RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 ITSN2Q9NZM3 1697 aa23.51■■□□□ 1.35
PDLIM5-202ENST00000318007 CDC42BPBQ9Y5S2 1711 aa23.5■■□□□ 1.35
PDLIM5-202ENST00000318007 PREX2Q70Z35 1606 aa23.49■■□□□ 1.35
PDLIM5-202ENST00000318007 CD109Q6YHK3 1445 aa23.49■■□□□ 1.35
PDLIM5-202ENST00000318007 TSPOAP1O95153 1857 aa23.48■■□□□ 1.35
PDLIM5-202ENST00000318007 PTPN23Q9H3S7 1636 aa23.47■■□□□ 1.35
PDLIM5-202ENST00000318007 RRBP1Q9P2E9 1410 aaKnown RBP23.46■■□□□ 1.35
PDLIM5-202ENST00000318007 KIF13AQ9H1H9 1805 aa23.46■■□□□ 1.35
PDLIM5-202ENST00000318007 PLCH2O75038 1416 aa23.45■■□□□ 1.34
PDLIM5-202ENST00000318007 CAMSAP2Q08AD1 1489 aa23.43■■□□□ 1.34
PDLIM5-202ENST00000318007 MAP3K4Q9Y6R4 1608 aa23.42■■□□□ 1.34
PDLIM5-202ENST00000318007 MIA2Q96PC5 1412 aa23.42■■□□□ 1.34
PDLIM5-202ENST00000318007 FANCAO15360 1455 aa23.42■■□□□ 1.34
PDLIM5-202ENST00000318007 SAMD9LQ8IVG5 1584 aa23.4■■□□□ 1.34
PDLIM5-202ENST00000318007 HNRNPMP52272 730 aaKnown RBP eCLIP23.4■■□□□ 1.345e-6■■■□□ 18.5
PDLIM5-202ENST00000318007 GLI2P10070 1586 aa23.4■■□□□ 1.34
PDLIM5-202ENST00000318007 EFCAB2Q5VUJ9 269 aa23.4■■□□□ 1.34
PDLIM5-202ENST00000318007 SYCP2Q9BX26 1530 aa23.36■■□□□ 1.33
PDLIM5-202ENST00000318007 CHIC2Q9UKJ5 165 aa23.35■■□□□ 1.33
PDLIM5-202ENST00000318007 TCOF1Q13428 1488 aaKnown RBP23.34■■□□□ 1.33
PDLIM5-202ENST00000318007 PPRC1Q5VV67 1664 aaKnown RBP23.31■■□□□ 1.32
PDLIM5-202ENST00000318007 ADGRL1O94910 1474 aa23.31■■□□□ 1.32
PDLIM5-202ENST00000318007 ARHGEF12Q9NZN5 1544 aa23.31■■□□□ 1.32
PDLIM5-202ENST00000318007 AKNAQ7Z591 1439 aa23.3■■□□□ 1.32
PDLIM5-202ENST00000318007 ARAP3Q8WWN8 1544 aa23.3■■□□□ 1.32
PDLIM5-202ENST00000318007 ABCC1P33527 1531 aa23.28■■□□□ 1.32
PDLIM5-202ENST00000318007 PTPRKQ15262 1439 aa23.28■■□□□ 1.32
PDLIM5-202ENST00000318007 SCAPERQ9BY12 1400 aa23.28■■□□□ 1.32
PDLIM5-202ENST00000318007 DAPK1P53355 1430 aa23.27■■□□□ 1.32
PDLIM5-202ENST00000318007 AFAP1Q8N556 730 aa23.27■■□□□ 1.32
PDLIM5-202ENST00000318007 TRAPPC8Q9Y2L5 1435 aa23.25■■□□□ 1.31
PDLIM5-202ENST00000318007 ABCC5O15440 1437 aa23.25■■□□□ 1.31
PDLIM5-202ENST00000318007 MBD5Q9P267 1494 aa23.25■■□□□ 1.31
PDLIM5-202ENST00000318007 RAPGEF3O95398 923 aa23.25■■□□□ 1.31
PDLIM5-202ENST00000318007 DNMT1P26358 1616 aaKnown RBP23.24■■□□□ 1.31
PDLIM5-202ENST00000318007 MYT1LQ9UL68 1186 aa23.24■■□□□ 1.31
PDLIM5-202ENST00000318007 CFAP74Q9C0B2 1584 aa23.24■■□□□ 1.31
PDLIM5-202ENST00000318007 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.23■■□□□ 1.31
PDLIM5-202ENST00000318007 TEX14Q8IWB6 1497 aa23.23■■□□□ 1.31
PDLIM5-202ENST00000318007 RRP7BPQ9NSQ0 103 aa23.21■■□□□ 1.31
PDLIM5-202ENST00000318007 PLEKHH2Q8IVE3 1493 aa23.21■■□□□ 1.31
PDLIM5-202ENST00000318007 NEO1Q92859 1461 aa23.21■■□□□ 1.31
PDLIM5-202ENST00000318007 CCDC141Q6ZP82 1450 aa23.21■■□□□ 1.31
PDLIM5-202ENST00000318007 TSPY4P0CV99 314 aa23.2■■□□□ 1.3
PDLIM5-202ENST00000318007 TSPY10P0CW01 314 aa23.2■■□□□ 1.3
PDLIM5-202ENST00000318007 KIAA1107Q9UPP5 1409 aa23.19■■□□□ 1.3
PDLIM5-202ENST00000318007 CROCC2H7BZ55 1655 aa23.17■■□□□ 1.3
PDLIM5-202ENST00000318007 C9orf84Q5VXU9 1444 aa23.17■■□□□ 1.3
PDLIM5-202ENST00000318007 ARHGEF5Q12774 1597 aa23.16■■□□□ 1.3
PDLIM5-202ENST00000318007 DENND4BO75064 1496 aaPredicted RBP23.14■■□□□ 1.3
PDLIM5-202ENST00000318007 POGZQ7Z3K3 1410 aa23.14■■□□□ 1.29
PDLIM5-202ENST00000318007 COL17A1Q9UMD9 1497 aaPredicted RBP23.13■■□□□ 1.29
PDLIM5-202ENST00000318007 SPAG9O60271 1321 aaKnown RBP23.13■■□□□ 1.29
PDLIM5-202ENST00000318007 ZNF518AQ6AHZ1 1483 aa23.12■■□□□ 1.29
PDLIM5-202ENST00000318007 RSPH4AQ5TD94 716 aa23.1■■□□□ 1.29
PDLIM5-202ENST00000318007 RICTORQ6R327 1708 aa23.08■■□□□ 1.29
PDLIM5-202ENST00000318007 FRMPD1Q5SYB0 1578 aa23.08■■□□□ 1.28
PDLIM5-202ENST00000318007 SHANK2Q9UPX8 1470 aa23.07■■□□□ 1.28
PDLIM5-202ENST00000318007 ADGBQ8N7X0 1667 aa23.07■■□□□ 1.28
PDLIM5-202ENST00000318007 ZFYVE16Q7Z3T8 1539 aa23.06■■□□□ 1.28
PDLIM5-202ENST00000318007 ANKRD30AQ9BXX3 1397 aa23.06■■□□□ 1.28
PDLIM5-202ENST00000318007 NCOA1Q15788 1441 aa23.05■■□□□ 1.28
PDLIM5-202ENST00000318007 ATP7AQ04656 1500 aa23.05■■□□□ 1.28
PDLIM5-202ENST00000318007 KIF15Q9NS87 1388 aa23.04■■□□□ 1.28
PDLIM5-202ENST00000318007 KDM5CP41229 1560 aa23.03■■□□□ 1.28
PDLIM5-202ENST00000318007 NAIPQ13075 1403 aa23.03■■□□□ 1.28
PDLIM5-202ENST00000318007 KDM6BO15054 1643 aa23.03■■□□□ 1.28
PDLIM5-202ENST00000318007 HECW2Q9P2P5 1572 aa23.02■■□□□ 1.28
PDLIM5-202ENST00000318007 INO80Q9ULG1 1556 aaPredicted RBP23.02■■□□□ 1.28
PDLIM5-202ENST00000318007 RAB3GAP2Q9H2M9 1393 aa23.02■■□□□ 1.28
PDLIM5-202ENST00000318007 KIDINS220Q9ULH0 1771 aa23.01■■□□□ 1.27
PDLIM5-202ENST00000318007 HFM1A2PYH4 1435 aa23.01■■□□□ 1.27
PDLIM5-202ENST00000318007 SETD5Q9C0A6 1442 aa23.01■■□□□ 1.27
PDLIM5-202ENST00000318007 YEATS2Q9ULM3 1422 aa23.01■■□□□ 1.27
PDLIM5-202ENST00000318007 MAST1Q9Y2H9 1570 aa23.01■■□□□ 1.27
PDLIM5-202ENST00000318007 ADGRL2O95490 1459 aa23■■□□□ 1.27
PDLIM5-202ENST00000318007 ROCK1Q13464 1354 aa23■■□□□ 1.27
PDLIM5-202ENST00000318007 GCC2Q8IWJ2 1684 aa22.97■■□□□ 1.27
PDLIM5-202ENST00000318007 ABCA6Q8N139 1617 aa22.96■■□□□ 1.27
PDLIM5-202ENST00000318007 PLXNC1O60486 1568 aa22.95■■□□□ 1.26
PDLIM5-202ENST00000318007 MLH3Q9UHC1 1453 aa22.95■■□□□ 1.26
PDLIM5-202ENST00000318007 RTEL1-TNFRSF6BF6WH68 1400 aa22.95■■□□□ 1.26
PDLIM5-202ENST00000318007 ANKRD50Q9ULJ7 1429 aa22.94■■□□□ 1.26
PDLIM5-202ENST00000318007 TRIM52Q96A61 297 aa22.92■■□□□ 1.26
PDLIM5-202ENST00000318007 ZMYM4Q5VZL5 1548 aa22.92■■□□□ 1.26
PDLIM5-202ENST00000318007 DIP2CQ9Y2E4 1556 aa22.91■■□□□ 1.26
PDLIM5-202ENST00000318007 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.9■■□□□ 1.262e-6■■□□□ 12.3
PDLIM5-202ENST00000318007 DUOX2Q9NRD8 1548 aa22.89■■□□□ 1.25
PDLIM5-202ENST00000318007 A2MP01023 1474 aa22.87■■□□□ 1.25
PDLIM5-202ENST00000318007 KIF3BO15066 747 aa22.87■■□□□ 1.25
PDLIM5-202ENST00000318007 DHX29Q7Z478 1369 aaKnown RBP22.84■■□□□ 1.25
PDLIM5-202ENST00000318007 ARHGEF40Q8TER5 1519 aa22.83■■□□□ 1.25
PDLIM5-202ENST00000318007 MAGI2Q86UL8 1455 aa22.83■■□□□ 1.25
PDLIM5-202ENST00000318007 ERBINQ96RT1 1412 aa22.82■■□□□ 1.24
PDLIM5-202ENST00000318007 GGT6Q6P531 493 aa22.82■■□□□ 1.24
PDLIM5-202ENST00000318007 MLECQ14165 292 aa22.81■■□□□ 1.24
PDLIM5-202ENST00000318007 SIGLEC1Q9BZZ2 1709 aa22.81■■□□□ 1.24
PDLIM5-202ENST00000318007 ATP10AO60312 1499 aa22.81■■□□□ 1.24
PDLIM5-202ENST00000318007 ARID4BQ4LE39 1312 aaPredicted RBP22.8■■□□□ 1.24
PDLIM5-202ENST00000318007 CCER1Q8TC90 406 aaPredicted RBP22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms