RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CHMP4BQ9H444 224 aaKnown RBP14.78□□□□□ -0.04
PTPRF-203ENST00000372407 PTMAP06454 111 aaKnown RBP14.77□□□□□ -0.04
PTPRF-203ENST00000372407 ZBTB7CA1YPR0 619 aa14.77□□□□□ -0.05
PTPRF-203ENST00000372407 EFCAB2Q5VUJ9 269 aa14.76□□□□□ -0.05
PTPRF-203ENST00000372407 POLA1P09884 1462 aaPredicted RBP14.76□□□□□ -0.05
PTPRF-203ENST00000372407 CC2D1BQ5T0F9 858 aaKnown RBP14.75□□□□□ -0.05
PTPRF-203ENST00000372407 TMF1P82094 1093 aa14.75□□□□□ -0.05
PTPRF-203ENST00000372407 PLEKHG5O94827 1062 aa14.74□□□□□ -0.05
PTPRF-203ENST00000372407 DCAF11Q8TEB1 546 aa14.74□□□□□ -0.05
PTPRF-203ENST00000372407 DNMBPQ6XZF7 1577 aa14.74□□□□□ -0.05
PTPRF-203ENST00000372407 FHOD3Q2V2M9 1422 aa14.74□□□□□ -0.05
PTPRF-203ENST00000372407 ZRSR1Q15695 479 aaKnown RBP14.73□□□□□ -0.05
PTPRF-203ENST00000372407 A0A0G2JS52 829 aa14.73□□□□□ -0.05
PTPRF-203ENST00000372407 MLECQ14165 292 aa14.73□□□□□ -0.05
PTPRF-203ENST00000372407 CDK11BP21127 795 aaKnown RBP14.73□□□□□ -0.05
PTPRF-203ENST00000372407 POGKQ9P215 609 aa14.73□□□□□ -0.05
PTPRF-203ENST00000372407 RUSC2Q8N2Y8 1516 aa14.73□□□□□ -0.05
PTPRF-203ENST00000372407 TNNT2P45379 298 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-203ENST00000372407 DNTTIP2Q5QJE6 756 aaKnown RBP14.7□□□□□ -0.06
PTPRF-203ENST00000372407 SETD5Q9C0A6 1442 aa14.7□□□□□ -0.06
PTPRF-203ENST00000372407 VPS8Q8N3P4 1428 aa14.7□□□□□ -0.06
PTPRF-203ENST00000372407 U2SURPO15042 1029 aaKnown RBP14.7□□□□□ -0.06
PTPRF-203ENST00000372407 RBM19Q9Y4C8 960 aaKnown RBP14.7□□□□□ -0.06
PTPRF-203ENST00000372407 HSPA5P11021 654 aaKnown RBP14.69□□□□□ -0.06
PTPRF-203ENST00000372407 PNNQ9H307 717 aaKnown RBP14.68□□□□□ -0.06
PTPRF-203ENST00000372407 CUX1P39880 1505 aa14.67□□□□□ -0.06
PTPRF-203ENST00000372407 HSP90AB1P08238 724 aaKnown RBP14.67□□□□□ -0.06
PTPRF-203ENST00000372407 SNAPC4Q5SXM2 1469 aa14.66□□□□□ -0.06
PTPRF-203ENST00000372407 RTN4Q9NQC3 1192 aaKnown RBP14.65□□□□□ -0.06
PTPRF-203ENST00000372407 NAP1L5Q96NT1 182 aaPredicted RBP14.65□□□□□ -0.06
PTPRF-203ENST00000372407 FAM69CQ0P6D2 419 aa14.64□□□□□ -0.07
PTPRF-203ENST00000372407 KANK4Q5T7N3 995 aaPredicted RBP14.64□□□□□ -0.07
PTPRF-203ENST00000372407 SYNJ1O43426 1573 aa14.63□□□□□ -0.07
PTPRF-203ENST00000372407 TPRNQ4KMQ1 711 aa14.63□□□□□ -0.07
PTPRF-203ENST00000372407 HSCBQ8IWL3 235 aa14.62□□□□□ -0.07
PTPRF-203ENST00000372407 PRG4Q92954 1404 aaPredicted RBP14.62□□□□□ -0.07
PTPRF-203ENST00000372407 GGT6Q6P531 493 aa14.62□□□□□ -0.07
PTPRF-203ENST00000372407 PLCB2Q00722 1185 aa14.61□□□□□ -0.07
PTPRF-203ENST00000372407 PKD2Q13563 968 aa14.61□□□□□ -0.07
PTPRF-203ENST00000372407 MORC1Q86VD1 984 aa14.61□□□□□ -0.07
PTPRF-203ENST00000372407 TOP2BQ02880 1626 aa14.6□□□□□ -0.07
PTPRF-203ENST00000372407 HAP1P54257 671 aaPredicted RBP14.6□□□□□ -0.07
PTPRF-203ENST00000372407 KANK1Q14678 1352 aa14.6□□□□□ -0.07
PTPRF-203ENST00000372407 DEKP35659 375 aaKnown RBP14.6□□□□□ -0.07
PTPRF-203ENST00000372407 URB2Q14146 1524 aaKnown RBP14.59□□□□□ -0.07
PTPRF-203ENST00000372407 ARHGAP35Q9NRY4 1499 aa14.59□□□□□ -0.07
PTPRF-203ENST00000372407 FGD1P98174 961 aa14.59□□□□□ -0.07
PTPRF-203ENST00000372407 OS9Q13438 667 aaPredicted RBP14.59□□□□□ -0.07
PTPRF-203ENST00000372407 CCDC18Q5T9S5 1454 aa14.58□□□□□ -0.07
PTPRF-203ENST00000372407 KTN1Q86UP2 1357 aaKnown RBP14.58□□□□□ -0.07
PTPRF-203ENST00000372407 KCNJ4P48050 445 aa14.58□□□□□ -0.07
PTPRF-203ENST00000372407 RAB3GAP2Q9H2M9 1393 aa14.58□□□□□ -0.08
PTPRF-203ENST00000372407 RCAN3Q9UKA8 241 aa14.58□□□□□ -0.08
PTPRF-203ENST00000372407 L1TD1Q5T7N2 865 aaKnown RBP14.58□□□□□ -0.08
PTPRF-203ENST00000372407 CFAP44Q96MT7 982 aa14.57□□□□□ -0.08
PTPRF-203ENST00000372407 LMOD2Q6P5Q4 547 aa14.56□□□□□ -0.08
PTPRF-203ENST00000372407 TCERG1O14776 1098 aaKnown RBP14.56□□□□□ -0.08
PTPRF-203ENST00000372407 SRPK2P78362 688 aaKnown RBP14.56□□□□□ -0.08
PTPRF-203ENST00000372407 RALBP1Q15311 655 aa14.56□□□□□ -0.08
PTPRF-203ENST00000372407 MPHOSPH9Q99550 1183 aa14.56□□□□□ -0.08
PTPRF-203ENST00000372407 ABCA10Q8WWZ4 1543 aa14.55□□□□□ -0.08
PTPRF-203ENST00000372407 NRDCO43847 1150 aa14.55□□□□□ -0.08
PTPRF-203ENST00000372407 FOXD1Q16676 465 aa14.55□□□□□ -0.08
PTPRF-203ENST00000372407 SPAG9O60271 1321 aaKnown RBP14.55□□□□□ -0.08
PTPRF-203ENST00000372407 IPO8O15397 1037 aaKnown RBP14.54□□□□□ -0.08
PTPRF-203ENST00000372407 GOLGA6L4A6NEF3 574 aa14.54□□□□□ -0.08
PTPRF-203ENST00000372407 RSPH4AQ5TD94 716 aa14.54□□□□□ -0.08
PTPRF-203ENST00000372407 HNRNPMP52272 730 aaKnown RBP eCLIP14.53□□□□□ -0.08
PTPRF-203ENST00000372407 MCCP23508 829 aa14.52□□□□□ -0.09
PTPRF-203ENST00000372407 SYNJ2O15056 1496 aa14.51□□□□□ -0.09
PTPRF-203ENST00000372407 GOLGA6L6A8MZA4 724 aa14.51□□□□□ -0.09
PTPRF-203ENST00000372407 HDGFP51858 240 aaKnown RBP14.51□□□□□ -0.09
PTPRF-203ENST00000372407 TSHZ2Q9NRE2 1034 aa14.51□□□□□ -0.09
PTPRF-203ENST00000372407 MAGI1Q96QZ7 1491 aaPredicted RBP14.5□□□□□ -0.09
PTPRF-203ENST00000372407 RWDD1Q9H446 243 aaPredicted RBP14.5□□□□□ -0.09
PTPRF-203ENST00000372407 ZNF608Q9ULD9 1512 aaPredicted RBP14.5□□□□□ -0.09
PTPRF-203ENST00000372407 SAFB2Q14151 953 aaKnown RBP eCLIP14.49□□□□□ -0.09
PTPRF-203ENST00000372407 KIF3BO15066 747 aa14.49□□□□□ -0.09
PTPRF-203ENST00000372407 NUP155O75694 1391 aa14.49□□□□□ -0.09
PTPRF-203ENST00000372407 U2AF1L5P0DN76 240 aaPredicted RBP14.49□□□□□ -0.09
PTPRF-203ENST00000372407 MSNP26038 577 aaKnown RBP14.49□□□□□ -0.09
PTPRF-203ENST00000372407 U2AF1Q01081 240 aaKnown RBP eCLIP14.49□□□□□ -0.09
PTPRF-203ENST00000372407 SPRYD3Q8NCJ5 442 aa14.49□□□□□ -0.09
PTPRF-203ENST00000372407 L3MBTL2Q969R5 705 aa14.48□□□□□ -0.09
PTPRF-203ENST00000372407 NAP1L2Q9ULW6 460 aaPredicted RBP14.47□□□□□ -0.09
PTPRF-203ENST00000372407 ROCK2O75116 1388 aaKnown RBP14.47□□□□□ -0.09
PTPRF-203ENST00000372407 CHAF1AQ13111 956 aaPredicted RBP14.47□□□□□ -0.09
PTPRF-203ENST00000372407 NLRP13Q86W25 1043 aa14.47□□□□□ -0.09
PTPRF-203ENST00000372407 ANKRD30AQ9BXX3 1397 aa14.47□□□□□ -0.09
PTPRF-203ENST00000372407 SOX12O15370 315 aa14.46□□□□□ -0.09
PTPRF-203ENST00000372407 CALD1Q05682 793 aaKnown RBP14.46□□□□□ -0.09
PTPRF-203ENST00000372407 PDE3BQ13370 1112 aa14.46□□□□□ -0.09
PTPRF-203ENST00000372407 HDGFL2Q7Z4V5 671 aaPredicted RBP14.46□□□□□ -0.09
PTPRF-203ENST00000372407 GBP4Q96PP9 640 aa14.46□□□□□ -0.09
PTPRF-203ENST00000372407 RTF1Q92541 710 aaKnown RBP14.46□□□□□ -0.1
PTPRF-203ENST00000372407 KIAA0586Q9BVV6 1533 aa14.45□□□□□ -0.1
PTPRF-203ENST00000372407 TAOK2Q9UL54 1235 aa14.45□□□□□ -0.1
PTPRF-203ENST00000372407 SLKQ9H2G2 1235 aaPredicted RBP14.45□□□□□ -0.1
PTPRF-203ENST00000372407 GOLGA2Q08379 1002 aa14.44□□□□□ -0.1
PTPRF-203ENST00000372407 IPO9Q96P70 1041 aaKnown RBP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms