RNA–Protein interactions for RNA: ENST00000374747.9

NPLOC4-202, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2 BASIC

Gene NPLOC4, Length 5,538 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-202ENST00000374747 MRC2Q9UBG0 1479 aa16■□□□□ 0.15
NPLOC4-202ENST00000374747 GRIN2BQ13224 1484 aa16■□□□□ 0.15
NPLOC4-202ENST00000374747 SUPT16HQ9Y5B9 1047 aaKnown RBP16■□□□□ 0.15
NPLOC4-202ENST00000374747 PTMAP06454 111 aaKnown RBP16■□□□□ 0.15
NPLOC4-202ENST00000374747 KNSTRNQ9Y448 316 aa16■□□□□ 0.15
NPLOC4-202ENST00000374747 NUP155O75694 1391 aa15.99■□□□□ 0.15
NPLOC4-202ENST00000374747 SENP3Q9H4L4 574 aaPredicted RBP15.98■□□□□ 0.15
NPLOC4-202ENST00000374747 TOPBP1Q92547 1522 aa15.97■□□□□ 0.15
NPLOC4-202ENST00000374747 HNRNPMP52272 730 aaKnown RBP eCLIP15.96■□□□□ 0.151e-6■■■■□ 20.4
NPLOC4-202ENST00000374747 NOP58Q9Y2X3 529 aaKnown RBP15.96■□□□□ 0.15
NPLOC4-202ENST00000374747 NAP1L5Q96NT1 182 aaPredicted RBP15.96■□□□□ 0.15
NPLOC4-202ENST00000374747 PPP4R2Q9NY27 417 aa15.96■□□□□ 0.15
NPLOC4-202ENST00000374747 DNTTIP2Q5QJE6 756 aaKnown RBP15.95■□□□□ 0.14
NPLOC4-202ENST00000374747 GGT6Q6P531 493 aa15.95■□□□□ 0.14
NPLOC4-202ENST00000374747 IFT140Q96RY7 1462 aa15.94■□□□□ 0.14
NPLOC4-202ENST00000374747 TRHP20396 242 aaPredicted RBP15.94■□□□□ 0.14
NPLOC4-202ENST00000374747 OSCARQ8IYS5 282 aa15.94■□□□□ 0.14
NPLOC4-202ENST00000374747 SPAG9O60271 1321 aaKnown RBP15.93■□□□□ 0.14
NPLOC4-202ENST00000374747 POGKQ9P215 609 aa15.93■□□□□ 0.14
NPLOC4-202ENST00000374747 LAS1LQ9Y4W2 734 aaKnown RBP15.93■□□□□ 0.14
NPLOC4-202ENST00000374747 CFAP53Q96M91 514 aa15.93■□□□□ 0.14
NPLOC4-202ENST00000374747 HDGFP51858 240 aaKnown RBP15.93■□□□□ 0.14
NPLOC4-202ENST00000374747 RTN4Q9NQC3 1192 aaKnown RBP15.92■□□□□ 0.14
NPLOC4-202ENST00000374747 FOXD1Q16676 465 aa15.92■□□□□ 0.14
NPLOC4-202ENST00000374747 TMF1P82094 1093 aa15.92■□□□□ 0.14
NPLOC4-202ENST00000374747 DNAJC5BQ9UF47 199 aa15.92■□□□□ 0.14
NPLOC4-202ENST00000374747 POLA1P09884 1462 aaPredicted RBP15.92■□□□□ 0.14
NPLOC4-202ENST00000374747 DNMBPQ6XZF7 1577 aa15.91■□□□□ 0.14
NPLOC4-202ENST00000374747 ZRSR1Q15695 479 aaKnown RBP15.9■□□□□ 0.14
NPLOC4-202ENST00000374747 C14orf37Q86TY3 774 aa15.9■□□□□ 0.14
NPLOC4-202ENST00000374747 CASC1Q6TDU7 716 aa15.9■□□□□ 0.14
NPLOC4-202ENST00000374747 MLECQ14165 292 aa15.89■□□□□ 0.13
NPLOC4-202ENST00000374747 MAPKBP1O60336 1514 aa15.89■□□□□ 0.13
NPLOC4-202ENST00000374747 LRRC9Q6ZRR7 1453 aa15.88■□□□□ 0.13
NPLOC4-202ENST00000374747 CASKIN1Q8WXD9 1431 aa15.88■□□□□ 0.13
NPLOC4-202ENST00000374747 KIF3BO15066 747 aa15.88■□□□□ 0.13
NPLOC4-202ENST00000374747 LAMC3Q9Y6N6 1575 aa15.87■□□□□ 0.13
NPLOC4-202ENST00000374747 HSPA5P11021 654 aaKnown RBP15.87■□□□□ 0.13
NPLOC4-202ENST00000374747 FTSJ3Q8IY81 847 aaKnown RBP15.86■□□□□ 0.13
NPLOC4-202ENST00000374747 TIAM1Q13009 1591 aa15.84■□□□□ 0.13
NPLOC4-202ENST00000374747 WDR97A6NE52 1622 aa15.84■□□□□ 0.13
NPLOC4-202ENST00000374747 EFCAB5A4FU69 1503 aa15.83■□□□□ 0.12
NPLOC4-202ENST00000374747 SENP3-EIF4A1A0A087X0R7 540 aa15.83■□□□□ 0.12
NPLOC4-202ENST00000374747 RGS3P49796 1198 aa15.83■□□□□ 0.12
NPLOC4-202ENST00000374747 MYOM3Q5VTT5 1437 aa15.82■□□□□ 0.12
NPLOC4-202ENST00000374747 FGD6Q6ZV73 1430 aa15.81■□□□□ 0.12
NPLOC4-202ENST00000374747 FYCO1Q9BQS8 1478 aa15.81■□□□□ 0.12
NPLOC4-202ENST00000374747 L3MBTL2Q969R5 705 aa15.8■□□□□ 0.12
NPLOC4-202ENST00000374747 ROCK2O75116 1388 aaKnown RBP15.8■□□□□ 0.12
NPLOC4-202ENST00000374747 NUDCQ9Y266 331 aa15.79■□□□□ 0.12
NPLOC4-202ENST00000374747 ABCA10Q8WWZ4 1543 aa15.79■□□□□ 0.12
NPLOC4-202ENST00000374747 TSHZ2Q9NRE2 1034 aa15.78■□□□□ 0.12
NPLOC4-202ENST00000374747 CCER2I3L3R5 266 aa15.78■□□□□ 0.12
NPLOC4-202ENST00000374747 DEKP35659 375 aaKnown RBP15.78■□□□□ 0.12
NPLOC4-202ENST00000374747 TPRNQ4KMQ1 711 aa15.78■□□□□ 0.12
NPLOC4-202ENST00000374747 B4GALNT3Q6L9W6 998 aa15.77■□□□□ 0.12
NPLOC4-202ENST00000374747 CC2D1BQ5T0F9 858 aaKnown RBP15.77■□□□□ 0.12
NPLOC4-202ENST00000374747 WASHC2CQ9Y4E1 1318 aa15.77■□□□□ 0.11
NPLOC4-202ENST00000374747 HSP90AB1P08238 724 aaKnown RBP15.77■□□□□ 0.11
NPLOC4-202ENST00000374747 PRDM2Q13029 1718 aa15.77■□□□□ 0.11
NPLOC4-202ENST00000374747 PLCB2Q00722 1185 aa15.76■□□□□ 0.11
NPLOC4-202ENST00000374747 CYB5RLQ6IPT4 315 aa15.76■□□□□ 0.11
NPLOC4-202ENST00000374747 ZBTB7CA1YPR0 619 aa15.76■□□□□ 0.11
NPLOC4-202ENST00000374747 L1TD1Q5T7N2 865 aaKnown RBP15.75■□□□□ 0.11
NPLOC4-202ENST00000374747 SNAPC4Q5SXM2 1469 aa15.75■□□□□ 0.11
NPLOC4-202ENST00000374747 NCOA2Q15596 1464 aa15.74■□□□□ 0.11
NPLOC4-202ENST00000374747 GOLGA6L6A8MZA4 724 aa15.74■□□□□ 0.11
NPLOC4-202ENST00000374747 SRPK2P78362 688 aaKnown RBP15.74■□□□□ 0.11
NPLOC4-202ENST00000374747 CHMP4BQ9H444 224 aaKnown RBP15.74■□□□□ 0.11
NPLOC4-202ENST00000374747 PCF11O94913 1555 aaKnown RBP15.74■□□□□ 0.11
NPLOC4-202ENST00000374747 PTPRKQ15262 1439 aa15.74■□□□□ 0.11
NPLOC4-202ENST00000374747 PRG4Q92954 1404 aaPredicted RBP15.74■□□□□ 0.11
NPLOC4-202ENST00000374747 MAPK8IP3Q9UPT6 1336 aa15.73■□□□□ 0.11
NPLOC4-202ENST00000374747 EIF3AQ14152 1382 aaKnown RBP15.73■□□□□ 0.11
NPLOC4-202ENST00000374747 FRAT1Q92837 279 aaPredicted RBP15.73■□□□□ 0.11
NPLOC4-202ENST00000374747 MS4A1P11836 297 aa15.72■□□□□ 0.11
NPLOC4-202ENST00000374747 NEUROD2Q15784 382 aa15.72■□□□□ 0.11
NPLOC4-202ENST00000374747 CCDC144AA2RUR9 1427 aa15.72■□□□□ 0.11
NPLOC4-202ENST00000374747 SYNJ2O15056 1496 aa15.72■□□□□ 0.11
NPLOC4-202ENST00000374747 RBM19Q9Y4C8 960 aaKnown RBP15.71■□□□□ 0.11
NPLOC4-202ENST00000374747 NRDCO43847 1150 aa15.71■□□□□ 0.11
NPLOC4-202ENST00000374747 CHAF1AQ13111 956 aaPredicted RBP15.7■□□□□ 0.1
NPLOC4-202ENST00000374747 HSCBQ8IWL3 235 aa15.7■□□□□ 0.1
NPLOC4-202ENST00000374747 MSNP26038 577 aaKnown RBP15.7■□□□□ 0.1
NPLOC4-202ENST00000374747 PLEKHG5O94827 1062 aa15.69■□□□□ 0.1
NPLOC4-202ENST00000374747 KTN1Q86UP2 1357 aaKnown RBP15.69■□□□□ 0.1
NPLOC4-202ENST00000374747 PNNQ9H307 717 aaKnown RBP15.69■□□□□ 0.1
NPLOC4-202ENST00000374747 STK26Q9P289 416 aa15.69■□□□□ 0.1
NPLOC4-202ENST00000374747 SAFB2Q14151 953 aaKnown RBP eCLIP15.68■□□□□ 0.1
NPLOC4-202ENST00000374747 ZNF644Q9H582 1327 aaPredicted RBP15.68■□□□□ 0.1
NPLOC4-202ENST00000374747 MAP3K1Q13233 1512 aa15.68■□□□□ 0.1
NPLOC4-202ENST00000374747 MORC1Q86VD1 984 aa15.68■□□□□ 0.1
NPLOC4-202ENST00000374747 HAP1P54257 671 aaPredicted RBP15.67■□□□□ 0.1
NPLOC4-202ENST00000374747 A0A0G2JS52 829 aa15.67■□□□□ 0.1
NPLOC4-202ENST00000374747 UACAQ9BZF9 1416 aa15.67■□□□□ 0.1
NPLOC4-202ENST00000374747 KIAA0586Q9BVV6 1533 aa15.67■□□□□ 0.1
NPLOC4-202ENST00000374747 HDGFL2Q7Z4V5 671 aaPredicted RBP15.66■□□□□ 0.1
NPLOC4-202ENST00000374747 RALBP1Q15311 655 aa15.66■□□□□ 0.1
NPLOC4-202ENST00000374747 KIF15Q9NS87 1388 aa15.65■□□□□ 0.1
NPLOC4-202ENST00000374747 CUL7Q14999 1698 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 342.8 ms