RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 ABCC2Q92887 1545 aa19.16■□□□□ 0.66
CPNE1-201ENST00000317677 CLSPNQ9HAW4 1339 aa19.15■□□□□ 0.66
CPNE1-201ENST00000317677 FAM69CQ0P6D2 419 aa19.14■□□□□ 0.65
CPNE1-201ENST00000317677 HFM1A2PYH4 1435 aa19.14■□□□□ 0.65
CPNE1-201ENST00000317677 ITSN2Q9NZM3 1697 aa19.14■□□□□ 0.65
CPNE1-201ENST00000317677 GPATCH8Q9UKJ3 1502 aaKnown RBP19.13■□□□□ 0.65
CPNE1-201ENST00000317677 CDC42BPAQ5VT25 1732 aa19.12■□□□□ 0.65
CPNE1-201ENST00000317677 NAIPQ13075 1403 aa19.12■□□□□ 0.65
CPNE1-201ENST00000317677 DIP2BQ9P265 1576 aa19.12■□□□□ 0.65
CPNE1-201ENST00000317677 ZNF644Q9H582 1327 aaPredicted RBP19.1■□□□□ 0.65
CPNE1-201ENST00000317677 DNMT1P26358 1616 aaKnown RBP19.1■□□□□ 0.65
CPNE1-201ENST00000317677 GCC2Q8IWJ2 1684 aa19.1■□□□□ 0.65
CPNE1-201ENST00000317677 PLEKHD1A6NEE1 506 aa19.07■□□□□ 0.64
CPNE1-201ENST00000317677 DAPK1P53355 1430 aa19.07■□□□□ 0.64
CPNE1-201ENST00000317677 CAMSAP2Q08AD1 1489 aa19.06■□□□□ 0.64
CPNE1-201ENST00000317677 KDM6BO15054 1643 aa19.06■□□□□ 0.64
CPNE1-201ENST00000317677 ABCC5O15440 1437 aa19.06■□□□□ 0.64
CPNE1-201ENST00000317677 KDM5BQ9UGL1 1544 aa19.05■□□□□ 0.64
CPNE1-201ENST00000317677 ASXL2Q76L83 1435 aa19.05■□□□□ 0.64
CPNE1-201ENST00000317677 AKNAQ7Z591 1439 aa19.04■□□□□ 0.64
CPNE1-201ENST00000317677 DIEXFQ68CQ4 756 aaKnown RBP19.04■□□□□ 0.64
CPNE1-201ENST00000317677 CHIC2Q9UKJ5 165 aa19.03■□□□□ 0.64
CPNE1-201ENST00000317677 ZCCHC11Q5TAX3 1644 aaKnown RBP19.03■□□□□ 0.64
CPNE1-201ENST00000317677 TSPOAP1O95153 1857 aa19.02■□□□□ 0.63
CPNE1-201ENST00000317677 CROCC2H7BZ55 1655 aa19.01■□□□□ 0.63
CPNE1-201ENST00000317677 RRP7BPQ9NSQ0 103 aa19.01■□□□□ 0.63
CPNE1-201ENST00000317677 CFDP1Q9UEE9 299 aaPredicted RBP19.01■□□□□ 0.63
CPNE1-201ENST00000317677 CDC42BPBQ9Y5S2 1711 aa19■□□□□ 0.63
CPNE1-201ENST00000317677 GLI2P10070 1586 aa18.99■□□□□ 0.63
CPNE1-201ENST00000317677 TTC37Q6PGP7 1564 aa18.99■□□□□ 0.63
CPNE1-201ENST00000317677 BCL11AQ9H165 835 aa18.99■□□□□ 0.63
CPNE1-201ENST00000317677 PREX2Q70Z35 1606 aa18.98■□□□□ 0.63
CPNE1-201ENST00000317677 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.97■□□□□ 0.63
CPNE1-201ENST00000317677 ROCK1Q13464 1354 aa18.96■□□□□ 0.63
CPNE1-201ENST00000317677 ADGBQ8N7X0 1667 aa18.96■□□□□ 0.63
CPNE1-201ENST00000317677 ZNF777Q9ULD5 760 aaPredicted RBP18.93■□□□□ 0.62
CPNE1-201ENST00000317677 DENND4BO75064 1496 aaPredicted RBP18.93■□□□□ 0.62
CPNE1-201ENST00000317677 SAMD9LQ8IVG5 1584 aa18.93■□□□□ 0.62
CPNE1-201ENST00000317677 WDR7Q9Y4E6 1490 aa18.93■□□□□ 0.62
CPNE1-201ENST00000317677 SIN3AQ96ST3 1273 aa18.91■□□□□ 0.62
CPNE1-201ENST00000317677 ADGRL2O95490 1459 aa18.91■□□□□ 0.62
CPNE1-201ENST00000317677 MYO5CQ9NQX4 1742 aa18.9■□□□□ 0.62
CPNE1-201ENST00000317677 MBD5Q9P267 1494 aa18.88■□□□□ 0.61
CPNE1-201ENST00000317677 MAP3K4Q9Y6R4 1608 aa18.88■□□□□ 0.61
CPNE1-201ENST00000317677 ARHGEF5Q12774 1597 aa18.88■□□□□ 0.61
CPNE1-201ENST00000317677 NCOA1Q15788 1441 aa18.88■□□□□ 0.61
CPNE1-201ENST00000317677 PPRC1Q5VV67 1664 aaKnown RBP18.87■□□□□ 0.61
CPNE1-201ENST00000317677 SHANK2Q9UPX8 1470 aa18.86■□□□□ 0.61
CPNE1-201ENST00000317677 ZNF316A6NFI3 1004 aaPredicted RBP18.86■□□□□ 0.61
CPNE1-201ENST00000317677 TEX14Q8IWB6 1497 aa18.86■□□□□ 0.61
CPNE1-201ENST00000317677 KCNH8Q96L42 1107 aa18.84■□□□□ 0.61
CPNE1-201ENST00000317677 ARHGAP5Q13017 1502 aa18.83■□□□□ 0.61
CPNE1-201ENST00000317677 ANP32EQ9BTT0 268 aa18.83■□□□□ 0.61
CPNE1-201ENST00000317677 C9orf84Q5VXU9 1444 aa18.82■□□□□ 0.6
CPNE1-201ENST00000317677 SYCP2Q9BX26 1530 aa18.82■□□□□ 0.6
CPNE1-201ENST00000317677 HNRNPMP52272 730 aaKnown RBP eCLIP18.81■□□□□ 0.64e-7■■■□□ 16.7
CPNE1-201ENST00000317677 CCDC141Q6ZP82 1450 aa18.79■□□□□ 0.6
CPNE1-201ENST00000317677 ANKRD30AQ9BXX3 1397 aa18.78■□□□□ 0.6
CPNE1-201ENST00000317677 PLCH2O75038 1416 aa18.78■□□□□ 0.6
CPNE1-201ENST00000317677 CD109Q6YHK3 1445 aa18.78■□□□□ 0.6
CPNE1-201ENST00000317677 TRIM52Q96A61 297 aa18.78■□□□□ 0.6
CPNE1-201ENST00000317677 ARHGEF12Q9NZN5 1544 aa18.78■□□□□ 0.6
CPNE1-201ENST00000317677 AEBP2Q6ZN18 517 aaPredicted RBP18.77■□□□□ 0.6
CPNE1-201ENST00000317677 PZPP20742 1482 aa18.76■□□□□ 0.59
CPNE1-201ENST00000317677 MPHOSPH9Q99550 1183 aa18.76■□□□□ 0.59
CPNE1-201ENST00000317677 MAST1Q9Y2H9 1570 aa18.76■□□□□ 0.59
CPNE1-201ENST00000317677 ABCA9Q8IUA7 1624 aa18.74■□□□□ 0.59
CPNE1-201ENST00000317677 ABCC1P33527 1531 aa18.73■□□□□ 0.59
CPNE1-201ENST00000317677 ANKRD50Q9ULJ7 1429 aa18.73■□□□□ 0.59
CPNE1-201ENST00000317677 KIAA1107Q9UPP5 1409 aa18.73■□□□□ 0.59
CPNE1-201ENST00000317677 TIMELESSQ9UNS1 1208 aa18.72■□□□□ 0.59
CPNE1-201ENST00000317677 ARAP3Q8WWN8 1544 aa18.72■□□□□ 0.59
CPNE1-201ENST00000317677 PLEKHH2Q8IVE3 1493 aa18.71■□□□□ 0.59
CPNE1-201ENST00000317677 TSPY4P0CV99 314 aa18.7■□□□□ 0.58
CPNE1-201ENST00000317677 TSPY10P0CW01 314 aa18.7■□□□□ 0.58
CPNE1-201ENST00000317677 FOXD1Q16676 465 aa18.7■□□□□ 0.58
CPNE1-201ENST00000317677 KIF15Q9NS87 1388 aa18.7■□□□□ 0.58
CPNE1-201ENST00000317677 PPP1R15AO75807 674 aaPredicted RBP18.68■□□□□ 0.58
CPNE1-201ENST00000317677 PLXNC1O60486 1568 aa18.68■□□□□ 0.58
CPNE1-201ENST00000317677 RSPH4AQ5TD94 716 aa18.68■□□□□ 0.58
CPNE1-201ENST00000317677 ANKRD30BQ9BXX2 1392 aa18.67■□□□□ 0.58
CPNE1-201ENST00000317677 COL17A1Q9UMD9 1497 aaPredicted RBP18.67■□□□□ 0.58
CPNE1-201ENST00000317677 KDM5DQ9BY66 1539 aa18.66■□□□□ 0.58
CPNE1-201ENST00000317677 EFCAB2Q5VUJ9 269 aa18.66■□□□□ 0.58
CPNE1-201ENST00000317677 TONSLQ96HA7 1378 aa18.66■□□□□ 0.58
CPNE1-201ENST00000317677 TRAPPC8Q9Y2L5 1435 aa18.66■□□□□ 0.58
CPNE1-201ENST00000317677 SLC4A1APQ9BWU0 796 aaKnown RBP18.64■□□□□ 0.58
CPNE1-201ENST00000317677 FANCAO15360 1455 aa18.6■□□□□ 0.57
CPNE1-201ENST00000317677 RPRD2Q5VT52 1461 aaKnown RBP18.6■□□□□ 0.57
CPNE1-201ENST00000317677 UNC13BO14795 1591 aa18.6■□□□□ 0.57
CPNE1-201ENST00000317677 NEO1Q92859 1461 aa18.59■□□□□ 0.57
CPNE1-201ENST00000317677 NUP155O75694 1391 aa18.58■□□□□ 0.57
CPNE1-201ENST00000317677 ZFYVE16Q7Z3T8 1539 aa18.58■□□□□ 0.56
CPNE1-201ENST00000317677 DUOX2Q9NRD8 1548 aa18.57■□□□□ 0.56
CPNE1-201ENST00000317677 PKD2Q13563 968 aa18.55■□□□□ 0.56
CPNE1-201ENST00000317677 CFAP74Q9C0B2 1584 aa18.55■□□□□ 0.56
CPNE1-201ENST00000317677 INO80Q9ULG1 1556 aaPredicted RBP18.55■□□□□ 0.56
CPNE1-201ENST00000317677 FAM135AQ9P2D6 1515 aa18.55■□□□□ 0.56
CPNE1-201ENST00000317677 PRKCSHP14314 528 aaPredicted RBP18.53■□□□□ 0.56
CPNE1-201ENST00000317677 AFAP1Q8N556 730 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms