RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 ILDR1Q86SU0 546 aaPredicted RBP24.73■■□□□ 1.55
VAPA-201ENST00000340541 BCORL1Q5H9F3 1711 aa24.72■■□□□ 1.55
VAPA-201ENST00000340541 MAGI2Q86UL8 1455 aa24.71■■□□□ 1.55
VAPA-201ENST00000340541 ARHGEF40Q8TER5 1519 aa24.71■■□□□ 1.55
VAPA-201ENST00000340541 ZMYM4Q5VZL5 1548 aa24.7■■□□□ 1.54
VAPA-201ENST00000340541 EFCAB2Q5VUJ9 269 aa24.67■■□□□ 1.54
VAPA-201ENST00000340541 POGZQ7Z3K3 1410 aa24.66■■□□□ 1.54
VAPA-201ENST00000340541 SCAPERQ9BY12 1400 aa24.65■■□□□ 1.54
VAPA-201ENST00000340541 MYO5CQ9NQX4 1742 aa24.64■■□□□ 1.54
VAPA-201ENST00000340541 ZFYVE16Q7Z3T8 1539 aa24.62■■□□□ 1.53
VAPA-201ENST00000340541 MADDQ8WXG6 1647 aa24.62■■□□□ 1.53
VAPA-201ENST00000340541 VPS8Q8N3P4 1428 aa24.6■■□□□ 1.53
VAPA-201ENST00000340541 YEATS2Q9ULM3 1422 aa24.6■■□□□ 1.53
VAPA-201ENST00000340541 CDC42BPBQ9Y5S2 1711 aa24.55■■□□□ 1.52
VAPA-201ENST00000340541 PREX2Q70Z35 1606 aa24.54■■□□□ 1.52
VAPA-201ENST00000340541 ATP10AO60312 1499 aa24.54■■□□□ 1.52
VAPA-201ENST00000340541 RIMS1Q86UR5 1692 aaKnown RBP24.53■■□□□ 1.52
VAPA-201ENST00000340541 CDC42BPAQ5VT25 1732 aa24.52■■□□□ 1.52
VAPA-201ENST00000340541 ARHGAP5Q13017 1502 aa24.52■■□□□ 1.52
VAPA-201ENST00000340541 ZNF518AQ6AHZ1 1483 aa24.51■■□□□ 1.51
VAPA-201ENST00000340541 MTUS2Q5JR59 1369 aa24.5■■□□□ 1.51
VAPA-201ENST00000340541 LMTK3Q96Q04 1460 aa24.5■■□□□ 1.51
VAPA-201ENST00000340541 EHBP1L1Q8N3D4 1523 aa24.5■■□□□ 1.51
VAPA-201ENST00000340541 TIAM1Q13009 1591 aa24.49■■□□□ 1.51
VAPA-201ENST00000340541 C9orf84Q5VXU9 1444 aa24.48■■□□□ 1.51
VAPA-201ENST00000340541 SIGLEC1Q9BZZ2 1709 aa24.47■■□□□ 1.51
VAPA-201ENST00000340541 GPATCH8Q9UKJ3 1502 aaKnown RBP24.47■■□□□ 1.51
VAPA-201ENST00000340541 AFAP1Q8N556 730 aa24.46■■□□□ 1.51
VAPA-201ENST00000340541 MLECQ14165 292 aa24.45■■□□□ 1.5
VAPA-201ENST00000340541 KDM5CP41229 1560 aa24.44■■□□□ 1.5
VAPA-201ENST00000340541 ARHGEF12Q9NZN5 1544 aa24.43■■□□□ 1.5
VAPA-201ENST00000340541 FBXO41Q8TF61 875 aa24.42■■□□□ 1.5
VAPA-201ENST00000340541 ABCC1P33527 1531 aa24.41■■□□□ 1.5
VAPA-201ENST00000340541 MAP3K1Q13233 1512 aa24.41■■□□□ 1.5
VAPA-201ENST00000340541 MLH3Q9UHC1 1453 aa24.4■■□□□ 1.5
VAPA-201ENST00000340541 FER1L4A9Z1Z3 1794 aa24.4■■□□□ 1.5
VAPA-201ENST00000340541 CCNB3Q8WWL7 1395 aa24.39■■□□□ 1.49
VAPA-201ENST00000340541 SAMD9LQ8IVG5 1584 aa24.38■■□□□ 1.49
VAPA-201ENST00000340541 MYT1LQ9UL68 1186 aa24.38■■□□□ 1.49
VAPA-201ENST00000340541 LRRC9Q6ZRR7 1453 aa24.38■■□□□ 1.49
VAPA-201ENST00000340541 REREQ9P2R6 1566 aa24.37■■□□□ 1.49
VAPA-201ENST00000340541 ITSN2Q9NZM3 1697 aa24.37■■□□□ 1.49
VAPA-201ENST00000340541 SUPT6HQ7KZ85 1726 aaKnown RBP24.36■■□□□ 1.49
VAPA-201ENST00000340541 NCOA2Q15596 1464 aa24.35■■□□□ 1.49
VAPA-201ENST00000340541 PLPPR3Q6T4P5 718 aa24.35■■□□□ 1.49
VAPA-201ENST00000340541 HSPA2P54652 639 aa24.34■■□□□ 1.49
VAPA-201ENST00000340541 TRAPPC8Q9Y2L5 1435 aa24.34■■□□□ 1.49
VAPA-201ENST00000340541 KANK4Q5T7N3 995 aaPredicted RBP24.33■■□□□ 1.49
VAPA-201ENST00000340541 CFDP1Q9UEE9 299 aaPredicted RBP24.32■■□□□ 1.48
VAPA-201ENST00000340541 DIP2CQ9Y2E4 1556 aa24.32■■□□□ 1.48
VAPA-201ENST00000340541 ZNF777Q9ULD5 760 aaPredicted RBP24.3■■□□□ 1.48
VAPA-201ENST00000340541 AGLP35573 1532 aa24.3■■□□□ 1.48
VAPA-201ENST00000340541 SYCP2Q9BX26 1530 aa24.3■■□□□ 1.48
VAPA-201ENST00000340541 KIAA1107Q9UPP5 1409 aa24.27■■□□□ 1.48
VAPA-201ENST00000340541 SETD1BQ9UPS6 1966 aaKnown RBP24.27■■□□□ 1.48
VAPA-201ENST00000340541 CEBPAP49715 358 aaPredicted RBP24.27■■□□□ 1.48
VAPA-201ENST00000340541 PLEKHH2Q8IVE3 1493 aa24.26■■□□□ 1.47
VAPA-201ENST00000340541 ABCA6Q8N139 1617 aa24.25■■□□□ 1.47
VAPA-201ENST00000340541 PREX1Q8TCU6 1659 aa24.25■■□□□ 1.47
VAPA-201ENST00000340541 ESF1Q9H501 851 aaKnown RBP24.24■■□□□ 1.47
VAPA-201ENST00000340541 ZNF644Q9H582 1327 aaPredicted RBP24.24■■□□□ 1.47
VAPA-201ENST00000340541 HNRNPMP52272 730 aaKnown RBP eCLIP24.23■■□□□ 1.477e-9■■■■□ 24.6
VAPA-201ENST00000340541 KIDINS220Q9ULH0 1771 aa24.22■■□□□ 1.47
VAPA-201ENST00000340541 DMRT2Q9Y5R5 561 aa24.22■■□□□ 1.47
VAPA-201ENST00000340541 MBD5Q9P267 1494 aa24.2■■□□□ 1.47
VAPA-201ENST00000340541 UHRF1BP1Q6BDS2 1440 aa24.19■■□□□ 1.46
VAPA-201ENST00000340541 CNTLNQ9NXG0 1405 aa24.18■■□□□ 1.46
VAPA-201ENST00000340541 SPAG9O60271 1321 aaKnown RBP24.18■■□□□ 1.46
VAPA-201ENST00000340541 APLP2Q06481 763 aa24.18■■□□□ 1.46
VAPA-201ENST00000340541 CAMSAP2Q08AD1 1489 aa24.17■■□□□ 1.46
VAPA-201ENST00000340541 INO80Q9ULG1 1556 aaPredicted RBP24.16■■□□□ 1.46
VAPA-201ENST00000340541 CERKQ8TCT0 537 aa24.15■■□□□ 1.46
VAPA-201ENST00000340541 MYOM3Q5VTT5 1437 aa24.14■■□□□ 1.45
VAPA-201ENST00000340541 C3P01024 1663 aa24.13■■□□□ 1.45
VAPA-201ENST00000340541 ATP7AQ04656 1500 aa24.13■■□□□ 1.45
VAPA-201ENST00000340541 MIA2Q96PC5 1412 aa24.1■■□□□ 1.45
VAPA-201ENST00000340541 ARHGEF5Q12774 1597 aa24.08■■□□□ 1.45
VAPA-201ENST00000340541 PPP6R1Q9UPN7 881 aa24.08■■□□□ 1.45
VAPA-201ENST00000340541 STRCQ7RTU9 1775 aa24.08■■□□□ 1.44
VAPA-201ENST00000340541 CCDC141Q6ZP82 1450 aa24.07■■□□□ 1.44
VAPA-201ENST00000340541 NPATQ14207 1427 aa24.07■■□□□ 1.44
VAPA-201ENST00000340541 MROH2AA6NES4 1674 aa24.05■■□□□ 1.44
VAPA-201ENST00000340541 ZMYM3Q14202 1370 aa24.05■■□□□ 1.44
VAPA-201ENST00000340541 PTPRTO14522 1441 aa24.05■■□□□ 1.44
VAPA-201ENST00000340541 A2MP01023 1474 aa24.05■■□□□ 1.44
VAPA-201ENST00000340541 RTEL1-TNFRSF6BF6WH68 1400 aa24.04■■□□□ 1.44
VAPA-201ENST00000340541 PLXNC1O60486 1568 aa24.03■■□□□ 1.44
VAPA-201ENST00000340541 RSPH4AQ5TD94 716 aa24.03■■□□□ 1.44
VAPA-201ENST00000340541 ADGBQ8N7X0 1667 aa24■■□□□ 1.43
VAPA-201ENST00000340541 PTPN23Q9H3S7 1636 aa23.99■■□□□ 1.43
VAPA-201ENST00000340541 FGD6Q6ZV73 1430 aa23.99■■□□□ 1.43
VAPA-201ENST00000340541 TCOF1Q13428 1488 aaKnown RBP23.97■■□□□ 1.43
VAPA-201ENST00000340541 GGT6Q6P531 493 aa23.97■■□□□ 1.43
VAPA-201ENST00000340541 MAST1Q9Y2H9 1570 aa23.96■■□□□ 1.43
VAPA-201ENST00000340541 NCOA1Q15788 1441 aa23.94■■□□□ 1.42
VAPA-201ENST00000340541 DHX29Q7Z478 1369 aaKnown RBP23.94■■□□□ 1.42
VAPA-201ENST00000340541 CLTCQ00610 1675 aaKnown RBP23.92■■□□□ 1.42
VAPA-201ENST00000340541 TSPY4P0CV99 314 aa23.91■■□□□ 1.42
VAPA-201ENST00000340541 TSPY10P0CW01 314 aa23.91■■□□□ 1.42
VAPA-201ENST00000340541 PTPRKQ15262 1439 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms