RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 ISY1Q9ULR0 285 aaKnown RBP4.67□□□□□ -1.66
SYNE1-201ENST00000341594 CHMP4BQ9H444 224 aaKnown RBP4.67□□□□□ -1.66
SYNE1-201ENST00000341594 MEX3CQ5U5Q3 659 aaKnown RBP4.67□□□□□ -1.66
SYNE1-201ENST00000341594 TNIKQ9UKE5 1360 aa4.67□□□□□ -1.66
SYNE1-201ENST00000341594 ANP32CO43423 234 aa4.66□□□□□ -1.66
SYNE1-201ENST00000341594 NOL8Q76FK4 1167 aaKnown RBP4.66□□□□□ -1.66
SYNE1-201ENST00000341594 STK11IPQ8N1F8 1099 aa4.66□□□□□ -1.66
SYNE1-201ENST00000341594 KTN1Q86UP2 1357 aaKnown RBP4.66□□□□□ -1.66
SYNE1-201ENST00000341594 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.66□□□□□ -1.66
SYNE1-201ENST00000341594 RSPH6AQ9H0K4 717 aa4.65□□□□□ -1.66
SYNE1-201ENST00000341594 CCDC144AA2RUR9 1427 aa4.64□□□□□ -1.67
SYNE1-201ENST00000341594 SRRTQ9BXP5 876 aaKnown RBP4.64□□□□□ -1.67
SYNE1-201ENST00000341594 UNC13AQ9UPW8 1703 aa4.64□□□□□ -1.67
SYNE1-201ENST00000341594 CALRP27797 417 aaKnown RBP4.64□□□□□ -1.67
SYNE1-201ENST00000341594 CHMP4CQ96CF2 233 aa4.64□□□□□ -1.67
SYNE1-201ENST00000341594 ANP32BQ92688 251 aaKnown RBP4.64□□□□□ -1.67
SYNE1-201ENST00000341594 CEP164Q9UPV0 1460 aa4.64□□□□□ -1.67
SYNE1-201ENST00000341594 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.64□□□□□ -1.67
SYNE1-201ENST00000341594 MYO10Q9HD67 2058 aa4.63□□□□□ -1.67
SYNE1-201ENST00000341594 ERICH3Q5RHP9 1530 aa4.63□□□□□ -1.67
SYNE1-201ENST00000341594 PHF23Q9BUL5 403 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-201ENST00000341594 MTERF4Q7Z6M4 381 aaKnown RBP4.63□□□□□ -1.67
SYNE1-201ENST00000341594 AKNAQ7Z591 1439 aa4.63□□□□□ -1.67
SYNE1-201ENST00000341594 TAF7LQ5H9L4 462 aa4.63□□□□□ -1.67
SYNE1-201ENST00000341594 RGL3Q3MIN7 710 aa4.63□□□□□ -1.67
SYNE1-201ENST00000341594 CHMP3Q9Y3E7 222 aa4.63□□□□□ -1.67
SYNE1-201ENST00000341594 MYH6P13533 1939 aa4.63□□□□□ -1.67
SYNE1-201ENST00000341594 SLKQ9H2G2 1235 aaPredicted RBP4.62□□□□□ -1.67
SYNE1-201ENST00000341594 MAP7D2Q96T17 732 aa4.62□□□□□ -1.67
SYNE1-201ENST00000341594 PPM1GO15355 546 aaPredicted RBP4.62□□□□□ -1.67
SYNE1-201ENST00000341594 PAXIP1Q6ZW49 1069 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-201ENST00000341594 VGLL3A8MV65 326 aa4.61□□□□□ -1.67
SYNE1-201ENST00000341594 ZNF777Q9ULD5 760 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-201ENST00000341594 FOSBP53539 338 aa4.61□□□□□ -1.67
SYNE1-201ENST00000341594 PEG3Q9GZU2 1588 aa4.61□□□□□ -1.67
SYNE1-201ENST00000341594 PKNOX2Q96KN3 472 aa4.61□□□□□ -1.67
SYNE1-201ENST00000341594 CHGAP10645 457 aaKnown RBP4.61□□□□□ -1.67
SYNE1-201ENST00000341594 FAM13BQ9NYF5 915 aa4.6□□□□□ -1.67
SYNE1-201ENST00000341594 MS4A1P11836 297 aa4.6□□□□□ -1.67
SYNE1-201ENST00000341594 ZMYM4Q5VZL5 1548 aa4.6□□□□□ -1.67
SYNE1-201ENST00000341594 NOP58Q9Y2X3 529 aaKnown RBP4.6□□□□□ -1.67
SYNE1-201ENST00000341594 ABCA5Q8WWZ7 1642 aa4.6□□□□□ -1.67
SYNE1-201ENST00000341594 CC2D1BQ5T0F9 858 aaKnown RBP4.6□□□□□ -1.67
SYNE1-201ENST00000341594 A0A0G2JS52 829 aa4.6□□□□□ -1.67
SYNE1-201ENST00000341594 APPP05067 770 aa4.6□□□□□ -1.67
SYNE1-201ENST00000341594 DDRGK1Q96HY6 314 aa4.6□□□□□ -1.67
SYNE1-201ENST00000341594 MYH15Q9Y2K3 1946 aa4.6□□□□□ -1.67
SYNE1-201ENST00000341594 CUX2O14529 1486 aa4.6□□□□□ -1.67
SYNE1-201ENST00000341594 CCDC184Q52MB2 194 aa4.6□□□□□ -1.67
SYNE1-201ENST00000341594 SMARCA2P51531 1590 aa4.6□□□□□ -1.67
SYNE1-201ENST00000341594 FRAT1Q92837 279 aaPredicted RBP4.6□□□□□ -1.67
SYNE1-201ENST00000341594 TSPOAP1O95153 1857 aa4.59□□□□□ -1.67
SYNE1-201ENST00000341594 ZHX1Q9UKY1 873 aaPredicted RBP4.59□□□□□ -1.67
SYNE1-201ENST00000341594 HSP90AA1P07900 732 aaKnown RBP4.59□□□□□ -1.67
SYNE1-201ENST00000341594 INSRP06213 1382 aa4.59□□□□□ -1.67
SYNE1-201ENST00000341594 LARP6Q9BRS8 491 aaKnown RBP4.59□□□□□ -1.67
SYNE1-201ENST00000341594 WWC1Q8IX03 1113 aa4.59□□□□□ -1.67
SYNE1-201ENST00000341594 CANXP27824 592 aaKnown RBP4.59□□□□□ -1.67
SYNE1-201ENST00000341594 TAF3Q5VWG9 929 aa4.59□□□□□ -1.67
SYNE1-201ENST00000341594 DNTTIP2Q5QJE6 756 aaKnown RBP4.59□□□□□ -1.68
SYNE1-201ENST00000341594 TMX1Q9H3N1 280 aa4.58□□□□□ -1.68
SYNE1-201ENST00000341594 PATL2C9JE40 543 aaKnown RBP4.58□□□□□ -1.68
SYNE1-201ENST00000341594 SOX12O15370 315 aa4.58□□□□□ -1.68
SYNE1-201ENST00000341594 TNNT1P13805 278 aa4.58□□□□□ -1.68
SYNE1-201ENST00000341594 TERF1P54274 439 aa4.58□□□□□ -1.68
SYNE1-201ENST00000341594 TSC1Q92574 1164 aa4.58□□□□□ -1.68
SYNE1-201ENST00000341594 JARID2Q92833 1246 aaPredicted RBP4.58□□□□□ -1.68
SYNE1-201ENST00000341594 ZMYND15Q9H091 742 aa4.58□□□□□ -1.68
SYNE1-201ENST00000341594 MYH8P13535 1937 aa4.58□□□□□ -1.68
SYNE1-201ENST00000341594 RRP7BPQ9NSQ0 103 aa4.57□□□□□ -1.68
SYNE1-201ENST00000341594 CREBRFQ8IUR6 639 aa4.57□□□□□ -1.68
SYNE1-201ENST00000341594 CFAP44Q96MT7 982 aa4.57□□□□□ -1.68
SYNE1-201ENST00000341594 DDX54Q8TDD1 881 aaKnown RBP4.57□□□□□ -1.68
SYNE1-201ENST00000341594 PHLDB1Q86UU1 1377 aa4.57□□□□□ -1.68
SYNE1-201ENST00000341594 CCDC18Q5T9S5 1454 aa4.56□□□□□ -1.68
SYNE1-201ENST00000341594 EXOC6Q8TAG9 804 aa4.56□□□□□ -1.68
SYNE1-201ENST00000341594 PTMAP06454 111 aaKnown RBP4.56□□□□□ -1.68
SYNE1-201ENST00000341594 PDIA4P13667 645 aaKnown RBP4.56□□□□□ -1.68
SYNE1-201ENST00000341594 BRD2P25440 801 aaKnown RBP4.56□□□□□ -1.68
SYNE1-201ENST00000341594 RRP7AQ9Y3A4 280 aaKnown RBP4.56□□□□□ -1.68
SYNE1-201ENST00000341594 SPDYE4A6NLX3 237 aa4.56□□□□□ -1.68
SYNE1-201ENST00000341594 NUTM2DQ5VT03 806 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-201ENST00000341594 WASHC2AQ641Q2 1341 aa4.56□□□□□ -1.68
SYNE1-201ENST00000341594 WASHC2CQ9Y4E1 1318 aa4.56□□□□□ -1.68
SYNE1-201ENST00000341594 RSF1Q96T23 1441 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-201ENST00000341594 NAP1L2Q9ULW6 460 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-201ENST00000341594 MYH13Q9UKX3 1938 aa4.55□□□□□ -1.68
SYNE1-201ENST00000341594 STAC3Q96MF2 364 aa4.55□□□□□ -1.68
SYNE1-201ENST00000341594 FAM170AA1A519 330 aa4.55□□□□□ -1.68
SYNE1-201ENST00000341594 PPP4R2Q9NY27 417 aa4.55□□□□□ -1.68
SYNE1-201ENST00000341594 ZMYM3Q14202 1370 aa4.55□□□□□ -1.68
SYNE1-201ENST00000341594 MRS2Q9HD23 443 aa4.55□□□□□ -1.68
SYNE1-201ENST00000341594 BIVM-ERCC5R4GMW8 1640 aa4.55□□□□□ -1.68
SYNE1-201ENST00000341594 FAM193AP78312 1265 aa4.54□□□□□ -1.68
SYNE1-201ENST00000341594 ELL2O00472 640 aaPredicted RBP4.54□□□□□ -1.68
SYNE1-201ENST00000341594 SF3A3Q12874 501 aaKnown RBP eCLIP4.54□□□□□ -1.68
SYNE1-201ENST00000341594 TNNT3P45378 269 aaPredicted RBP4.54□□□□□ -1.68
SYNE1-201ENST00000341594 CCDC146Q8IYE0 955 aa4.54□□□□□ -1.68
SYNE1-201ENST00000341594 TOP2AP11388 1531 aaKnown RBP4.54□□□□□ -1.68
SYNE1-201ENST00000341594 PDE3BQ13370 1112 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms