RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 CFAP43Q8NDM7 1665 aa18.46■□□□□ 0.55
SNCA-202ENST00000345009 ABCA9Q8IUA7 1624 aa18.45■□□□□ 0.54
SNCA-202ENST00000345009 KIF14Q15058 1648 aa18.45■□□□□ 0.54
SNCA-202ENST00000345009 MAP3K4Q9Y6R4 1608 aa18.45■□□□□ 0.54
SNCA-202ENST00000345009 MAGI3Q5TCQ9 1506 aa18.44■□□□□ 0.54
SNCA-202ENST00000345009 TSPOAP1O95153 1857 aa18.44■□□□□ 0.54
SNCA-202ENST00000345009 PHLDB1Q86UU1 1377 aa18.43■□□□□ 0.54
SNCA-202ENST00000345009 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.43■□□□□ 0.54
SNCA-202ENST00000345009 TIAM1Q13009 1591 aa18.42■□□□□ 0.54
SNCA-202ENST00000345009 EFCAB2Q5VUJ9 269 aa18.42■□□□□ 0.54
SNCA-202ENST00000345009 EHBP1L1Q8N3D4 1523 aa18.41■□□□□ 0.54
SNCA-202ENST00000345009 PLCH2O75038 1416 aa18.4■□□□□ 0.54
SNCA-202ENST00000345009 LRRC9Q6ZRR7 1453 aa18.39■□□□□ 0.54
SNCA-202ENST00000345009 SLC4A2P04920 1241 aa18.39■□□□□ 0.53
SNCA-202ENST00000345009 CCNB3Q8WWL7 1395 aa18.39■□□□□ 0.53
SNCA-202ENST00000345009 KANK4Q5T7N3 995 aaPredicted RBP18.38■□□□□ 0.53
SNCA-202ENST00000345009 TTC37Q6PGP7 1564 aa18.36■□□□□ 0.53
SNCA-202ENST00000345009 NEO1Q92859 1461 aa18.36■□□□□ 0.53
SNCA-202ENST00000345009 FANCAO15360 1455 aa18.35■□□□□ 0.53
SNCA-202ENST00000345009 CFDP1Q9UEE9 299 aaPredicted RBP18.35■□□□□ 0.53
SNCA-202ENST00000345009 ARAP3Q8WWN8 1544 aa18.33■□□□□ 0.53
SNCA-202ENST00000345009 SUPT6HQ7KZ85 1726 aaKnown RBP18.32■□□□□ 0.52
SNCA-202ENST00000345009 PPRC1Q5VV67 1664 aaKnown RBP18.32■□□□□ 0.52
SNCA-202ENST00000345009 ARHGAP5Q13017 1502 aa18.32■□□□□ 0.52
SNCA-202ENST00000345009 NCOA2Q15596 1464 aa18.32■□□□□ 0.52
SNCA-202ENST00000345009 MYO5CQ9NQX4 1742 aa18.32■□□□□ 0.52
SNCA-202ENST00000345009 AKNAQ7Z591 1439 aa18.32■□□□□ 0.52
SNCA-202ENST00000345009 C1QBPQ07021 282 aaKnown RBP18.31■□□□□ 0.52
SNCA-202ENST00000345009 CFAP74Q9C0B2 1584 aa18.3■□□□□ 0.52
SNCA-202ENST00000345009 GPATCH8Q9UKJ3 1502 aaKnown RBP18.3■□□□□ 0.52
SNCA-202ENST00000345009 ZNF777Q9ULD5 760 aaPredicted RBP18.3■□□□□ 0.52
SNCA-202ENST00000345009 KDM6BO15054 1643 aa18.27■□□□□ 0.52
SNCA-202ENST00000345009 U3KPZ7 1027 aaPredicted RBP18.27■□□□□ 0.52
SNCA-202ENST00000345009 ADGRL1O94910 1474 aa18.26■□□□□ 0.51
SNCA-202ENST00000345009 SCAPERQ9BY12 1400 aa18.25■□□□□ 0.51
SNCA-202ENST00000345009 DENND4BO75064 1496 aaPredicted RBP18.25■□□□□ 0.51
SNCA-202ENST00000345009 PREX2Q70Z35 1606 aa18.24■□□□□ 0.51
SNCA-202ENST00000345009 PLEKHH2Q8IVE3 1493 aa18.23■□□□□ 0.51
SNCA-202ENST00000345009 RAPGEF3O95398 923 aa18.23■□□□□ 0.51
SNCA-202ENST00000345009 CDC42BPAQ5VT25 1732 aa18.23■□□□□ 0.51
SNCA-202ENST00000345009 CDC42BPBQ9Y5S2 1711 aa18.22■□□□□ 0.51
SNCA-202ENST00000345009 ITSN2Q9NZM3 1697 aa18.22■□□□□ 0.51
SNCA-202ENST00000345009 COL17A1Q9UMD9 1497 aaPredicted RBP18.21■□□□□ 0.51
SNCA-202ENST00000345009 RSPH4AQ5TD94 716 aa18.21■□□□□ 0.51
SNCA-202ENST00000345009 MYOM3Q5VTT5 1437 aa18.21■□□□□ 0.51
SNCA-202ENST00000345009 PPARGC1BQ86YN6 1023 aaKnown RBP18.2■□□□□ 0.5
SNCA-202ENST00000345009 MIA2Q96PC5 1412 aa18.2■□□□□ 0.5
SNCA-202ENST00000345009 KIAA1107Q9UPP5 1409 aa18.2■□□□□ 0.5
SNCA-202ENST00000345009 MYT1LQ9UL68 1186 aa18.19■□□□□ 0.5
SNCA-202ENST00000345009 HNRNPMP52272 730 aaKnown RBP eCLIP18.18■□□□□ 0.5
SNCA-202ENST00000345009 ZNF644Q9H582 1327 aaPredicted RBP18.17■□□□□ 0.5
SNCA-202ENST00000345009 ZNF518AQ6AHZ1 1483 aa18.16■□□□□ 0.5
SNCA-202ENST00000345009 AFAP1Q8N556 730 aa18.16■□□□□ 0.5
SNCA-202ENST00000345009 POGZQ7Z3K3 1410 aa18.15■□□□□ 0.5
SNCA-202ENST00000345009 TSPY4P0CV99 314 aa18.14■□□□□ 0.49
SNCA-202ENST00000345009 TSPY10P0CW01 314 aa18.14■□□□□ 0.49
SNCA-202ENST00000345009 ABCC1P33527 1531 aa18.13■□□□□ 0.49
SNCA-202ENST00000345009 SPAG9O60271 1321 aaKnown RBP18.12■□□□□ 0.49
SNCA-202ENST00000345009 FGD6Q6ZV73 1430 aa18.12■□□□□ 0.49
SNCA-202ENST00000345009 MAGI2Q86UL8 1455 aa18.12■□□□□ 0.49
SNCA-202ENST00000345009 SAMD9LQ8IVG5 1584 aa18.12■□□□□ 0.49
SNCA-202ENST00000345009 CAMSAP2Q08AD1 1489 aa18.11■□□□□ 0.49
SNCA-202ENST00000345009 TRAPPC8Q9Y2L5 1435 aa18.1■□□□□ 0.49
SNCA-202ENST00000345009 FAM50AQ14320 339 aaKnown RBP18.1■□□□□ 0.49
SNCA-202ENST00000345009 FOXD4L1Q9NU39 408 aa18.1■□□□□ 0.49
SNCA-202ENST00000345009 SYCP2Q9BX26 1530 aa18.09■□□□□ 0.49
SNCA-202ENST00000345009 ARHGEF12Q9NZN5 1544 aa18.09■□□□□ 0.49
SNCA-202ENST00000345009 RICTORQ6R327 1708 aa18.08■□□□□ 0.48
SNCA-202ENST00000345009 ZMYM4Q5VZL5 1548 aa18.07■□□□□ 0.48
SNCA-202ENST00000345009 MBD5Q9P267 1494 aa18.07■□□□□ 0.48
SNCA-202ENST00000345009 MLH3Q9UHC1 1453 aa18.06■□□□□ 0.48
SNCA-202ENST00000345009 CCDC141Q6ZP82 1450 aa18.05■□□□□ 0.48
SNCA-202ENST00000345009 PTPN23Q9H3S7 1636 aa18.05■□□□□ 0.48
SNCA-202ENST00000345009 FRMPD1Q5SYB0 1578 aa18.04■□□□□ 0.48
SNCA-202ENST00000345009 KDM5CP41229 1560 aa18.04■□□□□ 0.48
SNCA-202ENST00000345009 ZFYVE16Q7Z3T8 1539 aa18.03■□□□□ 0.48
SNCA-202ENST00000345009 TCOF1Q13428 1488 aaKnown RBP18.03■□□□□ 0.48
SNCA-202ENST00000345009 ARID4BQ4LE39 1312 aaPredicted RBP18.02■□□□□ 0.48
SNCA-202ENST00000345009 RTEL1-TNFRSF6BF6WH68 1400 aa18.02■□□□□ 0.48
SNCA-202ENST00000345009 ARHGEF5Q12774 1597 aa18.02■□□□□ 0.48
SNCA-202ENST00000345009 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.01■□□□□ 0.47
SNCA-202ENST00000345009 ATP10AO60312 1499 aa18.01■□□□□ 0.47
SNCA-202ENST00000345009 HECW2Q9P2P5 1572 aa18■□□□□ 0.47
SNCA-202ENST00000345009 MYCNP04198 464 aaPredicted RBP18■□□□□ 0.47
SNCA-202ENST00000345009 YEATS2Q9ULM3 1422 aa17.99■□□□□ 0.47
SNCA-202ENST00000345009 ATP7AQ04656 1500 aa17.97■□□□□ 0.47
SNCA-202ENST00000345009 ARHGEF40Q8TER5 1519 aa17.97■□□□□ 0.47
SNCA-202ENST00000345009 C9orf84Q5VXU9 1444 aa17.97■□□□□ 0.47
SNCA-202ENST00000345009 ABCC5O15440 1437 aa17.96■□□□□ 0.47
SNCA-202ENST00000345009 DAPK1P53355 1430 aa17.96■□□□□ 0.47
SNCA-202ENST00000345009 RRBP1Q9P2E9 1410 aaKnown RBP17.95■□□□□ 0.46
SNCA-202ENST00000345009 ZBTB22O15209 634 aa17.94■□□□□ 0.46
SNCA-202ENST00000345009 ANKRD30AQ9BXX3 1397 aa17.93■□□□□ 0.46
SNCA-202ENST00000345009 ITGAEP38570 1179 aa17.93■□□□□ 0.46
SNCA-202ENST00000345009 CHIC2Q9UKJ5 165 aa17.93■□□□□ 0.46
SNCA-202ENST00000345009 KIDINS220Q9ULH0 1771 aa17.93■□□□□ 0.46
SNCA-202ENST00000345009 SHANK2Q9UPX8 1470 aa17.93■□□□□ 0.46
SNCA-202ENST00000345009 CAPN15O75808 1086 aa17.92■□□□□ 0.46
SNCA-202ENST00000345009 INO80Q9ULG1 1556 aaPredicted RBP17.91■□□□□ 0.46
SNCA-202ENST00000345009 DNMT1P26358 1616 aaKnown RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms