RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 PREX2Q70Z35 1606 aa19.6■□□□□ 0.73
SQSTM1-201ENST00000360718 CAMSAP2Q08AD1 1489 aa19.59■□□□□ 0.73
SQSTM1-201ENST00000360718 NPM1P06748 294 aaKnown RBP eCLIP19.56■□□□□ 0.72
SQSTM1-201ENST00000360718 ZNF777Q9ULD5 760 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-201ENST00000360718 MYO5CQ9NQX4 1742 aa19.56■□□□□ 0.72
SQSTM1-201ENST00000360718 DNMT1P26358 1616 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-201ENST00000360718 SAMD9LQ8IVG5 1584 aa19.53■□□□□ 0.72
SQSTM1-201ENST00000360718 ABCC5O15440 1437 aa19.52■□□□□ 0.72
SQSTM1-201ENST00000360718 DAPK1P53355 1430 aa19.52■□□□□ 0.72
SQSTM1-201ENST00000360718 ABCA9Q8IUA7 1624 aa19.52■□□□□ 0.71
SQSTM1-201ENST00000360718 ARHGAP5Q13017 1502 aa19.51■□□□□ 0.71
SQSTM1-201ENST00000360718 PLCH2O75038 1416 aa19.5■□□□□ 0.71
SQSTM1-201ENST00000360718 CHIC2Q9UKJ5 165 aa19.5■□□□□ 0.71
SQSTM1-201ENST00000360718 RAB3GAP2Q9H2M9 1393 aa19.49■□□□□ 0.71
SQSTM1-201ENST00000360718 MAPKBP1O60336 1514 aa19.48■□□□□ 0.71
SQSTM1-201ENST00000360718 SETD5Q9C0A6 1442 aa19.48■□□□□ 0.71
SQSTM1-201ENST00000360718 CROCC2H7BZ55 1655 aa19.47■□□□□ 0.71
SQSTM1-201ENST00000360718 MBD5Q9P267 1494 aa19.46■□□□□ 0.71
SQSTM1-201ENST00000360718 HFM1A2PYH4 1435 aa19.45■□□□□ 0.7
SQSTM1-201ENST00000360718 HNRNPMP52272 730 aaKnown RBP eCLIP19.45■□□□□ 0.75e-6■■■□□ 14.8
SQSTM1-201ENST00000360718 NAIPQ13075 1403 aa19.45■□□□□ 0.7
SQSTM1-201ENST00000360718 SYCP2Q9BX26 1530 aa19.44■□□□□ 0.7
SQSTM1-201ENST00000360718 RRP7BPQ9NSQ0 103 aa19.43■□□□□ 0.7
SQSTM1-201ENST00000360718 ARAP3Q8WWN8 1544 aa19.43■□□□□ 0.7
SQSTM1-201ENST00000360718 ARHGEF12Q9NZN5 1544 aa19.43■□□□□ 0.7
SQSTM1-201ENST00000360718 PELP1Q8IZL8 1130 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-201ENST00000360718 AKNAQ7Z591 1439 aa19.42■□□□□ 0.7
SQSTM1-201ENST00000360718 ARHGEF5Q12774 1597 aa19.42■□□□□ 0.7
SQSTM1-201ENST00000360718 GCC2Q8IWJ2 1684 aa19.41■□□□□ 0.7
SQSTM1-201ENST00000360718 EFCAB2Q5VUJ9 269 aa19.4■□□□□ 0.7
SQSTM1-201ENST00000360718 KDM6BO15054 1643 aa19.4■□□□□ 0.7
SQSTM1-201ENST00000360718 ABCC1P33527 1531 aa19.39■□□□□ 0.69
SQSTM1-201ENST00000360718 ADGBQ8N7X0 1667 aa19.38■□□□□ 0.69
SQSTM1-201ENST00000360718 ROCK1Q13464 1354 aa19.38■□□□□ 0.69
SQSTM1-201ENST00000360718 DHX57Q6P158 1386 aaKnown RBP19.38■□□□□ 0.69
SQSTM1-201ENST00000360718 FANCAO15360 1455 aa19.38■□□□□ 0.69
SQSTM1-201ENST00000360718 KIAA1107Q9UPP5 1409 aa19.38■□□□□ 0.69
SQSTM1-201ENST00000360718 CCDC141Q6ZP82 1450 aa19.37■□□□□ 0.69
SQSTM1-201ENST00000360718 SHANK2Q9UPX8 1470 aa19.36■□□□□ 0.69
SQSTM1-201ENST00000360718 CD109Q6YHK3 1445 aa19.36■□□□□ 0.69
SQSTM1-201ENST00000360718 ADGRL2O95490 1459 aa19.36■□□□□ 0.69
SQSTM1-201ENST00000360718 NCOA1Q15788 1441 aa19.36■□□□□ 0.69
SQSTM1-201ENST00000360718 C9orf84Q5VXU9 1444 aa19.36■□□□□ 0.69
SQSTM1-201ENST00000360718 PLEKHH2Q8IVE3 1493 aa19.35■□□□□ 0.69
SQSTM1-201ENST00000360718 DIP2BQ9P265 1576 aa19.34■□□□□ 0.69
SQSTM1-201ENST00000360718 TRAPPC8Q9Y2L5 1435 aa19.34■□□□□ 0.69
SQSTM1-201ENST00000360718 MAP3K4Q9Y6R4 1608 aa19.33■□□□□ 0.69
SQSTM1-201ENST00000360718 GLI2P10070 1586 aa19.32■□□□□ 0.68
SQSTM1-201ENST00000360718 TSPY4P0CV99 314 aa19.3■□□□□ 0.68
SQSTM1-201ENST00000360718 TSPY10P0CW01 314 aa19.3■□□□□ 0.68
SQSTM1-201ENST00000360718 RSPH4AQ5TD94 716 aa19.3■□□□□ 0.68
SQSTM1-201ENST00000360718 MAST1Q9Y2H9 1570 aa19.29■□□□□ 0.68
SQSTM1-201ENST00000360718 ADGRL1O94910 1474 aa19.29■□□□□ 0.68
SQSTM1-201ENST00000360718 ANKRD30AQ9BXX3 1397 aa19.29■□□□□ 0.68
SQSTM1-201ENST00000360718 DIEXFQ68CQ4 756 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-201ENST00000360718 FAM69CQ0P6D2 419 aa19.27■□□□□ 0.68
SQSTM1-201ENST00000360718 AFAP1Q8N556 730 aa19.27■□□□□ 0.68
SQSTM1-201ENST00000360718 SCAPERQ9BY12 1400 aa19.27■□□□□ 0.67
SQSTM1-201ENST00000360718 KIF13AQ9H1H9 1805 aa19.26■□□□□ 0.67
SQSTM1-201ENST00000360718 CFAP74Q9C0B2 1584 aa19.25■□□□□ 0.67
SQSTM1-201ENST00000360718 KIF15Q9NS87 1388 aa19.24■□□□□ 0.67
SQSTM1-201ENST00000360718 SCAF1Q9H7N4 1312 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-201ENST00000360718 CLSPNQ9HAW4 1339 aa19.24■□□□□ 0.67
SQSTM1-201ENST00000360718 PPRC1Q5VV67 1664 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-201ENST00000360718 TSPOAP1O95153 1857 aa19.23■□□□□ 0.67
SQSTM1-201ENST00000360718 DNAJC5Q9H3Z4 198 aa19.23■□□□□ 0.67
SQSTM1-201ENST00000360718 ANKRD50Q9ULJ7 1429 aa19.22■□□□□ 0.67
SQSTM1-201ENST00000360718 PLXNC1O60486 1568 aa19.22■□□□□ 0.67
SQSTM1-201ENST00000360718 ACIN1Q9UKV3 1341 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-201ENST00000360718 ZFYVE16Q7Z3T8 1539 aa19.21■□□□□ 0.67
SQSTM1-201ENST00000360718 NEO1Q92859 1461 aa19.21■□□□□ 0.67
SQSTM1-201ENST00000360718 DENND4BO75064 1496 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-201ENST00000360718 INO80Q9ULG1 1556 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-201ENST00000360718 SPAG9O60271 1321 aaKnown RBP19.18■□□□□ 0.66
SQSTM1-201ENST00000360718 ZNF316A6NFI3 1004 aaPredicted RBP19.17■□□□□ 0.66
SQSTM1-201ENST00000360718 TRIM52Q96A61 297 aa19.17■□□□□ 0.66
SQSTM1-201ENST00000360718 POGZQ7Z3K3 1410 aa19.17■□□□□ 0.66
SQSTM1-201ENST00000360718 ATP7AQ04656 1500 aa19.16■□□□□ 0.66
SQSTM1-201ENST00000360718 RTEL1-TNFRSF6BF6WH68 1400 aa19.16■□□□□ 0.66
SQSTM1-201ENST00000360718 ZNF518AQ6AHZ1 1483 aa19.16■□□□□ 0.66
SQSTM1-201ENST00000360718 CENPBP07199 599 aaPredicted RBP19.15■□□□□ 0.66
SQSTM1-201ENST00000360718 KDM5CP41229 1560 aa19.15■□□□□ 0.66
SQSTM1-201ENST00000360718 KIDINS220Q9ULH0 1771 aa19.15■□□□□ 0.66
SQSTM1-201ENST00000360718 RAPGEF3O95398 923 aa19.13■□□□□ 0.65
SQSTM1-201ENST00000360718 DUOX2Q9NRD8 1548 aa19.13■□□□□ 0.65
SQSTM1-201ENST00000360718 RICTORQ6R327 1708 aa19.13■□□□□ 0.65
SQSTM1-201ENST00000360718 PZPP20742 1482 aa19.12■□□□□ 0.65
SQSTM1-201ENST00000360718 MPHOSPH9Q99550 1183 aa19.11■□□□□ 0.65
SQSTM1-201ENST00000360718 FRMPD1Q5SYB0 1578 aa19.1■□□□□ 0.65
SQSTM1-201ENST00000360718 SIN3AQ96ST3 1273 aa19.08■□□□□ 0.65
SQSTM1-201ENST00000360718 HECW2Q9P2P5 1572 aa19.08■□□□□ 0.65
SQSTM1-201ENST00000360718 TEX14Q8IWB6 1497 aa19.08■□□□□ 0.64
SQSTM1-201ENST00000360718 ERBINQ96RT1 1412 aa19.08■□□□□ 0.64
SQSTM1-201ENST00000360718 MLH3Q9UHC1 1453 aa19.07■□□□□ 0.64
SQSTM1-201ENST00000360718 FOXD1Q16676 465 aa19.07■□□□□ 0.64
SQSTM1-201ENST00000360718 MYT1LQ9UL68 1186 aa19.07■□□□□ 0.64
SQSTM1-201ENST00000360718 KDM5DQ9BY66 1539 aa19.06■□□□□ 0.64
SQSTM1-201ENST00000360718 UNC13BO14795 1591 aa19.06■□□□□ 0.64
SQSTM1-201ENST00000360718 NUP155O75694 1391 aa19.06■□□□□ 0.64
SQSTM1-201ENST00000360718 SLC4A1APQ9BWU0 796 aaKnown RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms