RNA–Protein interactions for RNA: ENST00000351808.9

IFT88-202, Transcript of intraflagellar transport 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene IFT88, Length 2,856 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-202ENST00000351808 ATP1B4Q9UN42 357 aaPredicted RBP17.38■□□□□ 0.37
IFT88-202ENST00000351808 CLCN1P35523 988 aa17.36■□□□□ 0.37
IFT88-202ENST00000351808 L1TD1Q5T7N2 865 aaKnown RBP17.36■□□□□ 0.37
IFT88-202ENST00000351808 RBM10P98175 930 aaKnown RBP17.36■□□□□ 0.37
IFT88-202ENST00000351808 AQRO60306 1485 aaKnown RBP eCLIP17.35■□□□□ 0.37
IFT88-202ENST00000351808 PNISRQ8TF01 805 aaKnown RBP17.34■□□□□ 0.37
IFT88-202ENST00000351808 ARID4BQ4LE39 1312 aaPredicted RBP17.32■□□□□ 0.36
IFT88-202ENST00000351808 TOP2BQ02880 1626 aa17.32■□□□□ 0.36
IFT88-202ENST00000351808 PLIN1O60240 522 aa17.32■□□□□ 0.36
IFT88-202ENST00000351808 TMC1Q8TDI8 760 aa17.31■□□□□ 0.36
IFT88-202ENST00000351808 L3MBTL2Q969R5 705 aa17.31■□□□□ 0.36
IFT88-202ENST00000351808 POLR3GLQ9BT43 218 aa17.3■□□□□ 0.36
IFT88-202ENST00000351808 XRCC6P12956 609 aaKnown RBP eCLIP17.3■□□□□ 0.36
IFT88-202ENST00000351808 FAM161AQ3B820 660 aa17.28■□□□□ 0.36
IFT88-202ENST00000351808 C8orf34Q49A92 452 aa17.28■□□□□ 0.36
IFT88-202ENST00000351808 CRBNQ96SW2 442 aa17.28■□□□□ 0.36
IFT88-202ENST00000351808 DHX29Q7Z478 1369 aaKnown RBP17.28■□□□□ 0.36
IFT88-202ENST00000351808 PANK2Q9BZ23 570 aa17.27■□□□□ 0.36
IFT88-202ENST00000351808 HFM1A2PYH4 1435 aa17.27■□□□□ 0.36
IFT88-202ENST00000351808 PTPRKQ15262 1439 aa17.27■□□□□ 0.36
IFT88-202ENST00000351808 AAMPQ13685 434 aa17.27■□□□□ 0.36
IFT88-202ENST00000351808 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.26■□□□□ 0.35
IFT88-202ENST00000351808 BICRAQ9NZM4 1560 aa17.26■□□□□ 0.35
IFT88-202ENST00000351808 NBPF8Q3BBV2 869 aa17.25■□□□□ 0.35
IFT88-202ENST00000351808 P3H3Q8IVL6 736 aa17.24■□□□□ 0.35
IFT88-202ENST00000351808 PTPN23Q9H3S7 1636 aa17.24■□□□□ 0.35
IFT88-202ENST00000351808 PRDM4Q9UKN5 801 aa17.23■□□□□ 0.35
IFT88-202ENST00000351808 NAIPQ13075 1403 aa17.22■□□□□ 0.35
IFT88-202ENST00000351808 KIF27Q86VH2 1401 aa17.22■□□□□ 0.35
IFT88-202ENST00000351808 SLKQ9H2G2 1235 aaPredicted RBP17.22■□□□□ 0.35
IFT88-202ENST00000351808 GOLGA6L3A6NEY3 463 aa17.22■□□□□ 0.35
IFT88-202ENST00000351808 PDCL3Q9H2J4 239 aa17.22■□□□□ 0.35
IFT88-202ENST00000351808 RGS3P49796 1198 aa17.21■□□□□ 0.35
IFT88-202ENST00000351808 FGD1P98174 961 aa17.2■□□□□ 0.34
IFT88-202ENST00000351808 CDCA7LQ96GN5 454 aa17.2■□□□□ 0.34
IFT88-202ENST00000351808 FMN1Q68DA7 1419 aa17.2■□□□□ 0.34
IFT88-202ENST00000351808 CALD1Q05682 793 aaKnown RBP17.19■□□□□ 0.34
IFT88-202ENST00000351808 FGD6Q6ZV73 1430 aa17.19■□□□□ 0.34
IFT88-202ENST00000351808 KTN1Q86UP2 1357 aaKnown RBP17.19■□□□□ 0.34
IFT88-202ENST00000351808 ABCA5Q8WWZ7 1642 aa17.18■□□□□ 0.34
IFT88-202ENST00000351808 SPATA31E1Q6ZUB1 1445 aa17.18■□□□□ 0.34
IFT88-202ENST00000351808 GZF1Q9H116 711 aaPredicted RBP17.18■□□□□ 0.34
IFT88-202ENST00000351808 KDM2BQ8NHM5 1336 aa17.18■□□□□ 0.34
IFT88-202ENST00000351808 FOXD1Q16676 465 aa17.18■□□□□ 0.34
IFT88-202ENST00000351808 FSD2A1L4K1 749 aa17.17■□□□□ 0.34
IFT88-202ENST00000351808 BIVM-ERCC5R4GMW8 1640 aa17.16■□□□□ 0.34
IFT88-202ENST00000351808 LRPPRCP42704 1394 aaKnown RBP17.16■□□□□ 0.34
IFT88-202ENST00000351808 CENPJQ9HC77 1338 aaPredicted RBP17.16■□□□□ 0.34
IFT88-202ENST00000351808 CFAP43Q8NDM7 1665 aa17.16■□□□□ 0.34
IFT88-202ENST00000351808 C20orf194Q5TEA3 1177 aa17.16■□□□□ 0.34
IFT88-202ENST00000351808 RRP7BPQ9NSQ0 103 aa17.16■□□□□ 0.34
IFT88-202ENST00000351808 ESPNB1AK53 854 aa17.15■□□□□ 0.34
IFT88-202ENST00000351808 DENND4BO75064 1496 aaPredicted RBP17.14■□□□□ 0.33
IFT88-202ENST00000351808 ERBB4Q15303 1308 aa17.14■□□□□ 0.33
IFT88-202ENST00000351808 CENPQQ7L2Z9 268 aaPredicted RBP17.14■□□□□ 0.33
IFT88-202ENST00000351808 PCF11O94913 1555 aaKnown RBP17.13■□□□□ 0.33
IFT88-202ENST00000351808 TPM2P07951 284 aa17.13■□□□□ 0.33
IFT88-202ENST00000351808 PDE3BQ13370 1112 aa17.13■□□□□ 0.33
IFT88-202ENST00000351808 CHIC2Q9UKJ5 165 aa17.11■□□□□ 0.33
IFT88-202ENST00000351808 MPHOSPH9Q99550 1183 aa17.1■□□□□ 0.33
IFT88-202ENST00000351808 POLR1AO95602 1720 aaPredicted RBP17.1■□□□□ 0.33
IFT88-202ENST00000351808 MYH16Q9H6N6 1097 aa17.09■□□□□ 0.33
IFT88-202ENST00000351808 USP19O94966 1318 aa17.09■□□□□ 0.33
IFT88-202ENST00000351808 BECN1Q14457 450 aa17.09■□□□□ 0.33
IFT88-202ENST00000351808 PDE4CQ08493 712 aa17.08■□□□□ 0.32
IFT88-202ENST00000351808 ANTXR1Q9H6X2 564 aa17.07■□□□□ 0.32
IFT88-202ENST00000351808 MYOM3Q5VTT5 1437 aa17.07■□□□□ 0.32
IFT88-202ENST00000351808 MRE11P49959 708 aa17.06■□□□□ 0.32
IFT88-202ENST00000351808 BRD4O60885 1362 aaPredicted RBP17.06■□□□□ 0.32
IFT88-202ENST00000351808 KIAA1211Q6ZU35 1233 aa17.06■□□□□ 0.32
IFT88-202ENST00000351808 SEC24BO95487 1268 aa17.05■□□□□ 0.32
IFT88-202ENST00000351808 MYBBP1AQ9BQG0 1328 aaKnown RBP17.04■□□□□ 0.32
IFT88-202ENST00000351808 MCM4P33991 863 aa17.03■□□□□ 0.32
IFT88-202ENST00000351808 TRIM44Q96DX7 344 aaPredicted RBP17.03■□□□□ 0.32
IFT88-202ENST00000351808 GRPEL1Q9HAV7 217 aa17.03■□□□□ 0.32
IFT88-202ENST00000351808 FHOD3Q2V2M9 1422 aa17.01■□□□□ 0.31
IFT88-202ENST00000351808 CUX1P39880 1505 aa17.01■□□□□ 0.31
IFT88-202ENST00000351808 BCORL1Q5H9F3 1711 aa17.01■□□□□ 0.31
IFT88-202ENST00000351808 SPRYD3Q8NCJ5 442 aa17.01■□□□□ 0.31
IFT88-202ENST00000351808 MIA2Q96PC5 1412 aa17.01■□□□□ 0.31
IFT88-202ENST00000351808 IGF1RP08069 1367 aa17■□□□□ 0.31
IFT88-202ENST00000351808 KIF15Q9NS87 1388 aa17■□□□□ 0.31
IFT88-202ENST00000351808 TRAK2O60296 914 aa17■□□□□ 0.31
IFT88-202ENST00000351808 MTUS2Q5JR59 1369 aa17■□□□□ 0.31
IFT88-202ENST00000351808 ZNF326Q5BKZ1 582 aaKnown RBP16.99■□□□□ 0.31
IFT88-202ENST00000351808 USP47Q96K76 1375 aa16.99■□□□□ 0.31
IFT88-202ENST00000351808 TEX14Q8IWB6 1497 aa16.98■□□□□ 0.31
IFT88-202ENST00000351808 RALBP1Q15311 655 aa16.98■□□□□ 0.31
IFT88-202ENST00000351808 HECW1Q76N89 1606 aa16.98■□□□□ 0.31
IFT88-202ENST00000351808 ATAD2BQ9ULI0 1458 aa16.98■□□□□ 0.31
IFT88-202ENST00000351808 RIPK4P57078 832 aa16.98■□□□□ 0.31
IFT88-202ENST00000351808 FAM13BQ9NYF5 915 aa16.97■□□□□ 0.31
IFT88-202ENST00000351808 RPRD2Q5VT52 1461 aaKnown RBP16.97■□□□□ 0.31
IFT88-202ENST00000351808 FYCO1Q9BQS8 1478 aa16.97■□□□□ 0.31
IFT88-202ENST00000351808 CARMIL1Q5VZK9 1371 aa16.96■□□□□ 0.31
IFT88-202ENST00000351808 ZHX1Q9UKY1 873 aaPredicted RBP16.96■□□□□ 0.31
IFT88-202ENST00000351808 ANKRD30BQ9BXX2 1392 aa16.95■□□□□ 0.3
IFT88-202ENST00000351808 TBC1D2Q9BYX2 928 aa16.95■□□□□ 0.3
IFT88-202ENST00000351808 CASKIN1Q8WXD9 1431 aa16.95■□□□□ 0.3
IFT88-202ENST00000351808 ARID3AQ99856 593 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms