RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CHMP4BQ9H444 224 aaKnown RBP24.95■■□□□ 1.58
CCDC88B-202ENST00000356786 DCAF11Q8TEB1 546 aa24.95■■□□□ 1.58
CCDC88B-202ENST00000356786 PPP1R15AO75807 674 aaPredicted RBP24.94■■□□□ 1.58
CCDC88B-202ENST00000356786 RAPGEF2Q9Y4G8 1499 aa24.94■■□□□ 1.58
CCDC88B-202ENST00000356786 PLPPR3Q6T4P5 718 aa24.93■■□□□ 1.58
CCDC88B-202ENST00000356786 TMF1P82094 1093 aa24.91■■□□□ 1.58
CCDC88B-202ENST00000356786 RAB3GAP2Q9H2M9 1393 aa24.91■■□□□ 1.58
CCDC88B-202ENST00000356786 U2SURPO15042 1029 aaKnown RBP24.89■■□□□ 1.57
CCDC88B-202ENST00000356786 ARID3AQ99856 593 aa24.89■■□□□ 1.57
CCDC88B-202ENST00000356786 GBP4Q96PP9 640 aa24.88■■□□□ 1.57
CCDC88B-202ENST00000356786 USP35Q9P2H5 1018 aa24.88■■□□□ 1.57
CCDC88B-202ENST00000356786 GOLGA6L3A6NEY3 463 aa24.88■■□□□ 1.57
CCDC88B-202ENST00000356786 FANCIQ9NVI1 1328 aa24.85■■□□□ 1.57
CCDC88B-202ENST00000356786 ZBTB7CA1YPR0 619 aa24.83■■□□□ 1.57
CCDC88B-202ENST00000356786 AMER1Q5JTC6 1135 aaPredicted RBP24.83■■□□□ 1.57
CCDC88B-202ENST00000356786 FOXD1Q16676 465 aa24.82■■□□□ 1.56
CCDC88B-202ENST00000356786 NRDCO43847 1150 aa24.82■■□□□ 1.56
CCDC88B-202ENST00000356786 GOLGA6L4A6NEF3 574 aa24.82■■□□□ 1.56
CCDC88B-202ENST00000356786 KTN1Q86UP2 1357 aaKnown RBP24.81■■□□□ 1.56
CCDC88B-202ENST00000356786 FANCD2Q9BXW9 1451 aa24.81■■□□□ 1.56
CCDC88B-202ENST00000356786 GOLGA6L6A8MZA4 724 aa24.81■■□□□ 1.56
CCDC88B-202ENST00000356786 RALBP1Q15311 655 aa24.77■■□□□ 1.56
CCDC88B-202ENST00000356786 NCAPD3P42695 1498 aa24.77■■□□□ 1.56
CCDC88B-202ENST00000356786 PLEKHG5O94827 1062 aa24.76■■□□□ 1.55
CCDC88B-202ENST00000356786 KCNJ4P48050 445 aa24.76■■□□□ 1.55
CCDC88B-202ENST00000356786 GSE1Q14687 1217 aa24.76■■□□□ 1.55
CCDC88B-202ENST00000356786 ARHGAP35Q9NRY4 1499 aa24.75■■□□□ 1.55
CCDC88B-202ENST00000356786 FMN1Q68DA7 1419 aa24.75■■□□□ 1.55
CCDC88B-202ENST00000356786 KIAA2012Q0VF49 1180 aa24.75■■□□□ 1.55
CCDC88B-202ENST00000356786 C14orf37Q86TY3 774 aa24.75■■□□□ 1.55
CCDC88B-202ENST00000356786 FGD1P98174 961 aa24.75■■□□□ 1.55
CCDC88B-202ENST00000356786 RSPH6AQ9H0K4 717 aa24.75■■□□□ 1.55
CCDC88B-202ENST00000356786 RWDD1Q9H446 243 aaPredicted RBP24.75■■□□□ 1.55
CCDC88B-202ENST00000356786 PTMSP20962 102 aa24.75■■□□□ 1.55
CCDC88B-202ENST00000356786 HSP90AA2PQ14568 343 aaPredicted RBP24.75■■□□□ 1.55
CCDC88B-202ENST00000356786 PDE4AP27815 886 aa24.74■■□□□ 1.55
CCDC88B-202ENST00000356786 DRC7Q8IY82 874 aa24.73■■□□□ 1.55
CCDC88B-202ENST00000356786 SLC4A3P48751 1232 aa24.72■■□□□ 1.55
CCDC88B-202ENST00000356786 FHOD3Q2V2M9 1422 aa24.71■■□□□ 1.55
CCDC88B-202ENST00000356786 MFAP1P55081 439 aaKnown RBP24.71■■□□□ 1.55
CCDC88B-202ENST00000356786 TAOK2Q9UL54 1235 aa24.71■■□□□ 1.55
CCDC88B-202ENST00000356786 MORC1Q86VD1 984 aa24.7■■□□□ 1.54
CCDC88B-202ENST00000356786 MCCP23508 829 aa24.7■■□□□ 1.54
CCDC88B-202ENST00000356786 PKD2Q13563 968 aa24.69■■□□□ 1.54
CCDC88B-202ENST00000356786 OS9Q13438 667 aaPredicted RBP24.69■■□□□ 1.54
CCDC88B-202ENST00000356786 CFAP44Q96MT7 982 aa24.68■■□□□ 1.54
CCDC88B-202ENST00000356786 MPHOSPH9Q99550 1183 aa24.68■■□□□ 1.54
CCDC88B-202ENST00000356786 VSIG10Q8N0Z9 540 aa24.67■■□□□ 1.54
CCDC88B-202ENST00000356786 PDE3BQ13370 1112 aa24.67■■□□□ 1.54
CCDC88B-202ENST00000356786 L3MBTL2Q969R5 705 aa24.66■■□□□ 1.54
CCDC88B-202ENST00000356786 DHX57Q6P158 1386 aaKnown RBP24.66■■□□□ 1.54
CCDC88B-202ENST00000356786 POGKQ9P215 609 aa24.65■■□□□ 1.54
CCDC88B-202ENST00000356786 IPO8O15397 1037 aaKnown RBP24.65■■□□□ 1.54
CCDC88B-202ENST00000356786 APBB1O00213 710 aa24.64■■□□□ 1.54
CCDC88B-202ENST00000356786 CARMIL2Q6F5E8 1435 aa24.64■■□□□ 1.53
CCDC88B-202ENST00000356786 GOLGA2Q08379 1002 aa24.64■■□□□ 1.53
CCDC88B-202ENST00000356786 PMFBP1Q8TBY8 1022 aa24.64■■□□□ 1.53
CCDC88B-202ENST00000356786 NAP1L2Q9ULW6 460 aaPredicted RBP24.64■■□□□ 1.53
CCDC88B-202ENST00000356786 NLRP13Q86W25 1043 aa24.63■■□□□ 1.53
CCDC88B-202ENST00000356786 ITPRIPQ8IWB1 547 aa24.62■■□□□ 1.53
CCDC88B-202ENST00000356786 CALD1Q05682 793 aaKnown RBP24.62■■□□□ 1.53
CCDC88B-202ENST00000356786 FGD5Q6ZNL6 1462 aa24.6■■□□□ 1.53
CCDC88B-202ENST00000356786 EXOC6Q8TAG9 804 aa24.59■■□□□ 1.53
CCDC88B-202ENST00000356786 CLUAP1Q96AJ1 413 aa24.59■■□□□ 1.53
CCDC88B-202ENST00000356786 IGF1RP08069 1367 aa24.58■■□□□ 1.53
CCDC88B-202ENST00000356786 PRKRIP1Q9H875 184 aaPredicted RBP24.58■■□□□ 1.52
CCDC88B-202ENST00000356786 FAM161AQ3B820 660 aa24.57■■□□□ 1.52
CCDC88B-202ENST00000356786 SYAP1Q96A49 352 aaPredicted RBP24.57■■□□□ 1.52
CCDC88B-202ENST00000356786 A0A0G2JS52 829 aa24.57■■□□□ 1.52
CCDC88B-202ENST00000356786 ZBED9Q6R2W3 1325 aa24.57■■□□□ 1.52
CCDC88B-202ENST00000356786 FOXD4L1Q9NU39 408 aa24.56■■□□□ 1.52
CCDC88B-202ENST00000356786 U2AF1L5P0DN76 240 aaPredicted RBP24.55■■□□□ 1.52
CCDC88B-202ENST00000356786 U2AF1Q01081 240 aaKnown RBP eCLIP24.55■■□□□ 1.52
CCDC88B-202ENST00000356786 PLIN1O60240 522 aa24.53■■□□□ 1.52
CCDC88B-202ENST00000356786 ROCK2O75116 1388 aaKnown RBP24.53■■□□□ 1.52
CCDC88B-202ENST00000356786 CENPQQ7L2Z9 268 aaPredicted RBP24.52■■□□□ 1.52
CCDC88B-202ENST00000356786 RAD54L2Q9Y4B4 1467 aa24.51■■□□□ 1.51
CCDC88B-202ENST00000356786 RRP1P56182 461 aaKnown RBP24.51■■□□□ 1.51
CCDC88B-202ENST00000356786 HAP1P54257 671 aaPredicted RBP24.5■■□□□ 1.51
CCDC88B-202ENST00000356786 DDX11L8A8MPP1 907 aa24.49■■□□□ 1.51
CCDC88B-202ENST00000356786 CENPJQ9HC77 1338 aaPredicted RBP24.49■■□□□ 1.51
CCDC88B-202ENST00000356786 SRPK2P78362 688 aaKnown RBP24.48■■□□□ 1.51
CCDC88B-202ENST00000356786 KIAA1211Q6ZU35 1233 aa24.48■■□□□ 1.51
CCDC88B-202ENST00000356786 CCDC146Q8IYE0 955 aa24.48■■□□□ 1.51
CCDC88B-202ENST00000356786 SMC4Q9NTJ3 1288 aa24.48■■□□□ 1.51
CCDC88B-202ENST00000356786 TNNT3P45378 269 aaPredicted RBP24.45■■□□□ 1.51
CCDC88B-202ENST00000356786 JPH4Q96JJ6 628 aa24.45■■□□□ 1.5
CCDC88B-202ENST00000356786 CFTRP13569 1480 aa24.45■■□□□ 1.5
CCDC88B-202ENST00000356786 SAFB2Q14151 953 aaKnown RBP eCLIP24.45■■□□□ 1.5
CCDC88B-202ENST00000356786 CRBNQ96SW2 442 aa24.44■■□□□ 1.5
CCDC88B-202ENST00000356786 SYNJ1O43426 1573 aa24.44■■□□□ 1.5
CCDC88B-202ENST00000356786 DDX49Q9Y6V7 483 aaKnown RBP24.42■■□□□ 1.5
CCDC88B-202ENST00000356786 GAPVD1Q14C86 1478 aa24.42■■□□□ 1.5
CCDC88B-202ENST00000356786 MYBBP1AQ9BQG0 1328 aaKnown RBP24.42■■□□□ 1.5
CCDC88B-202ENST00000356786 NUP155O75694 1391 aa24.41■■□□□ 1.5
CCDC88B-202ENST00000356786 SOX12O15370 315 aa24.38■■□□□ 1.49
CCDC88B-202ENST00000356786 KIF15Q9NS87 1388 aa24.38■■□□□ 1.49
CCDC88B-202ENST00000356786 BICRAQ9NZM4 1560 aa24.37■■□□□ 1.49
CCDC88B-202ENST00000356786 TULP1O00294 542 aaPredicted RBP24.37■■□□□ 1.49
CCDC88B-202ENST00000356786 PHLDB1Q86UU1 1377 aa24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms