RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 ADAMTSL3P82987 1691 aa16.08■□□□□ 0.17
RTN3-201ENST00000338850 APLP2Q06481 763 aa16.08■□□□□ 0.16
RTN3-201ENST00000338850 CDK11AQ9UQ88 783 aaPredicted RBP16.08■□□□□ 0.16
RTN3-201ENST00000338850 TROQ12816 1431 aaPredicted RBP16.07■□□□□ 0.16
RTN3-201ENST00000338850 ZMYM4Q5VZL5 1548 aa16.07■□□□□ 0.16
RTN3-201ENST00000338850 PTPRMP28827 1452 aa16.06■□□□□ 0.16
RTN3-201ENST00000338850 SCAPERQ9BY12 1400 aa16.05■□□□□ 0.16
RTN3-201ENST00000338850 ARID4BQ4LE39 1312 aaPredicted RBP16.05■□□□□ 0.16
RTN3-201ENST00000338850 BCORL1Q5H9F3 1711 aa16.05■□□□□ 0.16
RTN3-201ENST00000338850 KIF14Q15058 1648 aa16.05■□□□□ 0.16
RTN3-201ENST00000338850 POGZQ7Z3K3 1410 aa16.04■□□□□ 0.16
RTN3-201ENST00000338850 MAGI2Q86UL8 1455 aa16.03■□□□□ 0.16
RTN3-201ENST00000338850 CASKIN1Q8WXD9 1431 aa16.03■□□□□ 0.16
RTN3-201ENST00000338850 YEATS2Q9ULM3 1422 aa16.03■□□□□ 0.16
RTN3-201ENST00000338850 EFCAB2Q5VUJ9 269 aa16.03■□□□□ 0.16
RTN3-201ENST00000338850 ZFYVE16Q7Z3T8 1539 aa16.03■□□□□ 0.16
RTN3-201ENST00000338850 LRRIQ1Q96JM4 1722 aa16.02■□□□□ 0.16
RTN3-201ENST00000338850 PCF11O94913 1555 aaKnown RBP16.02■□□□□ 0.16
RTN3-201ENST00000338850 MYO5CQ9NQX4 1742 aa16.02■□□□□ 0.15
RTN3-201ENST00000338850 MADDQ8WXG6 1647 aa16.01■□□□□ 0.15
RTN3-201ENST00000338850 TIAM1Q13009 1591 aa16■□□□□ 0.15
RTN3-201ENST00000338850 CCDC18Q5T9S5 1454 aa15.99■□□□□ 0.15
RTN3-201ENST00000338850 DIEXFQ68CQ4 756 aaKnown RBP15.99■□□□□ 0.15
RTN3-201ENST00000338850 PELP1Q8IZL8 1130 aaKnown RBP15.99■□□□□ 0.15
RTN3-201ENST00000338850 ZNF316A6NFI3 1004 aaPredicted RBP15.98■□□□□ 0.15
RTN3-201ENST00000338850 ARHGAP5Q13017 1502 aa15.98■□□□□ 0.15
RTN3-201ENST00000338850 SIGLEC1Q9BZZ2 1709 aa15.97■□□□□ 0.15
RTN3-201ENST00000338850 FYCO1Q9BQS8 1478 aa15.97■□□□□ 0.15
RTN3-201ENST00000338850 ZNF518AQ6AHZ1 1483 aa15.95■□□□□ 0.14
RTN3-201ENST00000338850 RIMS1Q86UR5 1692 aaKnown RBP15.95■□□□□ 0.14
RTN3-201ENST00000338850 ATP10AO60312 1499 aa15.94■□□□□ 0.14
RTN3-201ENST00000338850 KDM5CP41229 1560 aa15.93■□□□□ 0.14
RTN3-201ENST00000338850 C9orf84Q5VXU9 1444 aa15.93■□□□□ 0.14
RTN3-201ENST00000338850 AFAP1Q8N556 730 aa15.92■□□□□ 0.14
RTN3-201ENST00000338850 ACIN1Q9UKV3 1341 aaKnown RBP15.92■□□□□ 0.14
RTN3-201ENST00000338850 CDC42BPBQ9Y5S2 1711 aa15.91■□□□□ 0.14
RTN3-201ENST00000338850 PREX2Q70Z35 1606 aa15.91■□□□□ 0.14
RTN3-201ENST00000338850 CENPBP07199 599 aaPredicted RBP15.91■□□□□ 0.14
RTN3-201ENST00000338850 ILDR1Q86SU0 546 aaPredicted RBP15.91■□□□□ 0.14
RTN3-201ENST00000338850 DHX57Q6P158 1386 aaKnown RBP15.9■□□□□ 0.14
RTN3-201ENST00000338850 MLECQ14165 292 aa15.9■□□□□ 0.14
RTN3-201ENST00000338850 SCAF1Q9H7N4 1312 aaKnown RBP15.9■□□□□ 0.14
RTN3-201ENST00000338850 LMTK3Q96Q04 1460 aa15.9■□□□□ 0.14
RTN3-201ENST00000338850 ABCC1P33527 1531 aa15.89■□□□□ 0.13
RTN3-201ENST00000338850 ARHGEF12Q9NZN5 1544 aa15.89■□□□□ 0.13
RTN3-201ENST00000338850 CCNB3Q8WWL7 1395 aa15.88■□□□□ 0.13
RTN3-201ENST00000338850 TRAPPC8Q9Y2L5 1435 aa15.88■□□□□ 0.13
RTN3-201ENST00000338850 POTEDQ86YR6 584 aa15.88■□□□□ 0.13
RTN3-201ENST00000338850 MLH3Q9UHC1 1453 aa15.87■□□□□ 0.13
RTN3-201ENST00000338850 DIP2CQ9Y2E4 1556 aa15.87■□□□□ 0.13
RTN3-201ENST00000338850 CDC42BPAQ5VT25 1732 aa15.85■□□□□ 0.13
RTN3-201ENST00000338850 FER1L4A9Z1Z3 1794 aa15.85■□□□□ 0.13
RTN3-201ENST00000338850 PLPPR3Q6T4P5 718 aa15.85■□□□□ 0.13
RTN3-201ENST00000338850 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.85■□□□□ 0.13
RTN3-201ENST00000338850 LRRC9Q6ZRR7 1453 aa15.84■□□□□ 0.13
RTN3-201ENST00000338850 GPATCH8Q9UKJ3 1502 aaKnown RBP15.84■□□□□ 0.13
RTN3-201ENST00000338850 REREQ9P2R6 1566 aa15.84■□□□□ 0.13
RTN3-201ENST00000338850 ITSN2Q9NZM3 1697 aa15.84■□□□□ 0.13
RTN3-201ENST00000338850 MYT1LQ9UL68 1186 aa15.84■□□□□ 0.13
RTN3-201ENST00000338850 ABCA6Q8N139 1617 aa15.83■□□□□ 0.13
RTN3-201ENST00000338850 SAMD9LQ8IVG5 1584 aa15.81■□□□□ 0.12
RTN3-201ENST00000338850 AGLP35573 1532 aa15.8■□□□□ 0.12
RTN3-201ENST00000338850 HSPA2P54652 639 aa15.8■□□□□ 0.12
RTN3-201ENST00000338850 ZNF777Q9ULD5 760 aaPredicted RBP15.8■□□□□ 0.12
RTN3-201ENST00000338850 MTUS2Q5JR59 1369 aa15.79■□□□□ 0.12
RTN3-201ENST00000338850 KANK4Q5T7N3 995 aaPredicted RBP15.79■□□□□ 0.12
RTN3-201ENST00000338850 SYCP2Q9BX26 1530 aa15.78■□□□□ 0.12
RTN3-201ENST00000338850 KIDINS220Q9ULH0 1771 aa15.78■□□□□ 0.12
RTN3-201ENST00000338850 CEBPAP49715 358 aaPredicted RBP15.78■□□□□ 0.12
RTN3-201ENST00000338850 CFDP1Q9UEE9 299 aaPredicted RBP15.77■□□□□ 0.12
RTN3-201ENST00000338850 KIAA1107Q9UPP5 1409 aa15.77■□□□□ 0.11
RTN3-201ENST00000338850 HNRNPMP52272 730 aaKnown RBP eCLIP15.76■□□□□ 0.11
RTN3-201ENST00000338850 PLEKHH2Q8IVE3 1493 aa15.76■□□□□ 0.11
RTN3-201ENST00000338850 SPAG9O60271 1321 aaKnown RBP15.75■□□□□ 0.11
RTN3-201ENST00000338850 EHBP1L1Q8N3D4 1523 aa15.74■□□□□ 0.11
RTN3-201ENST00000338850 NEUROD1Q13562 356 aa15.74■□□□□ 0.11
RTN3-201ENST00000338850 PREX1Q8TCU6 1659 aa15.72■□□□□ 0.11
RTN3-201ENST00000338850 INO80Q9ULG1 1556 aaPredicted RBP15.71■□□□□ 0.11
RTN3-201ENST00000338850 ATP7AQ04656 1500 aa15.71■□□□□ 0.11
RTN3-201ENST00000338850 FBXO41Q8TF61 875 aa15.7■□□□□ 0.1
RTN3-201ENST00000338850 ZNF644Q9H582 1327 aaPredicted RBP15.69■□□□□ 0.1
RTN3-201ENST00000338850 CNTLNQ9NXG0 1405 aa15.69■□□□□ 0.1
RTN3-201ENST00000338850 ESF1Q9H501 851 aaKnown RBP15.69■□□□□ 0.1
RTN3-201ENST00000338850 UHRF1BP1Q6BDS2 1440 aa15.68■□□□□ 0.1
RTN3-201ENST00000338850 SETD5Q9C0A6 1442 aa15.68■□□□□ 0.1
RTN3-201ENST00000338850 C3P01024 1663 aa15.68■□□□□ 0.1
RTN3-201ENST00000338850 MBD5Q9P267 1494 aa15.68■□□□□ 0.1
RTN3-201ENST00000338850 PLXNC1O60486 1568 aa15.67■□□□□ 0.1
RTN3-201ENST00000338850 A2MP01023 1474 aa15.67■□□□□ 0.1
RTN3-201ENST00000338850 TIMELESSQ9UNS1 1208 aa15.66■□□□□ 0.1
RTN3-201ENST00000338850 SETD1BQ9UPS6 1966 aaKnown RBP15.66■□□□□ 0.1
RTN3-201ENST00000338850 NCOA2Q15596 1464 aa15.65■□□□□ 0.1
RTN3-201ENST00000338850 RAB3GAP2Q9H2M9 1393 aa15.65■□□□□ 0.1
RTN3-201ENST00000338850 SUPT6HQ7KZ85 1726 aaKnown RBP15.64■□□□□ 0.09
RTN3-201ENST00000338850 RTEL1-TNFRSF6BF6WH68 1400 aa15.62■□□□□ 0.09
RTN3-201ENST00000338850 MROH2AA6NES4 1674 aa15.62■□□□□ 0.09
RTN3-201ENST00000338850 ZMYM3Q14202 1370 aa15.62■□□□□ 0.09
RTN3-201ENST00000338850 NPATQ14207 1427 aa15.61■□□□□ 0.09
RTN3-201ENST00000338850 CAMSAP2Q08AD1 1489 aa15.61■□□□□ 0.09
RTN3-201ENST00000338850 STRCQ7RTU9 1775 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms