RNA–Protein interactions for RNA: ENST00000350148.9

SMAD9-201, Transcript of SMAD family member 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMAD9, Length 5,447 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-201ENST00000350148 HNRNPMP52272 730 aaKnown RBP eCLIP16.41■□□□□ 0.222e-6■■■■□ 21.3
SMAD9-201ENST00000350148 TMC1Q8TDI8 760 aa16.41■□□□□ 0.22
SMAD9-201ENST00000350148 WDR97A6NE52 1622 aa16.4■□□□□ 0.22
SMAD9-201ENST00000350148 SUPT6HQ7KZ85 1726 aaKnown RBP16.4■□□□□ 0.22
SMAD9-201ENST00000350148 PLEKHH2Q8IVE3 1493 aa16.39■□□□□ 0.21
SMAD9-201ENST00000350148 PPP1R15AO75807 674 aaPredicted RBP16.39■□□□□ 0.21
SMAD9-201ENST00000350148 HDGFP51858 240 aaKnown RBP16.38■□□□□ 0.21
SMAD9-201ENST00000350148 THOC2Q8NI27 1593 aaKnown RBP16.37■□□□□ 0.21
SMAD9-201ENST00000350148 UACAQ9BZF9 1416 aa16.37■□□□□ 0.21
SMAD9-201ENST00000350148 MRS2Q9HD23 443 aa16.36■□□□□ 0.21
SMAD9-201ENST00000350148 EPRSP07814 1512 aaKnown RBP16.36■□□□□ 0.21
SMAD9-201ENST00000350148 PCF11O94913 1555 aaKnown RBP16.35■□□□□ 0.21
SMAD9-201ENST00000350148 HNRNPUQ00839 825 aaKnown RBP eCLIP16.35■□□□□ 0.21
SMAD9-201ENST00000350148 BCL11AQ9H165 835 aa16.35■□□□□ 0.21
SMAD9-201ENST00000350148 ARID4BQ4LE39 1312 aaPredicted RBP16.34■□□□□ 0.21
SMAD9-201ENST00000350148 DCAF11Q8TEB1 546 aa16.34■□□□□ 0.21
SMAD9-201ENST00000350148 WDR62O43379 1518 aa16.33■□□□□ 0.2
SMAD9-201ENST00000350148 WDR43Q15061 677 aaKnown RBP eCLIP16.32■□□□□ 0.2
SMAD9-201ENST00000350148 TMF1P82094 1093 aa16.31■□□□□ 0.2
SMAD9-201ENST00000350148 ZNF608Q9ULD9 1512 aaPredicted RBP16.31■□□□□ 0.2
SMAD9-201ENST00000350148 FAM9BQ8IZU0 186 aa16.3■□□□□ 0.2
SMAD9-201ENST00000350148 CCER2I3L3R5 266 aa16.29■□□□□ 0.2
SMAD9-201ENST00000350148 CTTNBP2Q8WZ74 1663 aa16.29■□□□□ 0.2
SMAD9-201ENST00000350148 HIRIP3Q9BW71 556 aaPredicted RBP16.29■□□□□ 0.2
SMAD9-201ENST00000350148 KIF21AQ7Z4S6 1674 aa16.29■□□□□ 0.2
SMAD9-201ENST00000350148 ADAMTS12P58397 1594 aa16.29■□□□□ 0.2
SMAD9-201ENST00000350148 KIF3BO15066 747 aa16.28■□□□□ 0.2
SMAD9-201ENST00000350148 STAC3Q96MF2 364 aa16.28■□□□□ 0.2
SMAD9-201ENST00000350148 KNSTRNQ9Y448 316 aa16.28■□□□□ 0.2
SMAD9-201ENST00000350148 ANP32EQ9BTT0 268 aa16.27■□□□□ 0.19
SMAD9-201ENST00000350148 HSPA5P11021 654 aaKnown RBP16.26■□□□□ 0.19
SMAD9-201ENST00000350148 HFM1A2PYH4 1435 aa16.26■□□□□ 0.19
SMAD9-201ENST00000350148 ARHGAP5Q13017 1502 aa16.26■□□□□ 0.19
SMAD9-201ENST00000350148 KIF15Q9NS87 1388 aa16.26■□□□□ 0.19
SMAD9-201ENST00000350148 CCDC144AA2RUR9 1427 aa16.25■□□□□ 0.19
SMAD9-201ENST00000350148 EIF3AQ14152 1382 aaKnown RBP16.25■□□□□ 0.19
SMAD9-201ENST00000350148 CANXP27824 592 aaKnown RBP16.25■□□□□ 0.19
SMAD9-201ENST00000350148 GGT6Q6P531 493 aa16.25■□□□□ 0.19
SMAD9-201ENST00000350148 ANKRD50Q9ULJ7 1429 aa16.25■□□□□ 0.19
SMAD9-201ENST00000350148 ROCK1Q13464 1354 aa16.24■□□□□ 0.19
SMAD9-201ENST00000350148 L3MBTL2Q969R5 705 aa16.24■□□□□ 0.19
SMAD9-201ENST00000350148 UGGT2Q9NYU1 1516 aa16.24■□□□□ 0.19
SMAD9-201ENST00000350148 ROCK2O75116 1388 aaKnown RBP16.23■□□□□ 0.19
SMAD9-201ENST00000350148 FKBP8Q14318 412 aa16.23■□□□□ 0.19
SMAD9-201ENST00000350148 CFAP53Q96M91 514 aa16.22■□□□□ 0.19
SMAD9-201ENST00000350148 FOXD1Q16676 465 aa16.22■□□□□ 0.19
SMAD9-201ENST00000350148 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.22■□□□□ 0.19
SMAD9-201ENST00000350148 ABCA5Q8WWZ7 1642 aa16.21■□□□□ 0.19
SMAD9-201ENST00000350148 CDK13Q14004 1512 aaKnown RBP16.19■□□□□ 0.18
SMAD9-201ENST00000350148 DAPK1P53355 1430 aa16.19■□□□□ 0.18
SMAD9-201ENST00000350148 KIF14Q15058 1648 aa16.19■□□□□ 0.18
SMAD9-201ENST00000350148 POGKQ9P215 609 aa16.18■□□□□ 0.18
SMAD9-201ENST00000350148 WASHC2CQ9Y4E1 1318 aa16.18■□□□□ 0.18
SMAD9-201ENST00000350148 ZNF644Q9H582 1327 aaPredicted RBP16.18■□□□□ 0.18
SMAD9-201ENST00000350148 C9orf84Q5VXU9 1444 aa16.18■□□□□ 0.18
SMAD9-201ENST00000350148 ZBTB47Q9UFB7 747 aaPredicted RBP16.17■□□□□ 0.18
SMAD9-201ENST00000350148 PLPPR3Q6T4P5 718 aa16.16■□□□□ 0.18
SMAD9-201ENST00000350148 CYB5RLQ6IPT4 315 aa16.16■□□□□ 0.18
SMAD9-201ENST00000350148 TRHP20396 242 aaPredicted RBP16.15■□□□□ 0.18
SMAD9-201ENST00000350148 SUPT16HQ9Y5B9 1047 aaKnown RBP16.15■□□□□ 0.18
SMAD9-201ENST00000350148 PTPN23Q9H3S7 1636 aa16.15■□□□□ 0.18
SMAD9-201ENST00000350148 EIF4G3O43432 1585 aaKnown RBP16.15■□□□□ 0.18
SMAD9-201ENST00000350148 PBRM1Q86U86 1689 aa16.14■□□□□ 0.17
SMAD9-201ENST00000350148 RAPGEF6Q8TEU7 1601 aa16.14■□□□□ 0.17
SMAD9-201ENST00000350148 PLB1Q6P1J6 1458 aa16.13■□□□□ 0.17
SMAD9-201ENST00000350148 RALBP1Q15311 655 aa16.12■□□□□ 0.17
SMAD9-201ENST00000350148 AKNAQ7Z591 1439 aa16.11■□□□□ 0.17
SMAD9-201ENST00000350148 KIAA0556O60303 1618 aa16.11■□□□□ 0.17
SMAD9-201ENST00000350148 KTN1Q86UP2 1357 aaKnown RBP16.1■□□□□ 0.17
SMAD9-201ENST00000350148 CCDC141Q6ZP82 1450 aa16.1■□□□□ 0.17
SMAD9-201ENST00000350148 NUP160Q12769 1436 aa16.09■□□□□ 0.17
SMAD9-201ENST00000350148 CFAP43Q8NDM7 1665 aa16.09■□□□□ 0.17
SMAD9-201ENST00000350148 NUDCQ9Y266 331 aa16.08■□□□□ 0.17
SMAD9-201ENST00000350148 CAMSAP2Q08AD1 1489 aa16.08■□□□□ 0.16
SMAD9-201ENST00000350148 KIAA1107Q9UPP5 1409 aa16.08■□□□□ 0.16
SMAD9-201ENST00000350148 NAIPQ13075 1403 aa16.08■□□□□ 0.16
SMAD9-201ENST00000350148 TARBP1Q13395 1621 aaKnown RBP16.08■□□□□ 0.16
SMAD9-201ENST00000350148 PNNQ9H307 717 aaKnown RBP16.08■□□□□ 0.16
SMAD9-201ENST00000350148 MLECQ14165 292 aa16.07■□□□□ 0.16
SMAD9-201ENST00000350148 FAM69CQ0P6D2 419 aa16.06■□□□□ 0.16
SMAD9-201ENST00000350148 VGFO15240 615 aaPredicted RBP16.05■□□□□ 0.16
SMAD9-201ENST00000350148 ITSN2Q9NZM3 1697 aa16.03■□□□□ 0.16
SMAD9-201ENST00000350148 ABCC5O15440 1437 aa16.03■□□□□ 0.16
SMAD9-201ENST00000350148 ARHGEF11O15085 1522 aa16.02■□□□□ 0.16
SMAD9-201ENST00000350148 SAMD9Q5K651 1589 aa16.02■□□□□ 0.16
SMAD9-201ENST00000350148 USP47Q96K76 1375 aa16.01■□□□□ 0.15
SMAD9-201ENST00000350148 NUP153P49790 1475 aaKnown RBP16.01■□□□□ 0.15
SMAD9-201ENST00000350148 HDGFL2Q7Z4V5 671 aaPredicted RBP16.01■□□□□ 0.15
SMAD9-201ENST00000350148 TSHZ2Q9NRE2 1034 aa16■□□□□ 0.15
SMAD9-201ENST00000350148 IRX6P78412 446 aaPredicted RBP16■□□□□ 0.15
SMAD9-201ENST00000350148 SRPK2P78362 688 aaKnown RBP15.99■□□□□ 0.15
SMAD9-201ENST00000350148 NBR1Q14596 966 aa15.99■□□□□ 0.15
SMAD9-201ENST00000350148 C14orf37Q86TY3 774 aa15.99■□□□□ 0.15
SMAD9-201ENST00000350148 EID1Q9Y6B2 187 aa15.99■□□□□ 0.15
SMAD9-201ENST00000350148 TCOF1Q13428 1488 aaKnown RBP15.99■□□□□ 0.15
SMAD9-201ENST00000350148 SCAPERQ9BY12 1400 aa15.98■□□□□ 0.15
SMAD9-201ENST00000350148 AFAP1Q8N556 730 aa15.97■□□□□ 0.15
SMAD9-201ENST00000350148 ATP10BO94823 1461 aa15.97■□□□□ 0.15
SMAD9-201ENST00000350148 SALL2Q9Y467 1007 aaPredicted RBP15.97■□□□□ 0.15
SMAD9-201ENST00000350148 CC2D1BQ5T0F9 858 aaKnown RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms