RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 KIF14Q15058 1648 aa11.97□□□□□ -0.49
PDLIM5-201ENST00000317968 HFM1A2PYH4 1435 aa11.97□□□□□ -0.49
PDLIM5-201ENST00000317968 CDK13Q14004 1512 aaKnown RBP11.96□□□□□ -0.49
PDLIM5-201ENST00000317968 SPAG9O60271 1321 aaKnown RBP11.96□□□□□ -0.49
PDLIM5-201ENST00000317968 DIEXFQ68CQ4 756 aaKnown RBP11.95□□□□□ -0.5
PDLIM5-201ENST00000317968 DHX57Q6P158 1386 aaKnown RBP11.94□□□□□ -0.5
PDLIM5-201ENST00000317968 ABCC2Q92887 1545 aa11.93□□□□□ -0.5
PDLIM5-201ENST00000317968 ATP10BO94823 1461 aa11.93□□□□□ -0.5
PDLIM5-201ENST00000317968 UHRF1BP1LA0JNW5 1464 aa11.92□□□□□ -0.5
PDLIM5-201ENST00000317968 ARHGAP5Q13017 1502 aa11.91□□□□□ -0.5
PDLIM5-201ENST00000317968 NEFMP07197 916 aa11.91□□□□□ -0.5
PDLIM5-201ENST00000317968 MPHOSPH9Q99550 1183 aa11.91□□□□□ -0.5
PDLIM5-201ENST00000317968 TCOF1Q13428 1488 aaKnown RBP11.91□□□□□ -0.5
PDLIM5-201ENST00000317968 ITSN2Q9NZM3 1697 aa11.91□□□□□ -0.5
PDLIM5-201ENST00000317968 SLC24A1O60721 1099 aa11.91□□□□□ -0.5
PDLIM5-201ENST00000317968 CHGAP10645 457 aaKnown RBP11.9□□□□□ -0.5
PDLIM5-201ENST00000317968 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.9□□□□□ -0.52e-6■□□□□ 11
PDLIM5-201ENST00000317968 PTPN23Q9H3S7 1636 aa11.9□□□□□ -0.5
PDLIM5-201ENST00000317968 NUP155O75694 1391 aa11.9□□□□□ -0.5
PDLIM5-201ENST00000317968 DAPK1P53355 1430 aa11.9□□□□□ -0.51
PDLIM5-201ENST00000317968 HNRNPMP52272 730 aaKnown RBP eCLIP11.9□□□□□ -0.515e-6■■■□□ 18.5
PDLIM5-201ENST00000317968 CYB5RLQ6IPT4 315 aa11.88□□□□□ -0.51
PDLIM5-201ENST00000317968 STAC3Q96MF2 364 aa11.88□□□□□ -0.51
PDLIM5-201ENST00000317968 ANKRD50Q9ULJ7 1429 aa11.88□□□□□ -0.51
PDLIM5-201ENST00000317968 ABCA8O94911 1581 aa11.88□□□□□ -0.51
PDLIM5-201ENST00000317968 CCDC141Q6ZP82 1450 aa11.88□□□□□ -0.51
PDLIM5-201ENST00000317968 KIF15Q9NS87 1388 aa11.88□□□□□ -0.51
PDLIM5-201ENST00000317968 GPATCH8Q9UKJ3 1502 aaKnown RBP11.87□□□□□ -0.51
PDLIM5-201ENST00000317968 KIAA1107Q9UPP5 1409 aa11.87□□□□□ -0.51
PDLIM5-201ENST00000317968 C9orf84Q5VXU9 1444 aa11.86□□□□□ -0.51
PDLIM5-201ENST00000317968 NEFLP07196 543 aa11.86□□□□□ -0.51
PDLIM5-201ENST00000317968 EIF4G2P78344 907 aaKnown RBP eCLIP11.86□□□□□ -0.51
PDLIM5-201ENST00000317968 CAMSAP2Q08AD1 1489 aa11.85□□□□□ -0.51
PDLIM5-201ENST00000317968 CHD1O14646 1710 aa11.85□□□□□ -0.51
PDLIM5-201ENST00000317968 PKD2Q13563 968 aa11.84□□□□□ -0.51
PDLIM5-201ENST00000317968 AEBP2Q6ZN18 517 aaPredicted RBP11.84□□□□□ -0.51
PDLIM5-201ENST00000317968 NAIPQ13075 1403 aa11.84□□□□□ -0.51
PDLIM5-201ENST00000317968 PLCH2O75038 1416 aa11.83□□□□□ -0.51
PDLIM5-201ENST00000317968 PPP1R15AO75807 674 aaPredicted RBP11.83□□□□□ -0.52
PDLIM5-201ENST00000317968 ZNF326Q5BKZ1 582 aaKnown RBP11.83□□□□□ -0.52
PDLIM5-201ENST00000317968 SHANK2Q9UPX8 1470 aa11.83□□□□□ -0.52
PDLIM5-201ENST00000317968 ARHGEF11O15085 1522 aa11.83□□□□□ -0.52
PDLIM5-201ENST00000317968 WDR7Q9Y4E6 1490 aa11.82□□□□□ -0.52
PDLIM5-201ENST00000317968 ANP32CO43423 234 aa11.82□□□□□ -0.52
PDLIM5-201ENST00000317968 ABCC5O15440 1437 aa11.82□□□□□ -0.52
PDLIM5-201ENST00000317968 ZNF644Q9H582 1327 aaPredicted RBP11.82□□□□□ -0.52
PDLIM5-201ENST00000317968 KDM5BQ9UGL1 1544 aa11.81□□□□□ -0.52
PDLIM5-201ENST00000317968 C14orf37Q86TY3 774 aa11.8□□□□□ -0.52
PDLIM5-201ENST00000317968 CLASP1Q7Z460 1538 aa11.8□□□□□ -0.52
PDLIM5-201ENST00000317968 NCOA1Q15788 1441 aa11.79□□□□□ -0.52
PDLIM5-201ENST00000317968 CD109Q6YHK3 1445 aa11.79□□□□□ -0.52
PDLIM5-201ENST00000317968 CDCA8Q53HL2 280 aa11.78□□□□□ -0.52
PDLIM5-201ENST00000317968 SIN3AQ96ST3 1273 aa11.78□□□□□ -0.52
PDLIM5-201ENST00000317968 KIF3BO15066 747 aa11.78□□□□□ -0.52
PDLIM5-201ENST00000317968 HDGFP51858 240 aaKnown RBP11.78□□□□□ -0.52
PDLIM5-201ENST00000317968 FAM69CQ0P6D2 419 aa11.77□□□□□ -0.52
PDLIM5-201ENST00000317968 ASXL2Q76L83 1435 aa11.77□□□□□ -0.53
PDLIM5-201ENST00000317968 SCAPERQ9BY12 1400 aa11.77□□□□□ -0.53
PDLIM5-201ENST00000317968 SHROOM2Q13796 1616 aa11.77□□□□□ -0.53
PDLIM5-201ENST00000317968 CCDC144AA2RUR9 1427 aa11.76□□□□□ -0.53
PDLIM5-201ENST00000317968 RTEL1-TNFRSF6BF6WH68 1400 aa11.75□□□□□ -0.53
PDLIM5-201ENST00000317968 ADGRL2O95490 1459 aa11.75□□□□□ -0.53
PDLIM5-201ENST00000317968 ADGRL1O94910 1474 aa11.74□□□□□ -0.53
PDLIM5-201ENST00000317968 FANCAO15360 1455 aa11.74□□□□□ -0.53
PDLIM5-201ENST00000317968 TEX14Q8IWB6 1497 aa11.74□□□□□ -0.53
PDLIM5-201ENST00000317968 ARAP3Q8WWN8 1544 aa11.74□□□□□ -0.53
PDLIM5-201ENST00000317968 ABCC10Q5T3U5 1492 aa11.73□□□□□ -0.53
PDLIM5-201ENST00000317968 DNMT1P26358 1616 aaKnown RBP11.73□□□□□ -0.53
PDLIM5-201ENST00000317968 ADCY10Q96PN6 1610 aa11.72□□□□□ -0.53
PDLIM5-201ENST00000317968 ARHGEF5Q12774 1597 aa11.71□□□□□ -0.53
PDLIM5-201ENST00000317968 HAP1P54257 671 aaPredicted RBP11.71□□□□□ -0.54
PDLIM5-201ENST00000317968 PPP6R1Q9UPN7 881 aa11.71□□□□□ -0.54
PDLIM5-201ENST00000317968 WASHC2CQ9Y4E1 1318 aa11.71□□□□□ -0.54
PDLIM5-201ENST00000317968 DENND4BO75064 1496 aaPredicted RBP11.71□□□□□ -0.54
PDLIM5-201ENST00000317968 GGT6Q6P531 493 aa11.7□□□□□ -0.54
PDLIM5-201ENST00000317968 SCAF1Q9H7N4 1312 aaKnown RBP11.7□□□□□ -0.54
PDLIM5-201ENST00000317968 ERBINQ96RT1 1412 aa11.7□□□□□ -0.54
PDLIM5-201ENST00000317968 MAGI3Q5TCQ9 1506 aa11.7□□□□□ -0.54
PDLIM5-201ENST00000317968 AFAP1Q8N556 730 aa11.7□□□□□ -0.54
PDLIM5-201ENST00000317968 CARD11Q9BXL7 1154 aa11.7□□□□□ -0.54
PDLIM5-201ENST00000317968 KDM2AQ9Y2K7 1162 aa11.7□□□□□ -0.54
PDLIM5-201ENST00000317968 DUOX2Q9NRD8 1548 aa11.69□□□□□ -0.54
PDLIM5-201ENST00000317968 L3MBTL2Q969R5 705 aa11.69□□□□□ -0.54
PDLIM5-201ENST00000317968 ZNF518AQ6AHZ1 1483 aa11.69□□□□□ -0.54
PDLIM5-201ENST00000317968 NEO1Q92859 1461 aa11.68□□□□□ -0.54
PDLIM5-201ENST00000317968 DCAF11Q8TEB1 546 aa11.68□□□□□ -0.54
PDLIM5-201ENST00000317968 MAPKBP1O60336 1514 aa11.67□□□□□ -0.54
PDLIM5-201ENST00000317968 CFAP74Q9C0B2 1584 aa11.67□□□□□ -0.54
PDLIM5-201ENST00000317968 RGL3Q3MIN7 710 aa11.67□□□□□ -0.54
PDLIM5-201ENST00000317968 DHX29Q7Z478 1369 aaKnown RBP11.67□□□□□ -0.54
PDLIM5-201ENST00000317968 ZBTB47Q9UFB7 747 aaPredicted RBP11.66□□□□□ -0.54
PDLIM5-201ENST00000317968 PTPRKQ15262 1439 aa11.65□□□□□ -0.54
PDLIM5-201ENST00000317968 EIF3AQ14152 1382 aaKnown RBP11.65□□□□□ -0.54
PDLIM5-201ENST00000317968 ROCK2O75116 1388 aaKnown RBP11.65□□□□□ -0.54
PDLIM5-201ENST00000317968 CNGB1Q14028 1251 aaPredicted RBP11.64□□□□□ -0.55
PDLIM5-201ENST00000317968 SYCP2Q9BX26 1530 aa11.64□□□□□ -0.55
PDLIM5-201ENST00000317968 ANKRD30BQ9BXX2 1392 aa11.63□□□□□ -0.55
PDLIM5-201ENST00000317968 DDX10Q13206 875 aaKnown RBP11.63□□□□□ -0.55
PDLIM5-201ENST00000317968 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.63□□□□□ -0.55
PDLIM5-201ENST00000317968 MYO5CQ9NQX4 1742 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms