RNA–Protein interactions for RNA: ENST00000370544.9

LMO4-202, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 5,405 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-202ENST00000370544 EFCAB2Q5VUJ9 269 aa25.33■■□□□ 1.64
LMO4-202ENST00000370544 CDK11BP21127 795 aaKnown RBP25.32■■□□□ 1.64
LMO4-202ENST00000370544 B4GALNT3Q6L9W6 998 aa25.32■■□□□ 1.64
LMO4-202ENST00000370544 SOX12O15370 315 aa25.31■■□□□ 1.64
LMO4-202ENST00000370544 RAPGEF2Q9Y4G8 1499 aa25.31■■□□□ 1.64
LMO4-202ENST00000370544 ROCK2O75116 1388 aaKnown RBP25.31■■□□□ 1.64
LMO4-202ENST00000370544 OS9Q13438 667 aaPredicted RBP25.31■■□□□ 1.64
LMO4-202ENST00000370544 STK26Q9P289 416 aa25.3■■□□□ 1.64
LMO4-202ENST00000370544 CADPSQ9ULU8 1353 aa25.3■■□□□ 1.64
LMO4-202ENST00000370544 GLIPR1L2Q4G1C9 344 aa25.28■■□□□ 1.64
LMO4-202ENST00000370544 FHOD3Q2V2M9 1422 aa25.27■■□□□ 1.64
LMO4-202ENST00000370544 ZRSR1Q15695 479 aaKnown RBP25.27■■□□□ 1.64
LMO4-202ENST00000370544 HDGFL2Q7Z4V5 671 aaPredicted RBP25.26■■□□□ 1.63
LMO4-202ENST00000370544 TPRNQ4KMQ1 711 aa25.23■■□□□ 1.63
LMO4-202ENST00000370544 NPHP1O15259 732 aa25.2■■□□□ 1.62
LMO4-202ENST00000370544 HSP90AB1P08238 724 aaKnown RBP25.19■■□□□ 1.62
LMO4-202ENST00000370544 PTMAP06454 111 aaKnown RBP25.19■■□□□ 1.62
LMO4-202ENST00000370544 NOP58Q9Y2X3 529 aaKnown RBP25.19■■□□□ 1.62
LMO4-202ENST00000370544 RALBP1Q15311 655 aa25.18■■□□□ 1.62
LMO4-202ENST00000370544 HNRNPMP52272 730 aaKnown RBP eCLIP25.18■■□□□ 1.62
LMO4-202ENST00000370544 CCDC18Q5T9S5 1454 aa25.18■■□□□ 1.62
LMO4-202ENST00000370544 RTF1Q92541 710 aaKnown RBP25.17■■□□□ 1.62
LMO4-202ENST00000370544 ATAD2BQ9ULI0 1458 aa25.16■■□□□ 1.62
LMO4-202ENST00000370544 EIF3AQ14152 1382 aaKnown RBP25.16■■□□□ 1.62
LMO4-202ENST00000370544 KIF3BO15066 747 aa25.15■■□□□ 1.62
LMO4-202ENST00000370544 KCNJ4P48050 445 aa25.15■■□□□ 1.62
LMO4-202ENST00000370544 FGD1P98174 961 aa25.13■■□□□ 1.61
LMO4-202ENST00000370544 SMARCA4P51532 1647 aa25.11■■□□□ 1.61
LMO4-202ENST00000370544 U2AF1L5P0DN76 240 aaPredicted RBP25.11■■□□□ 1.61
LMO4-202ENST00000370544 U2AF1Q01081 240 aaKnown RBP eCLIP25.11■■□□□ 1.61
LMO4-202ENST00000370544 RSPH4AQ5TD94 716 aa25.1■■□□□ 1.61
LMO4-202ENST00000370544 L3MBTL2Q969R5 705 aa25.1■■□□□ 1.61
LMO4-202ENST00000370544 SPAG9O60271 1321 aaKnown RBP25.09■■□□□ 1.61
LMO4-202ENST00000370544 IPO8O15397 1037 aaKnown RBP25.07■■□□□ 1.6
LMO4-202ENST00000370544 HSCBQ8IWL3 235 aa25.07■■□□□ 1.6
LMO4-202ENST00000370544 TAOK2Q9UL54 1235 aa25.07■■□□□ 1.6
LMO4-202ENST00000370544 PAK3O75914 559 aaPredicted RBP25.06■■□□□ 1.6
LMO4-202ENST00000370544 GOLGA2Q08379 1002 aa25.06■■□□□ 1.6
LMO4-202ENST00000370544 CALD1Q05682 793 aaKnown RBP25.05■■□□□ 1.6
LMO4-202ENST00000370544 JPH4Q96JJ6 628 aa25.05■■□□□ 1.6
LMO4-202ENST00000370544 RCAN3Q9UKA8 241 aa25.05■■□□□ 1.6
LMO4-202ENST00000370544 NAP1L2Q9ULW6 460 aaPredicted RBP25.04■■□□□ 1.6
LMO4-202ENST00000370544 MCCP23508 829 aa25.02■■□□□ 1.6
LMO4-202ENST00000370544 FANCD2Q9BXW9 1451 aa25■■□□□ 1.59
LMO4-202ENST00000370544 DNTTIP2Q5QJE6 756 aaKnown RBP25■■□□□ 1.59
LMO4-202ENST00000370544 WASHC2CQ9Y4E1 1318 aa25■■□□□ 1.59
LMO4-202ENST00000370544 CFAP44Q96MT7 982 aa25■■□□□ 1.59
LMO4-202ENST00000370544 ERICH6BQ5W0A0 696 aa24.98■■□□□ 1.59
LMO4-202ENST00000370544 TERF2IPQ9NYB0 399 aa24.98■■□□□ 1.59
LMO4-202ENST00000370544 PLCB2Q00722 1185 aa24.98■■□□□ 1.59
LMO4-202ENST00000370544 ITPRIPQ8IWB1 547 aa24.96■■□□□ 1.59
LMO4-202ENST00000370544 NUTM2DQ5VT03 806 aaPredicted RBP24.96■■□□□ 1.59
LMO4-202ENST00000370544 RUSC2Q8N2Y8 1516 aa24.95■■□□□ 1.59
LMO4-202ENST00000370544 APBB1O00213 710 aa24.95■■□□□ 1.58
LMO4-202ENST00000370544 CSB-PGBD3P0DP91 1061 aa24.94■■□□□ 1.58
LMO4-202ENST00000370544 RWDD1Q9H446 243 aaPredicted RBP24.93■■□□□ 1.58
LMO4-202ENST00000370544 TULP1O00294 542 aaPredicted RBP24.91■■□□□ 1.58
LMO4-202ENST00000370544 NLRP13Q86W25 1043 aa24.91■■□□□ 1.58
LMO4-202ENST00000370544 SPRYD3Q8NCJ5 442 aa24.91■■□□□ 1.58
LMO4-202ENST00000370544 GOLGA6L4A6NEF3 574 aa24.9■■□□□ 1.58
LMO4-202ENST00000370544 EID1Q9Y6B2 187 aa24.9■■□□□ 1.58
LMO4-202ENST00000370544 CCDC144AA2RUR9 1427 aa24.89■■□□□ 1.57
LMO4-202ENST00000370544 GOLGA6L6A8MZA4 724 aa24.88■■□□□ 1.57
LMO4-202ENST00000370544 RBM19Q9Y4C8 960 aaKnown RBP24.87■■□□□ 1.57
LMO4-202ENST00000370544 DHX57Q6P158 1386 aaKnown RBP24.87■■□□□ 1.57
LMO4-202ENST00000370544 CCDC146Q8IYE0 955 aa24.87■■□□□ 1.57
LMO4-202ENST00000370544 SMC4Q9NTJ3 1288 aa24.85■■□□□ 1.57
LMO4-202ENST00000370544 STK31Q9BXU1 1019 aa24.84■■□□□ 1.57
LMO4-202ENST00000370544 PTPRGP23470 1445 aa24.84■■□□□ 1.57
LMO4-202ENST00000370544 KIF15Q9NS87 1388 aa24.84■■□□□ 1.57
LMO4-202ENST00000370544 KIAA1211Q6ZU35 1233 aa24.83■■□□□ 1.57
LMO4-202ENST00000370544 PMFBP1Q8TBY8 1022 aa24.83■■□□□ 1.57
LMO4-202ENST00000370544 TRAK1Q9UPV9 953 aa24.83■■□□□ 1.57
LMO4-202ENST00000370544 CHMP4AQ9BY43 222 aa24.83■■□□□ 1.56
LMO4-202ENST00000370544 PHLDB1Q86UU1 1377 aa24.82■■□□□ 1.56
LMO4-202ENST00000370544 TCERG1O14776 1098 aaKnown RBP24.82■■□□□ 1.56
LMO4-202ENST00000370544 NGDNQ8NEJ9 315 aaKnown RBP24.82■■□□□ 1.56
LMO4-202ENST00000370544 ZNF330Q9Y3S2 320 aaPredicted RBP24.81■■□□□ 1.56
LMO4-202ENST00000370544 ST20-MTHFSA0A0A6YYL1 179 aa24.8■■□□□ 1.56
LMO4-202ENST00000370544 PDE3BQ13370 1112 aa24.8■■□□□ 1.56
LMO4-202ENST00000370544 UACAQ9BZF9 1416 aa24.8■■□□□ 1.56
LMO4-202ENST00000370544 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.79■■□□□ 1.56
LMO4-202ENST00000370544 NAP1L5Q96NT1 182 aaPredicted RBP24.79■■□□□ 1.56
LMO4-202ENST00000370544 MYBBP1AQ9BQG0 1328 aaKnown RBP24.78■■□□□ 1.56
LMO4-202ENST00000370544 CENPJQ9HC77 1338 aaPredicted RBP24.78■■□□□ 1.56
LMO4-202ENST00000370544 NRDCO43847 1150 aa24.77■■□□□ 1.56
LMO4-202ENST00000370544 LMOD3Q0VAK6 560 aa24.77■■□□□ 1.56
LMO4-202ENST00000370544 FGD5Q6ZNL6 1462 aa24.76■■□□□ 1.55
LMO4-202ENST00000370544 PANK3Q9H999 370 aa24.76■■□□□ 1.55
LMO4-202ENST00000370544 AMPHP49418 695 aa24.75■■□□□ 1.55
LMO4-202ENST00000370544 RTN4Q9NQC3 1192 aaKnown RBP24.74■■□□□ 1.55
LMO4-202ENST00000370544 L1TD1Q5T7N2 865 aaKnown RBP24.74■■□□□ 1.55
LMO4-202ENST00000370544 GAPVD1Q14C86 1478 aa24.73■■□□□ 1.55
LMO4-202ENST00000370544 CLUAP1Q96AJ1 413 aa24.73■■□□□ 1.55
LMO4-202ENST00000370544 NUTM2FA1L443 756 aa24.72■■□□□ 1.55
LMO4-202ENST00000370544 HMMRO75330 724 aa24.72■■□□□ 1.55
LMO4-202ENST00000370544 GNL2Q13823 731 aaKnown RBP24.7■■□□□ 1.54
LMO4-202ENST00000370544 IGF1RP08069 1367 aa24.7■■□□□ 1.54
LMO4-202ENST00000370544 SLC4A10Q6U841 1118 aa24.69■■□□□ 1.54
LMO4-202ENST00000370544 GBP4Q96PP9 640 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms