST00000375315 PKD2Q13563 968 aa16.54■□□□□ 0.24
C9orf3-203ENST00000375315 C9orf84Q5VXU9 1444 aa16.53■□□□□ 0.24
C9orf3-203ENST00000375315 ADCY10Q96PN6 1610 aa16.53■□□□□ 0.24
C9orf3-203ENST00000375315 NCOA1Q15788 1441 aa16.53■□□□□ 0.24
C9orf3-203ENST00000375315 CDC42BPAQ5VT25 1732 aa16.52■□□□□ 0.24
C9orf3-203ENST00000375315 NUP155O75694 1391 aa16.52■□□□□ 0.23
C9orf3-203ENST00000375315 HNRNPUQ00839 825 aaKnown RBP eCLIP16.52■□□□□ 0.23
C9orf3-203ENST00000375315 KIF15Q9NS87 1388 aa16.51■□□□□ 0.23
C9orf3-203ENST00000375315 KDM5BQ9UGL1 1544 aa16.51■□□□□ 0.23
C9orf3-203ENST00000375315 AKNAQ7Z591 1439 aa16.51■□□□□ 0.23
C9orf3-203ENST00000375315 ANP32AP39687 249 aaKnown RBP16.51■□□□□ 0.23
C9orf3-203ENST00000375315 SYCP2Q9BX26 1530 aa16.5■□□□□ 0.23
C9orf3-203ENST00000375315 ANKRD50Q9ULJ7 1429 aa16.49■□□□□ 0.23
C9orf3-203ENST00000375315 ITSN2Q9NZM3 1697 aa16.48■□□□□ 0.23
C9orf3-203ENST00000375315 SPAG9O60271 1321 aaKnown RBP16.48■□□□□ 0.23
C9orf3-203ENST00000375315 DNMT1P26358 1616 aaKnown RBP16.48■□□□□ 0.23
C9orf3-203ENST00000375315 IPO9Q96P70 1041 aaKnown RBP16.48■□□□□ 0.23
C9orf3-203ENST00000375315 ZBTB47Q9UFB7 747 aaPredicted RBP16.48■□□□□ 0.23
C9orf3-203ENST00000375315 WDR7Q9Y4E6 1490 aa16.47■□□□□ 0.23
C9orf3-203ENST00000375315 KDM2AQ9Y2K7 1162 aa16.47■□□□□ 0.23
C9orf3-203ENST00000375315 RAPGEF3O95398 923 aa16.46■□□□□ 0.23
C9orf3-203ENST00000375315 FAM69CQ0P6D2 419 aa16.46■□□□□ 0.23
C9orf3-203ENST00000375315 TRAPPC8Q9Y2L5 1435 aa16.46■□□□□ 0.23
C9orf3-203ENST00000375315 UHRF1BP1LA0JNW5 1464 aa16.45■□□□□ 0.22
C9orf3-203ENST00000375315 PLCH2O75038 1416 aa16.45■□□□□ 0.22
C9orf3-203ENST00000375315 SAMD9LQ8IVG5 1584 aa16.45■□□□□ 0.22
C9orf3-203ENST00000375315 RGL3Q3MIN7 710 aa16.45■□□□□ 0.22
C9orf3-203ENST00000375315 L3MBTL2Q969R5 705 aa16.44■□□□□ 0.22
C9orf3-203ENST00000375315 ROCK1Q13464 1354 aa16.44■□□□□ 0.22
C9orf3-203ENST00000375315 B4GALNT3Q6L9W6 998 aa16.44■□□□□ 0.22
C9orf3-203ENST00000375315 MBD5Q9P267 1494 aa16.44■□□□□ 0.22
C9orf3-203ENST00000375315 CDC42BPBQ9Y5S2 1711 aa16.44■□□□□ 0.22
C9orf3-203ENST00000375315 TIMELESSQ9UNS1 1208 aa16.43■□□□□ 0.22
C9orf3-203ENST00000375315 ARHGEF12Q9NZN5 1544 aa16.43■□□□□ 0.22
C9orf3-203ENST00000375315 CCDC141Q6ZP82 1450 aa16.42■□□□□ 0.22
C9orf3-203ENST00000375315 SCAPERQ9BY12 1400 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms