RNA–Protein interactions for RNA: ENST00000356435.9

PTPRD-202, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 9,472 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-202ENST00000356435 RTF1Q92541 710 aaKnown RBP7.07□□□□□ -1.28
PTPRD-202ENST00000356435 CFAP44Q96MT7 982 aa7.07□□□□□ -1.28
PTPRD-202ENST00000356435 IRX6P78412 446 aaPredicted RBP7.07□□□□□ -1.28
PTPRD-202ENST00000356435 HSP90AB1P08238 724 aaKnown RBP7.07□□□□□ -1.28
PTPRD-202ENST00000356435 RRBP1Q9P2E9 1410 aaKnown RBP7.07□□□□□ -1.28
PTPRD-202ENST00000356435 SRPK2P78362 688 aaKnown RBP7.06□□□□□ -1.28
PTPRD-202ENST00000356435 FRAT1Q92837 279 aaPredicted RBP7.06□□□□□ -1.28
PTPRD-202ENST00000356435 PPP4R2Q9NY27 417 aa7.06□□□□□ -1.28
PTPRD-202ENST00000356435 TMF1P82094 1093 aa7.06□□□□□ -1.28
PTPRD-202ENST00000356435 HDGFL2Q7Z4V5 671 aaPredicted RBP7.05□□□□□ -1.28
PTPRD-202ENST00000356435 CCDC9Q9Y3X0 531 aaKnown RBP7.05□□□□□ -1.28
PTPRD-202ENST00000356435 PLCB2Q00722 1185 aa7.05□□□□□ -1.28
PTPRD-202ENST00000356435 CHMP4AQ9BY43 222 aa7.05□□□□□ -1.28
PTPRD-202ENST00000356435 EIF3AQ14152 1382 aaKnown RBP7.04□□□□□ -1.28
PTPRD-202ENST00000356435 HSCBQ8IWL3 235 aa7.04□□□□□ -1.28
PTPRD-202ENST00000356435 SOX12O15370 315 aa7.04□□□□□ -1.28
PTPRD-202ENST00000356435 CALD1Q05682 793 aaKnown RBP7.04□□□□□ -1.28
PTPRD-202ENST00000356435 PRM3Q9NNZ6 103 aa7.04□□□□□ -1.28
PTPRD-202ENST00000356435 G3V3G9 751 aa7.03□□□□□ -1.28
PTPRD-202ENST00000356435 DCAF8Q5TAQ9 597 aa7.03□□□□□ -1.28
PTPRD-202ENST00000356435 MORC1Q86VD1 984 aa7.03□□□□□ -1.28
PTPRD-202ENST00000356435 CC2D1BQ5T0F9 858 aaKnown RBP7.03□□□□□ -1.28
PTPRD-202ENST00000356435 HIRIP3Q9BW71 556 aaPredicted RBP7.03□□□□□ -1.28
PTPRD-202ENST00000356435 FHAD1B1AJZ9 1412 aa7.03□□□□□ -1.28
PTPRD-202ENST00000356435 ZNF330Q9Y3S2 320 aaPredicted RBP7.03□□□□□ -1.28
PTPRD-202ENST00000356435 ERICH3Q5RHP9 1530 aa7.02□□□□□ -1.28
PTPRD-202ENST00000356435 PAK3O75914 559 aaPredicted RBP7.02□□□□□ -1.29
PTPRD-202ENST00000356435 NOC3LQ8WTT2 800 aaKnown RBP7.02□□□□□ -1.29
PTPRD-202ENST00000356435 RGS3P49796 1198 aa7.02□□□□□ -1.29
PTPRD-202ENST00000356435 KIAA1211Q6ZU35 1233 aa7.02□□□□□ -1.29
PTPRD-202ENST00000356435 CARMIL2Q6F5E8 1435 aa7.02□□□□□ -1.29
PTPRD-202ENST00000356435 HTATSF1O43719 755 aaKnown RBP7.01□□□□□ -1.29
PTPRD-202ENST00000356435 GPATCH3Q96I76 525 aa7.01□□□□□ -1.29
PTPRD-202ENST00000356435 SETD5Q9C0A6 1442 aa7.01□□□□□ -1.29
PTPRD-202ENST00000356435 USP35Q9P2H5 1018 aa7.01□□□□□ -1.29
PTPRD-202ENST00000356435 SMARCA2P51531 1590 aa7.01□□□□□ -1.29
PTPRD-202ENST00000356435 ABCC8Q09428 1581 aa7.01□□□□□ -1.29
PTPRD-202ENST00000356435 DRC7Q8IY82 874 aa7.01□□□□□ -1.29
PTPRD-202ENST00000356435 HDAC5Q9UQL6 1122 aa7□□□□□ -1.29
PTPRD-202ENST00000356435 SPAG9O60271 1321 aaKnown RBP7□□□□□ -1.29
PTPRD-202ENST00000356435 CCDC34Q96HJ3 373 aa7□□□□□ -1.29
PTPRD-202ENST00000356435 IPO8O15397 1037 aaKnown RBP7□□□□□ -1.29
PTPRD-202ENST00000356435 GORABQ5T7V8 394 aa7□□□□□ -1.29
PTPRD-202ENST00000356435 NOP58Q9Y2X3 529 aaKnown RBP7□□□□□ -1.29
PTPRD-202ENST00000356435 EID1Q9Y6B2 187 aa6.99□□□□□ -1.29
PTPRD-202ENST00000356435 SAFB2Q14151 953 aaKnown RBP eCLIP6.99□□□□□ -1.29
PTPRD-202ENST00000356435 KRI1Q8N9T8 703 aaKnown RBP6.99□□□□□ -1.29
PTPRD-202ENST00000356435 KTN1Q86UP2 1357 aaKnown RBP6.99□□□□□ -1.29
PTPRD-202ENST00000356435 WIZO95785 1651 aa6.98□□□□□ -1.29
PTPRD-202ENST00000356435 TAF7LQ5H9L4 462 aa6.98□□□□□ -1.29
PTPRD-202ENST00000356435 DCAF11Q8TEB1 546 aa6.98□□□□□ -1.29
PTPRD-202ENST00000356435 MAP3K1Q13233 1512 aa6.98□□□□□ -1.29
PTPRD-202ENST00000356435 TPM4P67936 248 aa6.98□□□□□ -1.29
PTPRD-202ENST00000356435 PTMSP20962 102 aa6.98□□□□□ -1.29
PTPRD-202ENST00000356435 NAP1L5Q96NT1 182 aaPredicted RBP6.98□□□□□ -1.29
PTPRD-202ENST00000356435 STK31Q9BXU1 1019 aa6.98□□□□□ -1.29
PTPRD-202ENST00000356435 DEKP35659 375 aaKnown RBP6.97□□□□□ -1.29
PTPRD-202ENST00000356435 GGT6Q6P531 493 aa6.97□□□□□ -1.29
PTPRD-202ENST00000356435 CHMP3Q9Y3E7 222 aa6.97□□□□□ -1.29
PTPRD-202ENST00000356435 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.97□□□□□ -1.29
PTPRD-202ENST00000356435 ARHGAP35Q9NRY4 1499 aa6.97□□□□□ -1.29
PTPRD-202ENST00000356435 STK26Q9P289 416 aa6.97□□□□□ -1.29
PTPRD-202ENST00000356435 RAB3GAP2Q9H2M9 1393 aa6.97□□□□□ -1.29
PTPRD-202ENST00000356435 RASSF8Q8NHQ8 419 aa6.97□□□□□ -1.29
PTPRD-202ENST00000356435 SMARCA4P51532 1647 aa6.96□□□□□ -1.29
PTPRD-202ENST00000356435 HSP90B1P14625 803 aaKnown RBP6.96□□□□□ -1.29
PTPRD-202ENST00000356435 VPS53Q5VIR6 699 aa6.96□□□□□ -1.3
PTPRD-202ENST00000356435 MSNP26038 577 aaKnown RBP6.95□□□□□ -1.3
PTPRD-202ENST00000356435 RAPGEF2Q9Y4G8 1499 aa6.95□□□□□ -1.3
PTPRD-202ENST00000356435 PRXQ9BXM0 1461 aa6.95□□□□□ -1.3
PTPRD-202ENST00000356435 GTF2E1P29083 439 aaPredicted RBP6.94□□□□□ -1.3
PTPRD-202ENST00000356435 MEX3CQ5U5Q3 659 aaKnown RBP6.94□□□□□ -1.3
PTPRD-202ENST00000356435 ROCK2O75116 1388 aaKnown RBP6.94□□□□□ -1.3
PTPRD-202ENST00000356435 SENP3-EIF4A1A0A087X0R7 540 aa6.94□□□□□ -1.3
PTPRD-202ENST00000356435 TERF2IPQ9NYB0 399 aa6.94□□□□□ -1.3
PTPRD-202ENST00000356435 HMMRO75330 724 aa6.94□□□□□ -1.3
PTPRD-202ENST00000356435 A0A0U1RQG5 324 aaPredicted RBP6.94□□□□□ -1.3
PTPRD-202ENST00000356435 ITPRIPQ8IWB1 547 aa6.94□□□□□ -1.3
PTPRD-202ENST00000356435 SYAP1Q96A49 352 aaPredicted RBP6.94□□□□□ -1.3
PTPRD-202ENST00000356435 CEP89Q96ST8 783 aa6.94□□□□□ -1.3
PTPRD-202ENST00000356435 APBB1O00213 710 aa6.93□□□□□ -1.3
PTPRD-202ENST00000356435 LMOD3Q0VAK6 560 aa6.93□□□□□ -1.3
PTPRD-202ENST00000356435 PDS5BQ9NTI5 1447 aa6.93□□□□□ -1.3
PTPRD-202ENST00000356435 TCEAL9Q9UHQ7 104 aa6.93□□□□□ -1.3
PTPRD-202ENST00000356435 FRAT2O75474 233 aaPredicted RBP6.93□□□□□ -1.3
PTPRD-202ENST00000356435 TRIM34Q9BYJ4 488 aa6.93□□□□□ -1.3
PTPRD-202ENST00000356435 CARMIL1Q5VZK9 1371 aa6.93□□□□□ -1.3
PTPRD-202ENST00000356435 MARCH6O60337 910 aa6.93□□□□□ -1.3
PTPRD-202ENST00000356435 AEBP2Q6ZN18 517 aaPredicted RBP6.92□□□□□ -1.3
PTPRD-202ENST00000356435 EFCAB2Q5VUJ9 269 aa6.92□□□□□ -1.3
PTPRD-202ENST00000356435 CTDP1Q9Y5B0 961 aaPredicted RBP6.92□□□□□ -1.3
PTPRD-202ENST00000356435 ANKRD30AQ9BXX3 1397 aa6.92□□□□□ -1.3
PTPRD-202ENST00000356435 GBP4Q96PP9 640 aa6.92□□□□□ -1.3
PTPRD-202ENST00000356435 RWDD1Q9H446 243 aaPredicted RBP6.92□□□□□ -1.3
PTPRD-202ENST00000356435 RUSC2Q8N2Y8 1516 aa6.92□□□□□ -1.3
PTPRD-202ENST00000356435 U2AF1L5P0DN76 240 aaPredicted RBP6.92□□□□□ -1.3
PTPRD-202ENST00000356435 U2AF1Q01081 240 aaKnown RBP eCLIP6.92□□□□□ -1.3
PTPRD-202ENST00000356435 CSPP1Q1MSJ5 1256 aa6.92□□□□□ -1.3
PTPRD-202ENST00000356435 NGDNQ8NEJ9 315 aaKnown RBP6.92□□□□□ -1.3
PTPRD-202ENST00000356435 IPO9Q96P70 1041 aaKnown RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms