RNA–Protein interactions for RNA: ENST00000333617.8

LSAMP-201, Transcript of limbic system associated membrane protein, humanhuman

TSL 2

Gene LSAMP, Length 1,561 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-201ENST00000333617 ERCC6Q03468 1493 aa13.24□□□□□ -0.29
LSAMP-201ENST00000333617 IFT140Q96RY7 1462 aa13.24□□□□□ -0.29
LSAMP-201ENST00000333617 THOC2Q8NI27 1593 aaKnown RBP13.23□□□□□ -0.29
LSAMP-201ENST00000333617 CCDC61Q9Y6R9 512 aa13.23□□□□□ -0.29
LSAMP-201ENST00000333617 CFAP43Q8NDM7 1665 aa13.22□□□□□ -0.29
LSAMP-201ENST00000333617 FHAD1B1AJZ9 1412 aa13.22□□□□□ -0.29
LSAMP-201ENST00000333617 MAP3K1Q13233 1512 aa13.22□□□□□ -0.29
LSAMP-201ENST00000333617 ADAMTS12P58397 1594 aa13.22□□□□□ -0.29
LSAMP-201ENST00000333617 TIAM1Q13009 1591 aa13.22□□□□□ -0.29
LSAMP-201ENST00000333617 VASPP50552 380 aaPredicted RBP13.21□□□□□ -0.29
LSAMP-201ENST00000333617 CDAN1Q8IWY9 1227 aa13.21□□□□□ -0.29
LSAMP-201ENST00000333617 PCF11O94913 1555 aaKnown RBP13.2□□□□□ -0.3
LSAMP-201ENST00000333617 NUBP1P53384 320 aa13.2□□□□□ -0.3
LSAMP-201ENST00000333617 SAMD9Q5K651 1589 aa13.2□□□□□ -0.3
LSAMP-201ENST00000333617 AQRO60306 1485 aaKnown RBP eCLIP13.2□□□□□ -0.3
LSAMP-201ENST00000333617 GRIN2BQ13224 1484 aa13.19□□□□□ -0.3
LSAMP-201ENST00000333617 CCER1Q8TC90 406 aaPredicted RBP13.19□□□□□ -0.3
LSAMP-201ENST00000333617 KANK4Q5T7N3 995 aaPredicted RBP13.18□□□□□ -0.3
LSAMP-201ENST00000333617 EIF4G3O43432 1585 aaKnown RBP13.17□□□□□ -0.3
LSAMP-201ENST00000333617 FAM163AQ96GL9 167 aaPredicted RBP13.17□□□□□ -0.3
LSAMP-201ENST00000333617 FHOD3Q2V2M9 1422 aa13.17□□□□□ -0.3
LSAMP-201ENST00000333617 MS4A3Q96HJ5 214 aa13.16□□□□□ -0.3
LSAMP-201ENST00000333617 ZNF608Q9ULD9 1512 aaPredicted RBP13.16□□□□□ -0.3
LSAMP-201ENST00000333617 FYCO1Q9BQS8 1478 aa13.16□□□□□ -0.3
LSAMP-201ENST00000333617 P3H3Q8IVL6 736 aa13.15□□□□□ -0.3
LSAMP-201ENST00000333617 MMRN1Q13201 1228 aa13.15□□□□□ -0.3
LSAMP-201ENST00000333617 KIF12Q96FN5 646 aa13.15□□□□□ -0.3
LSAMP-201ENST00000333617 FAM212AQ96EL1 285 aa13.14□□□□□ -0.31
LSAMP-201ENST00000333617 LRRIQ1Q96JM4 1722 aa13.13□□□□□ -0.31
LSAMP-201ENST00000333617 IQGAP2Q13576 1575 aa13.13□□□□□ -0.31
LSAMP-201ENST00000333617 FMN1Q68DA7 1419 aa13.12□□□□□ -0.31
LSAMP-201ENST00000333617 CASKIN1Q8WXD9 1431 aa13.12□□□□□ -0.31
LSAMP-201ENST00000333617 KLHL34Q8N239 644 aa13.12□□□□□ -0.31
LSAMP-201ENST00000333617 LRRC9Q6ZRR7 1453 aa13.12□□□□□ -0.31
LSAMP-201ENST00000333617 RRBP1Q9P2E9 1410 aaKnown RBP13.12□□□□□ -0.31
LSAMP-201ENST00000333617 SNAPC4Q5SXM2 1469 aa13.09□□□□□ -0.31
LSAMP-201ENST00000333617 MAP3K13O43283 966 aa13.07□□□□□ -0.32
LSAMP-201ENST00000333617 ATP1B4Q9UN42 357 aaPredicted RBP13.07□□□□□ -0.32
LSAMP-201ENST00000333617 CCNB3Q8WWL7 1395 aa13.06□□□□□ -0.32
LSAMP-201ENST00000333617 MAGI1Q96QZ7 1491 aaPredicted RBP13.06□□□□□ -0.32
LSAMP-201ENST00000333617 DCAF8Q5TAQ9 597 aa13.05□□□□□ -0.32
LSAMP-201ENST00000333617 GRIN2AQ12879 1464 aa13.04□□□□□ -0.32
LSAMP-201ENST00000333617 UGGT2Q9NYU1 1516 aa13.04□□□□□ -0.32
LSAMP-201ENST00000333617 ASTLQ6HA08 431 aaPredicted RBP13.03□□□□□ -0.32
LSAMP-201ENST00000333617 SGIP1Q9BQI5 828 aa13.03□□□□□ -0.32
LSAMP-201ENST00000333617 HECW1Q76N89 1606 aa13.01□□□□□ -0.33
LSAMP-201ENST00000333617 ATMINO43313 823 aaPredicted RBP13.01□□□□□ -0.33
LSAMP-201ENST00000333617 KIAA0586Q9BVV6 1533 aa13.01□□□□□ -0.33
LSAMP-201ENST00000333617 SUPT6HQ7KZ85 1726 aaKnown RBP13□□□□□ -0.33
LSAMP-201ENST00000333617 SYNJ2O15056 1496 aa13□□□□□ -0.33
LSAMP-201ENST00000333617 KIAA0556O60303 1618 aa13□□□□□ -0.33
LSAMP-201ENST00000333617 PHLDB1Q86UU1 1377 aa12.99□□□□□ -0.33
LSAMP-201ENST00000333617 PCDHB13Q9Y5F0 798 aa12.99□□□□□ -0.33
LSAMP-201ENST00000333617 CEP170Q5SW79 1584 aa12.98□□□□□ -0.33
LSAMP-201ENST00000333617 CCDC18Q5T9S5 1454 aa12.98□□□□□ -0.33
LSAMP-201ENST00000333617 MAMSTRQ6ZN01 415 aa12.98□□□□□ -0.33
LSAMP-201ENST00000333617 PELP1Q8IZL8 1130 aaKnown RBP12.98□□□□□ -0.33
LSAMP-201ENST00000333617 IFNLR1Q8IU57 520 aaPredicted RBP12.97□□□□□ -0.33
LSAMP-201ENST00000333617 EHBP1L1Q8N3D4 1523 aa12.97□□□□□ -0.33
LSAMP-201ENST00000333617 GSE1Q14687 1217 aa12.96□□□□□ -0.33
LSAMP-201ENST00000333617 MTUS2Q5JR59 1369 aa12.96□□□□□ -0.34
LSAMP-201ENST00000333617 TIE1P35590 1138 aa12.95□□□□□ -0.34
LSAMP-201ENST00000333617 CHMP7Q8WUX9 453 aaPredicted RBP12.95□□□□□ -0.34
LSAMP-201ENST00000333617 DISP1Q96F81 1524 aa12.95□□□□□ -0.34
LSAMP-201ENST00000333617 SPOCK2Q92563 424 aa12.94□□□□□ -0.34
LSAMP-201ENST00000333617 BMP2KQ9NSY1 1161 aaPredicted RBP12.94□□□□□ -0.34
LSAMP-201ENST00000333617 TRPC6Q9Y210 931 aa12.94□□□□□ -0.34
LSAMP-201ENST00000333617 SPNS2Q8IVW8 549 aa12.94□□□□□ -0.34
LSAMP-201ENST00000333617 SLC39A7Q92504 469 aa12.93□□□□□ -0.34
LSAMP-201ENST00000333617 EPRSP07814 1512 aaKnown RBP12.92□□□□□ -0.34
LSAMP-201ENST00000333617 ITGAEP38570 1179 aa12.92□□□□□ -0.34
LSAMP-201ENST00000333617 ATN1P54259 1190 aaPredicted RBP12.92□□□□□ -0.34
LSAMP-201ENST00000333617 RAPGEF6Q8TEU7 1601 aa12.92□□□□□ -0.34
LSAMP-201ENST00000333617 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.92□□□□□ -0.34
LSAMP-201ENST00000333617 CHD1O14646 1710 aa12.91□□□□□ -0.34
LSAMP-201ENST00000333617 C7P10643 843 aa12.91□□□□□ -0.34
LSAMP-201ENST00000333617 PYGBP11216 843 aa12.91□□□□□ -0.34
LSAMP-201ENST00000333617 IFNL1Q8IU54 200 aa12.91□□□□□ -0.34
LSAMP-201ENST00000333617 NUP160Q12769 1436 aa12.91□□□□□ -0.34
LSAMP-201ENST00000333617 FAM50AQ14320 339 aaKnown RBP12.9□□□□□ -0.34
LSAMP-201ENST00000333617 NCOA2Q15596 1464 aa12.9□□□□□ -0.34
LSAMP-201ENST00000333617 MAGI3Q5TCQ9 1506 aa12.9□□□□□ -0.34
LSAMP-201ENST00000333617 FGD6Q6ZV73 1430 aa12.9□□□□□ -0.34
LSAMP-201ENST00000333617 DHX57Q6P158 1386 aaKnown RBP12.9□□□□□ -0.34
LSAMP-201ENST00000333617 METRNQ9UJH8 293 aa12.9□□□□□ -0.35
LSAMP-201ENST00000333617 CLSPNQ9HAW4 1339 aa12.89□□□□□ -0.35
LSAMP-201ENST00000333617 CDK13Q14004 1512 aaKnown RBP12.89□□□□□ -0.35
LSAMP-201ENST00000333617 ARHGEF11O15085 1522 aa12.88□□□□□ -0.35
LSAMP-201ENST00000333617 TTLL13PA6NNM8 815 aa12.87□□□□□ -0.35
LSAMP-201ENST00000333617 MYOM3Q5VTT5 1437 aa12.87□□□□□ -0.35
LSAMP-201ENST00000333617 PTPN23Q9H3S7 1636 aa12.87□□□□□ -0.35
LSAMP-201ENST00000333617 SETD5Q9C0A6 1442 aa12.86□□□□□ -0.35
LSAMP-201ENST00000333617 RAB3GAP2Q9H2M9 1393 aa12.85□□□□□ -0.35
LSAMP-201ENST00000333617 CARMIL2Q6F5E8 1435 aa12.85□□□□□ -0.35
LSAMP-201ENST00000333617 NUP153P49790 1475 aaKnown RBP12.83□□□□□ -0.35
LSAMP-201ENST00000333617 CHRM1P11229 460 aaPredicted RBP12.82□□□□□ -0.36
LSAMP-201ENST00000333617 JPH4Q96JJ6 628 aa12.82□□□□□ -0.36
LSAMP-201ENST00000333617 CIZ1Q9ULV3 898 aaPredicted RBP12.81□□□□□ -0.36
LSAMP-201ENST00000333617 TMEM106CQ9BVX2 250 aa12.81□□□□□ -0.36
LSAMP-201ENST00000333617 TCOF1Q13428 1488 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms