RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 GOLGA6L3A6NEY3 463 aa16.22■□□□□ 0.19
USP47-202ENST00000339865 KIAA1211Q6ZU35 1233 aa16.21■□□□□ 0.19
USP47-202ENST00000339865 RBM19Q9Y4C8 960 aaKnown RBP16.21■□□□□ 0.18
USP47-202ENST00000339865 HSP90B1P14625 803 aaKnown RBP16.19■□□□□ 0.18
USP47-202ENST00000339865 TPM3P06753 285 aa16.19■□□□□ 0.18
USP47-202ENST00000339865 ZNF330Q9Y3S2 320 aaPredicted RBP16.19■□□□□ 0.18
USP47-202ENST00000339865 TIMELESSQ9UNS1 1208 aa16.19■□□□□ 0.18
USP47-202ENST00000339865 MSH5O43196 834 aa16.18■□□□□ 0.18
USP47-202ENST00000339865 CSRNP3Q8WYN3 585 aa16.18■□□□□ 0.18
USP47-202ENST00000339865 RSPH6AQ9H0K4 717 aa16.16■□□□□ 0.18
USP47-202ENST00000339865 HTATSF1O43719 755 aaKnown RBP16.16■□□□□ 0.18
USP47-202ENST00000339865 MS4A1P11836 297 aa16.16■□□□□ 0.18
USP47-202ENST00000339865 APBB1O00213 710 aa16.16■□□□□ 0.18
USP47-202ENST00000339865 PES1O00541 588 aaKnown RBP16.15■□□□□ 0.18
USP47-202ENST00000339865 SOX12O15370 315 aa16.14■□□□□ 0.17
USP47-202ENST00000339865 CALD1Q05682 793 aaKnown RBP16.14■□□□□ 0.17
USP47-202ENST00000339865 GPS2Q13227 327 aa16.13■□□□□ 0.17
USP47-202ENST00000339865 RGL3Q3MIN7 710 aa16.12■□□□□ 0.17
USP47-202ENST00000339865 RASSF8Q8NHQ8 419 aa16.12■□□□□ 0.17
USP47-202ENST00000339865 CCDC34Q96HJ3 373 aa16.12■□□□□ 0.17
USP47-202ENST00000339865 CFAP44Q96MT7 982 aa16.11■□□□□ 0.17
USP47-202ENST00000339865 U2SURPO15042 1029 aaKnown RBP16.11■□□□□ 0.17
USP47-202ENST00000339865 WDR70Q9NW82 654 aa16.11■□□□□ 0.17
USP47-202ENST00000339865 PHF14O94880 888 aa16.1■□□□□ 0.17
USP47-202ENST00000339865 CWC22Q9HCG8 908 aaKnown RBP16.1■□□□□ 0.17
USP47-202ENST00000339865 NUDCQ9Y266 331 aa16.09■□□□□ 0.17
USP47-202ENST00000339865 MAP7D2Q96T17 732 aa16.09■□□□□ 0.17
USP47-202ENST00000339865 TEX35Q5T0J7 233 aa16.09■□□□□ 0.17
USP47-202ENST00000339865 TSPY4P0CV99 314 aa16.08■□□□□ 0.17
USP47-202ENST00000339865 TSPY10P0CW01 314 aa16.08■□□□□ 0.17
USP47-202ENST00000339865 TSR1Q2NL82 804 aaKnown RBP16.08■□□□□ 0.17
USP47-202ENST00000339865 VPS53Q5VIR6 699 aa16.08■□□□□ 0.16
USP47-202ENST00000339865 CCDC70Q6NSX1 233 aa16.08■□□□□ 0.16
USP47-202ENST00000339865 ZNF592Q92610 1267 aa16.07■□□□□ 0.16
USP47-202ENST00000339865 CC2D1BQ5T0F9 858 aaKnown RBP16.07■□□□□ 0.16
USP47-202ENST00000339865 MEX3CQ5U5Q3 659 aaKnown RBP16.07■□□□□ 0.16
USP47-202ENST00000339865 KCNH8Q96L42 1107 aa16.06■□□□□ 0.16
USP47-202ENST00000339865 MLECQ14165 292 aa16.06■□□□□ 0.16
USP47-202ENST00000339865 CSPP1Q1MSJ5 1256 aa16.06■□□□□ 0.16
USP47-202ENST00000339865 TPD52L1Q16890 204 aaPredicted RBP16.05■□□□□ 0.16
USP47-202ENST00000339865 FOXD4L1Q9NU39 408 aa16.05■□□□□ 0.16
USP47-202ENST00000339865 FAM13BQ9NYF5 915 aa16.04■□□□□ 0.16
USP47-202ENST00000339865 CDCA8Q53HL2 280 aa16.04■□□□□ 0.16
USP47-202ENST00000339865 NOM1Q5C9Z4 860 aaKnown RBP16.04■□□□□ 0.16
USP47-202ENST00000339865 FOXD4L5Q5VV16 416 aaPredicted RBP16.03■□□□□ 0.16
USP47-202ENST00000339865 FOXD4L4Q8WXT5 416 aaPredicted RBP16.03■□□□□ 0.16
USP47-202ENST00000339865 GOLGA6L19H0YKK7 550 aa16.01■□□□□ 0.15
USP47-202ENST00000339865 NOL8Q76FK4 1167 aaKnown RBP16.01■□□□□ 0.15
USP47-202ENST00000339865 PLCD4Q9BRC7 762 aa15.99■□□□□ 0.15
USP47-202ENST00000339865 RRP7BPQ9NSQ0 103 aa15.99■□□□□ 0.15
USP47-202ENST00000339865 MFAP1P55081 439 aaKnown RBP15.99■□□□□ 0.15
USP47-202ENST00000339865 TRIM6-TRIM34B2RNG4 842 aa15.99■□□□□ 0.15
USP47-202ENST00000339865 SF3A1Q15459 793 aaKnown RBP15.99■□□□□ 0.15
USP47-202ENST00000339865 FOXD4L6Q3SYB3 417 aaPredicted RBP15.96■□□□□ 0.15
USP47-202ENST00000339865 FOXD4L3Q6VB84 417 aaPredicted RBP15.96■□□□□ 0.15
USP47-202ENST00000339865 CARD11Q9BXL7 1154 aa15.96■□□□□ 0.15
USP47-202ENST00000339865 HMMRO75330 724 aa15.95■□□□□ 0.14
USP47-202ENST00000339865 BCL11BQ9C0K0 894 aaPredicted RBP15.95■□□□□ 0.14
USP47-202ENST00000339865 TPM1P09493 284 aa15.95■□□□□ 0.14
USP47-202ENST00000339865 RDXP35241 583 aaKnown RBP15.95■□□□□ 0.14
USP47-202ENST00000339865 CCDC191Q8NCU4 936 aa15.95■□□□□ 0.14
USP47-202ENST00000339865 RUFY1Q96T51 708 aa15.95■□□□□ 0.14
USP47-202ENST00000339865 PPP1R1BQ9UD71 204 aaPredicted RBP15.94■□□□□ 0.14
USP47-202ENST00000339865 MARCH6O60337 910 aa15.94■□□□□ 0.14
USP47-202ENST00000339865 H0YHG0 523 aa15.93■□□□□ 0.14
USP47-202ENST00000339865 IPO9Q96P70 1041 aaKnown RBP15.93■□□□□ 0.14
USP47-202ENST00000339865 BECN2A8MW95 431 aa15.92■□□□□ 0.14
USP47-202ENST00000339865 PAK3O75914 559 aaPredicted RBP15.92■□□□□ 0.14
USP47-202ENST00000339865 DCAF1Q9Y4B6 1507 aa15.92■□□□□ 0.14
USP47-202ENST00000339865 HOMER1Q86YM7 354 aa15.92■□□□□ 0.14
USP47-202ENST00000339865 GORABQ5T7V8 394 aa15.92■□□□□ 0.14
USP47-202ENST00000339865 MTUS2Q5JR59 1369 aa15.91■□□□□ 0.14
USP47-202ENST00000339865 CSB-PGBD3P0DP91 1061 aa15.91■□□□□ 0.14
USP47-202ENST00000339865 TPM2P07951 284 aa15.91■□□□□ 0.14
USP47-202ENST00000339865 HSP90AB3PQ58FF7 597 aa15.91■□□□□ 0.14
USP47-202ENST00000339865 RAD21O60216 631 aa15.91■□□□□ 0.14
USP47-202ENST00000339865 KIF16BQ96L93 1317 aa15.91■□□□□ 0.14
USP47-202ENST00000339865 AK7Q96M32 723 aa15.91■□□□□ 0.14
USP47-202ENST00000339865 PODXL2Q9NZ53 605 aa15.91■□□□□ 0.14
USP47-202ENST00000339865 POGKQ9P215 609 aa15.91■□□□□ 0.14
USP47-202ENST00000339865 GPATCH3Q96I76 525 aa15.9■□□□□ 0.14
USP47-202ENST00000339865 ITPRIPQ8IWB1 547 aa15.9■□□□□ 0.14
USP47-202ENST00000339865 CHMP3Q9Y3E7 222 aa15.9■□□□□ 0.14
USP47-202ENST00000339865 RTF1Q92541 710 aaKnown RBP15.9■□□□□ 0.14
USP47-202ENST00000339865 PCMTD1Q96MG8 357 aaPredicted RBP15.9■□□□□ 0.14
USP47-202ENST00000339865 PPM1FP49593 454 aaPredicted RBP15.89■□□□□ 0.13
USP47-202ENST00000339865 STK11IPQ8N1F8 1099 aa15.89■□□□□ 0.13
USP47-202ENST00000339865 H3BQV1 296 aa15.89■□□□□ 0.13
USP47-202ENST00000339865 IFFO2Q5TF58 517 aa15.89■□□□□ 0.13
USP47-202ENST00000339865 DDX11L8A8MPP1 907 aa15.89■□□□□ 0.13
USP47-202ENST00000339865 IPO7O95373 1038 aaKnown RBP15.87■□□□□ 0.13
USP47-202ENST00000339865 DDX49Q9Y6V7 483 aaKnown RBP15.87■□□□□ 0.13
USP47-202ENST00000339865 KAT6BQ8WYB5 2073 aa15.87■□□□□ 0.13
USP47-202ENST00000339865 IPO8O15397 1037 aaKnown RBP15.87■□□□□ 0.13
USP47-202ENST00000339865 TCERG1O14776 1098 aaKnown RBP15.87■□□□□ 0.13
USP47-202ENST00000339865 ST18O60284 1047 aa15.86■□□□□ 0.13
USP47-202ENST00000339865 SAMD1Q6SPF0 538 aaPredicted RBP15.86■□□□□ 0.13
USP47-202ENST00000339865 CTDP1Q9Y5B0 961 aaPredicted RBP15.86■□□□□ 0.13
USP47-202ENST00000339865 PKNOX2Q96KN3 472 aa15.85■□□□□ 0.13
USP47-202ENST00000339865 GSE1Q14687 1217 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms