RNA–Protein interactions for RNA: ENST00000357732.8

RTN4-204, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,390 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-204ENST00000357732 HNRNPUQ00839 825 aaKnown RBP eCLIP24.52■■□□□ 1.523e-6■□□□□ 10
RTN4-204ENST00000357732 DAPK1P53355 1430 aa24.49■■□□□ 1.51
RTN4-204ENST00000357732 ZNF608Q9ULD9 1512 aaPredicted RBP24.48■■□□□ 1.51
RTN4-204ENST00000357732 ANKRD30BQ9BXX2 1392 aa24.47■■□□□ 1.51
RTN4-204ENST00000357732 CCDC7Q96M83 1385 aa24.47■■□□□ 1.51
RTN4-204ENST00000357732 TEX14Q8IWB6 1497 aa24.46■■□□□ 1.51
RTN4-204ENST00000357732 L3MBTL2Q969R5 705 aa24.44■■□□□ 1.5
RTN4-204ENST00000357732 IFT140Q96RY7 1462 aa24.42■■□□□ 1.5
RTN4-204ENST00000357732 KIAA0556O60303 1618 aa24.41■■□□□ 1.5
RTN4-204ENST00000357732 ABCC5O15440 1437 aa24.41■■□□□ 1.5
RTN4-204ENST00000357732 SPATA31E1Q6ZUB1 1445 aa24.4■■□□□ 1.5
RTN4-204ENST00000357732 PRKRIP1Q9H875 184 aaPredicted RBP24.4■■□□□ 1.5
RTN4-204ENST00000357732 DISP1Q96F81 1524 aa24.4■■□□□ 1.5
RTN4-204ENST00000357732 KIAA0586Q9BVV6 1533 aa24.4■■□□□ 1.5
RTN4-204ENST00000357732 FANCIQ9NVI1 1328 aa24.38■■□□□ 1.49
RTN4-204ENST00000357732 FOXD1Q16676 465 aa24.37■■□□□ 1.49
RTN4-204ENST00000357732 CDK11AQ9UQ88 783 aaPredicted RBP24.37■■□□□ 1.49
RTN4-204ENST00000357732 ZBED9Q6R2W3 1325 aa24.37■■□□□ 1.49
RTN4-204ENST00000357732 RAPGEF6Q8TEU7 1601 aa24.36■■□□□ 1.49
RTN4-204ENST00000357732 NUP153P49790 1475 aaKnown RBP24.35■■□□□ 1.49
RTN4-204ENST00000357732 ITSN2Q9NZM3 1697 aa24.34■■□□□ 1.49
RTN4-204ENST00000357732 ADGBQ8N7X0 1667 aa24.33■■□□□ 1.49
RTN4-204ENST00000357732 ZNF644Q9H582 1327 aaPredicted RBP24.33■■□□□ 1.49
RTN4-204ENST00000357732 PPP4R2Q9NY27 417 aa24.33■■□□□ 1.49
RTN4-204ENST00000357732 GRIN2AQ12879 1464 aa24.31■■□□□ 1.48
RTN4-204ENST00000357732 ADGRL2O95490 1459 aa24.29■■□□□ 1.48
RTN4-204ENST00000357732 MBD5Q9P267 1494 aa24.29■■□□□ 1.48
RTN4-204ENST00000357732 C11orf95C9JLR9 678 aaPredicted RBP24.28■■□□□ 1.48
RTN4-204ENST00000357732 ADCY10Q96PN6 1610 aa24.28■■□□□ 1.48
RTN4-204ENST00000357732 NBPF8Q3BBV2 869 aa24.28■■□□□ 1.48
RTN4-204ENST00000357732 EIF4G3O43432 1585 aaKnown RBP24.27■■□□□ 1.48
RTN4-204ENST00000357732 KIF7Q2M1P5 1343 aa24.27■■□□□ 1.48
RTN4-204ENST00000357732 ARID4BQ4LE39 1312 aaPredicted RBP24.27■■□□□ 1.48
RTN4-204ENST00000357732 SLC4A1APQ9BWU0 796 aaKnown RBP24.27■■□□□ 1.48
RTN4-204ENST00000357732 MRS2Q9HD23 443 aa24.27■■□□□ 1.48
RTN4-204ENST00000357732 PZPP20742 1482 aa24.27■■□□□ 1.48
RTN4-204ENST00000357732 TROQ12816 1431 aaPredicted RBP24.26■■□□□ 1.47
RTN4-204ENST00000357732 CROCC2H7BZ55 1655 aa24.25■■□□□ 1.47
RTN4-204ENST00000357732 CAMSAP2Q08AD1 1489 aa24.24■■□□□ 1.47
RTN4-204ENST00000357732 KIF14Q15058 1648 aa24.23■■□□□ 1.47
RTN4-204ENST00000357732 PRG4Q92954 1404 aaPredicted RBP24.22■■□□□ 1.47
RTN4-204ENST00000357732 CCDC184Q52MB2 194 aa24.22■■□□□ 1.47
RTN4-204ENST00000357732 KIAA1107Q9UPP5 1409 aa24.21■■□□□ 1.47
RTN4-204ENST00000357732 FAM9BQ8IZU0 186 aa24.17■■□□□ 1.46
RTN4-204ENST00000357732 PLB1Q6P1J6 1458 aa24.17■■□□□ 1.46
RTN4-204ENST00000357732 GPATCH8Q9UKJ3 1502 aaKnown RBP24.16■■□□□ 1.46
RTN4-204ENST00000357732 SMG6Q86US8 1419 aaKnown RBP24.16■■□□□ 1.46
RTN4-204ENST00000357732 CEP170Q5SW79 1584 aa24.15■■□□□ 1.46
RTN4-204ENST00000357732 ROCK2O75116 1388 aaKnown RBP24.15■■□□□ 1.46
RTN4-204ENST00000357732 IRX6P78412 446 aaPredicted RBP24.15■■□□□ 1.46
RTN4-204ENST00000357732 CHMP7Q8WUX9 453 aaPredicted RBP24.15■■□□□ 1.46
RTN4-204ENST00000357732 CFDP1Q9UEE9 299 aaPredicted RBP24.15■■□□□ 1.46
RTN4-204ENST00000357732 UHRF1BP1Q6BDS2 1440 aa24.15■■□□□ 1.46
RTN4-204ENST00000357732 DHX29Q7Z478 1369 aaKnown RBP24.14■■□□□ 1.46
RTN4-204ENST00000357732 KDM5CP41229 1560 aa24.14■■□□□ 1.46
RTN4-204ENST00000357732 MAGI1Q96QZ7 1491 aaPredicted RBP24.14■■□□□ 1.45
RTN4-204ENST00000357732 SHANK2Q9UPX8 1470 aa24.13■■□□□ 1.45
RTN4-204ENST00000357732 ARHGEF12Q9NZN5 1544 aa24.13■■□□□ 1.45
RTN4-204ENST00000357732 ANKRD30AQ9BXX3 1397 aa24.13■■□□□ 1.45
RTN4-204ENST00000357732 MSH5O43196 834 aa24.13■■□□□ 1.45
RTN4-204ENST00000357732 USP47Q96K76 1375 aa24.11■■□□□ 1.45
RTN4-204ENST00000357732 SYNJ2O15056 1496 aa24.1■■□□□ 1.45
RTN4-204ENST00000357732 ERCC6Q03468 1493 aa24.1■■□□□ 1.45
RTN4-204ENST00000357732 FBLN2P98095 1184 aa24.1■■□□□ 1.45
RTN4-204ENST00000357732 ZNF777Q9ULD5 760 aaPredicted RBP24.1■■□□□ 1.45
RTN4-204ENST00000357732 RALGAPBQ86X10 1494 aa24.1■■□□□ 1.45
RTN4-204ENST00000357732 BCORL1Q5H9F3 1711 aa24.09■■□□□ 1.45
RTN4-204ENST00000357732 KDM5DQ9BY66 1539 aa24.09■■□□□ 1.45
RTN4-204ENST00000357732 RNF123Q5XPI4 1314 aa24.06■■□□□ 1.44
RTN4-204ENST00000357732 KTN1Q86UP2 1357 aaKnown RBP24.06■■□□□ 1.44
RTN4-204ENST00000357732 MYT1LQ9UL68 1186 aa24.06■■□□□ 1.44
RTN4-204ENST00000357732 ANKRD50Q9ULJ7 1429 aa24.06■■□□□ 1.44
RTN4-204ENST00000357732 CARMIL2Q6F5E8 1435 aa24.04■■□□□ 1.44
RTN4-204ENST00000357732 ERICH6Q7L0X2 663 aa24.03■■□□□ 1.44
RTN4-204ENST00000357732 JPH4Q96JJ6 628 aa24.03■■□□□ 1.44
RTN4-204ENST00000357732 NUDCQ9Y266 331 aa24.02■■□□□ 1.44
RTN4-204ENST00000357732 NUP160Q12769 1436 aa24.01■■□□□ 1.43
RTN4-204ENST00000357732 PKD2Q13563 968 aa24■■□□□ 1.43
RTN4-204ENST00000357732 CDC42BPAQ5VT25 1732 aa23.99■■□□□ 1.43
RTN4-204ENST00000357732 B4GALNT3Q6L9W6 998 aa23.96■■□□□ 1.43
RTN4-204ENST00000357732 KIF15Q9NS87 1388 aa23.96■■□□□ 1.43
RTN4-204ENST00000357732 ABCC10Q5T3U5 1492 aa23.96■■□□□ 1.43
RTN4-204ENST00000357732 PTPRGP23470 1445 aa23.95■■□□□ 1.43
RTN4-204ENST00000357732 ARHGEF5Q12774 1597 aa23.95■■□□□ 1.42
RTN4-204ENST00000357732 C9orf84Q5VXU9 1444 aa23.95■■□□□ 1.42
RTN4-204ENST00000357732 ABCA8O94911 1581 aa23.95■■□□□ 1.42
RTN4-204ENST00000357732 PLEKHD1A6NEE1 506 aa23.93■■□□□ 1.42
RTN4-204ENST00000357732 E9PCH4 1651 aa23.92■■□□□ 1.42
RTN4-204ENST00000357732 ZNF326Q5BKZ1 582 aaKnown RBP23.92■■□□□ 1.42
RTN4-204ENST00000357732 PNISRQ8TF01 805 aaKnown RBP23.92■■□□□ 1.42
RTN4-204ENST00000357732 BRD4O60885 1362 aaPredicted RBP23.92■■□□□ 1.42
RTN4-204ENST00000357732 LRPPRCP42704 1394 aaKnown RBP23.91■■□□□ 1.42
RTN4-204ENST00000357732 BCL11AQ9H165 835 aa23.91■■□□□ 1.42
RTN4-204ENST00000357732 ATP10BO94823 1461 aa23.91■■□□□ 1.42
RTN4-204ENST00000357732 NUP155O75694 1391 aa23.9■■□□□ 1.42
RTN4-204ENST00000357732 RALBP1Q15311 655 aa23.88■■□□□ 1.41
RTN4-204ENST00000357732 CARD11Q9BXL7 1154 aa23.87■■□□□ 1.41
RTN4-204ENST00000357732 TMC1Q8TDI8 760 aa23.86■■□□□ 1.41
RTN4-204ENST00000357732 MYBBP1AQ9BQG0 1328 aaKnown RBP23.85■■□□□ 1.41
RTN4-204ENST00000357732 TSPY4P0CV99 314 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms