RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 DEPDC5O75140 1603 aa12.62□□□□□ -0.39
ZNF540-202ENST00000343599 KIF14Q15058 1648 aa12.62□□□□□ -0.39
ZNF540-202ENST00000343599 SETD1BQ9UPS6 1966 aaKnown RBP12.61□□□□□ -0.39
ZNF540-202ENST00000343599 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.61□□□□□ -0.39
ZNF540-202ENST00000343599 C9orf84Q5VXU9 1444 aa12.61□□□□□ -0.39
ZNF540-202ENST00000343599 EIF2AK4Q9P2K8 1649 aaKnown RBP12.6□□□□□ -0.39
ZNF540-202ENST00000343599 PLEKHH2Q8IVE3 1493 aa12.6□□□□□ -0.39
ZNF540-202ENST00000343599 FBLN2P98095 1184 aa12.6□□□□□ -0.39
ZNF540-202ENST00000343599 DENND4BO75064 1496 aaPredicted RBP12.59□□□□□ -0.39
ZNF540-202ENST00000343599 SYNMO15061 1565 aa12.59□□□□□ -0.39
ZNF540-202ENST00000343599 FAM9AQ8IZU1 332 aaPredicted RBP12.58□□□□□ -0.39
ZNF540-202ENST00000343599 RIMS1Q86UR5 1692 aaKnown RBP12.58□□□□□ -0.39
ZNF540-202ENST00000343599 INO80Q9ULG1 1556 aaPredicted RBP12.58□□□□□ -0.4
ZNF540-202ENST00000343599 NUP153P49790 1475 aaKnown RBP12.58□□□□□ -0.4
ZNF540-202ENST00000343599 CAMSAP2Q08AD1 1489 aa12.58□□□□□ -0.4
ZNF540-202ENST00000343599 PPP6R1Q9UPN7 881 aa12.58□□□□□ -0.4
ZNF540-202ENST00000343599 MAST1Q9Y2H9 1570 aa12.57□□□□□ -0.4
ZNF540-202ENST00000343599 PLCH2O75038 1416 aa12.56□□□□□ -0.4
ZNF540-202ENST00000343599 STRCQ7RTU9 1775 aa12.56□□□□□ -0.4
ZNF540-202ENST00000343599 ATP10AO60312 1499 aa12.55□□□□□ -0.4
ZNF540-202ENST00000343599 DIP2CQ9Y2E4 1556 aa12.55□□□□□ -0.4
ZNF540-202ENST00000343599 ABCC1P33527 1531 aa12.55□□□□□ -0.4
ZNF540-202ENST00000343599 FBXO41Q8TF61 875 aa12.55□□□□□ -0.4
ZNF540-202ENST00000343599 ZNF518AQ6AHZ1 1483 aa12.54□□□□□ -0.4
ZNF540-202ENST00000343599 POLR1AO95602 1720 aaPredicted RBP12.53□□□□□ -0.4
ZNF540-202ENST00000343599 C3P01024 1663 aa12.53□□□□□ -0.4
ZNF540-202ENST00000343599 FMN1Q68DA7 1419 aa12.53□□□□□ -0.4
ZNF540-202ENST00000343599 CDC42BPBQ9Y5S2 1711 aa12.53□□□□□ -0.4
ZNF540-202ENST00000343599 KDM5DQ9BY66 1539 aa12.51□□□□□ -0.41
ZNF540-202ENST00000343599 KIAA1107Q9UPP5 1409 aa12.51□□□□□ -0.41
ZNF540-202ENST00000343599 MAP3K1Q13233 1512 aa12.51□□□□□ -0.41
ZNF540-202ENST00000343599 RNF17Q9BXT8 1623 aaKnown RBP12.51□□□□□ -0.41
ZNF540-202ENST00000343599 PTPN23Q9H3S7 1636 aa12.49□□□□□ -0.41
ZNF540-202ENST00000343599 SIGLEC1Q9BZZ2 1709 aa12.49□□□□□ -0.41
ZNF540-202ENST00000343599 CDC42BPAQ5VT25 1732 aa12.48□□□□□ -0.41
ZNF540-202ENST00000343599 CPS1P31327 1500 aa12.48□□□□□ -0.41
ZNF540-202ENST00000343599 ARHGEF5Q12774 1597 aa12.48□□□□□ -0.41
ZNF540-202ENST00000343599 LRRIQ1Q96JM4 1722 aa12.47□□□□□ -0.41
ZNF540-202ENST00000343599 RTEL1-TNFRSF6BF6WH68 1400 aa12.47□□□□□ -0.41
ZNF540-202ENST00000343599 LTBP4Q8N2S1 1624 aa12.47□□□□□ -0.41
ZNF540-202ENST00000343599 FYCO1Q9BQS8 1478 aa12.47□□□□□ -0.41
ZNF540-202ENST00000343599 ABCA6Q8N139 1617 aa12.45□□□□□ -0.42
ZNF540-202ENST00000343599 KIDINS220Q9ULH0 1771 aa12.45□□□□□ -0.42
ZNF540-202ENST00000343599 NCOA2Q15596 1464 aa12.44□□□□□ -0.42
ZNF540-202ENST00000343599 MYO3AQ8NEV4 1616 aa12.44□□□□□ -0.42
ZNF540-202ENST00000343599 PELP1Q8IZL8 1130 aaKnown RBP12.43□□□□□ -0.42
ZNF540-202ENST00000343599 DMRT2Q9Y5R5 561 aa12.41□□□□□ -0.42
ZNF540-202ENST00000343599 TROQ12816 1431 aaPredicted RBP12.41□□□□□ -0.42
ZNF540-202ENST00000343599 MED14O60244 1454 aa12.4□□□□□ -0.42
ZNF540-202ENST00000343599 CASKIN1Q8WXD9 1431 aa12.39□□□□□ -0.43
ZNF540-202ENST00000343599 CLIP1P30622 1438 aa12.39□□□□□ -0.43
ZNF540-202ENST00000343599 YEATS2Q9ULM3 1422 aa12.39□□□□□ -0.43
ZNF540-202ENST00000343599 TCOF1Q13428 1488 aaKnown RBP12.39□□□□□ -0.43
ZNF540-202ENST00000343599 PHF23Q9BUL5 403 aaPredicted RBP12.36□□□□□ -0.43
ZNF540-202ENST00000343599 SAMD9LQ8IVG5 1584 aa12.36□□□□□ -0.43
ZNF540-202ENST00000343599 NCOA1Q15788 1441 aa12.35□□□□□ -0.43
ZNF540-202ENST00000343599 SPATA31D1Q6ZQQ2 1576 aa12.35□□□□□ -0.43
ZNF540-202ENST00000343599 EHBP1L1Q8N3D4 1523 aa12.33□□□□□ -0.44
ZNF540-202ENST00000343599 SUPT6HQ7KZ85 1726 aaKnown RBP12.33□□□□□ -0.44
ZNF540-202ENST00000343599 TRAPPC8Q9Y2L5 1435 aa12.32□□□□□ -0.44
ZNF540-202ENST00000343599 CROCC2H7BZ55 1655 aa12.31□□□□□ -0.44
ZNF540-202ENST00000343599 NLRP1Q9C000 1473 aa12.3□□□□□ -0.44
ZNF540-202ENST00000343599 LMTK2Q8IWU2 1503 aa12.3□□□□□ -0.44
ZNF540-202ENST00000343599 NWD1Q149M9 1564 aa12.29□□□□□ -0.44
ZNF540-202ENST00000343599 CEP170BQ9Y4F5 1589 aaPredicted RBP12.29□□□□□ -0.44
ZNF540-202ENST00000343599 RTN4Q9NQC3 1192 aaKnown RBP12.28□□□□□ -0.44
ZNF540-202ENST00000343599 UHRF1BP1Q6BDS2 1440 aa12.27□□□□□ -0.44
ZNF540-202ENST00000343599 A2ML1A8K2U0 1454 aa12.27□□□□□ -0.44
ZNF540-202ENST00000343599 SHANK2Q9UPX8 1470 aa12.27□□□□□ -0.45
ZNF540-202ENST00000343599 ATP7AQ04656 1500 aa12.27□□□□□ -0.45
ZNF540-202ENST00000343599 LAMC1P11047 1609 aa12.26□□□□□ -0.45
ZNF540-202ENST00000343599 ABCC3O15438 1527 aa12.25□□□□□ -0.45
ZNF540-202ENST00000343599 ARHGAP31Q2M1Z3 1444 aa12.24□□□□□ -0.45
ZNF540-202ENST00000343599 NCOA3Q9Y6Q9 1424 aa12.24□□□□□ -0.45
ZNF540-202ENST00000343599 DIP2AQ14689 1571 aa12.23□□□□□ -0.45
ZNF540-202ENST00000343599 CEP162Q5TB80 1403 aa12.23□□□□□ -0.45
ZNF540-202ENST00000343599 LRRC9Q6ZRR7 1453 aa12.22□□□□□ -0.45
ZNF540-202ENST00000343599 DNMT1P26358 1616 aaKnown RBP12.22□□□□□ -0.45
ZNF540-202ENST00000343599 PZPP20742 1482 aa12.22□□□□□ -0.45
ZNF540-202ENST00000343599 ARHGAP35Q9NRY4 1499 aa12.22□□□□□ -0.45
ZNF540-202ENST00000343599 VWDEQ8N2E2 1590 aa12.22□□□□□ -0.45
ZNF540-202ENST00000343599 SLIT1O75093 1534 aa12.22□□□□□ -0.45
ZNF540-202ENST00000343599 NEURL4Q96JN8 1562 aa12.21□□□□□ -0.45
ZNF540-202ENST00000343599 RSPH4AQ5TD94 716 aa12.2□□□□□ -0.46
ZNF540-202ENST00000343599 ILDR1Q86SU0 546 aaPredicted RBP12.2□□□□□ -0.46
ZNF540-202ENST00000343599 UGGT1Q9NYU2 1555 aa12.2□□□□□ -0.46
ZNF540-202ENST00000343599 CLTCQ00610 1675 aaKnown RBP12.19□□□□□ -0.46
ZNF540-202ENST00000343599 PKD2Q13563 968 aa12.19□□□□□ -0.46
ZNF540-202ENST00000343599 PRDM15P57071 1507 aaPredicted RBP12.19□□□□□ -0.46
ZNF540-202ENST00000343599 MYT1Q01538 1121 aa12.19□□□□□ -0.46
ZNF540-202ENST00000343599 CDK11AQ9UQ88 783 aaPredicted RBP12.19□□□□□ -0.46
ZNF540-202ENST00000343599 PRAG1Q86YV5 1406 aa12.18□□□□□ -0.46
ZNF540-202ENST00000343599 IQGAP1P46940 1657 aa12.18□□□□□ -0.46
ZNF540-202ENST00000343599 PTPRKQ15262 1439 aa12.18□□□□□ -0.46
ZNF540-202ENST00000343599 ARHGAP23Q9P227 1491 aa12.16□□□□□ -0.46
ZNF540-202ENST00000343599 CDK13Q14004 1512 aaKnown RBP12.16□□□□□ -0.46
ZNF540-202ENST00000343599 TIAM1Q13009 1591 aa12.16□□□□□ -0.46
ZNF540-202ENST00000343599 ARHGAP5Q13017 1502 aa12.15□□□□□ -0.46
ZNF540-202ENST00000343599 SCAPERQ9BY12 1400 aa12.14□□□□□ -0.47
ZNF540-202ENST00000343599 EFCAB2Q5VUJ9 269 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms