RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 MYOM3Q5VTT5 1437 aa27.93■■■□□ 2.06
HMGA1-201ENST00000311487 EFCAB2Q5VUJ9 269 aa27.91■■■□□ 2.06
HMGA1-201ENST00000311487 FANCAO15360 1455 aa27.91■■■□□ 2.06
HMGA1-201ENST00000311487 PPRC1Q5VV67 1664 aaKnown RBP27.91■■■□□ 2.06
HMGA1-201ENST00000311487 PREX2Q70Z35 1606 aa27.9■■■□□ 2.06
HMGA1-201ENST00000311487 FAM50AQ14320 339 aaKnown RBP27.9■■■□□ 2.06
HMGA1-201ENST00000311487 HNRNPMP52272 730 aaKnown RBP eCLIP27.86■■■□□ 2.05
HMGA1-201ENST00000311487 FGD6Q6ZV73 1430 aa27.85■■■□□ 2.05
HMGA1-201ENST00000311487 ITSN2Q9NZM3 1697 aa27.85■■■□□ 2.05
HMGA1-201ENST00000311487 AKNAQ7Z591 1439 aa27.82■■■□□ 2.04
HMGA1-201ENST00000311487 ITGAEP38570 1179 aa27.82■■■□□ 2.04
HMGA1-201ENST00000311487 SAMD9LQ8IVG5 1584 aa27.81■■■□□ 2.04
HMGA1-201ENST00000311487 RAPGEF3O95398 923 aa27.8■■■□□ 2.04
HMGA1-201ENST00000311487 CAMSAP2Q08AD1 1489 aa27.79■■■□□ 2.04
HMGA1-201ENST00000311487 TEX14Q8IWB6 1497 aa27.79■■■□□ 2.04
HMGA1-201ENST00000311487 PTPN23Q9H3S7 1636 aa27.78■■■□□ 2.04
HMGA1-201ENST00000311487 ADGRL1O94910 1474 aa27.77■■■□□ 2.04
HMGA1-201ENST00000311487 MIA2Q96PC5 1412 aa27.77■■■□□ 2.04
HMGA1-201ENST00000311487 SCAPERQ9BY12 1400 aa27.77■■■□□ 2.04
HMGA1-201ENST00000311487 ARHGEF12Q9NZN5 1544 aa27.77■■■□□ 2.04
HMGA1-201ENST00000311487 ARAP3Q8WWN8 1544 aa27.76■■■□□ 2.03
HMGA1-201ENST00000311487 AFAP1Q8N556 730 aa27.76■■■□□ 2.03
HMGA1-201ENST00000311487 COL17A1Q9UMD9 1497 aaPredicted RBP27.74■■■□□ 2.03
HMGA1-201ENST00000311487 SYCP2Q9BX26 1530 aa27.74■■■□□ 2.03
HMGA1-201ENST00000311487 NEO1Q92859 1461 aa27.73■■■□□ 2.03
HMGA1-201ENST00000311487 TRAPPC8Q9Y2L5 1435 aa27.71■■■□□ 2.03
HMGA1-201ENST00000311487 ABCC1P33527 1531 aa27.69■■■□□ 2.02
HMGA1-201ENST00000311487 RRBP1Q9P2E9 1410 aaKnown RBP27.69■■■□□ 2.02
HMGA1-201ENST00000311487 CFAP74Q9C0B2 1584 aa27.69■■■□□ 2.02
HMGA1-201ENST00000311487 CHIC2Q9UKJ5 165 aa27.68■■■□□ 2.02
HMGA1-201ENST00000311487 MYT1LQ9UL68 1186 aa27.67■■■□□ 2.02
HMGA1-201ENST00000311487 TCOF1Q13428 1488 aaKnown RBP27.66■■■□□ 2.02
HMGA1-201ENST00000311487 MBD5Q9P267 1494 aa27.66■■■□□ 2.02
HMGA1-201ENST00000311487 DENND4BO75064 1496 aaPredicted RBP27.64■■■□□ 2.01
HMGA1-201ENST00000311487 KIAA1107Q9UPP5 1409 aa27.62■■■□□ 2.01
HMGA1-201ENST00000311487 PLEKHH2Q8IVE3 1493 aa27.61■■■□□ 2.01
HMGA1-201ENST00000311487 KDM6BO15054 1643 aa27.6■■■□□ 2.01
HMGA1-201ENST00000311487 POGZQ7Z3K3 1410 aa27.6■■■□□ 2.01
HMGA1-201ENST00000311487 ABCC5O15440 1437 aa27.59■■■□□ 2.01
HMGA1-201ENST00000311487 PTPRKQ15262 1439 aa27.58■■■□□ 2.01
HMGA1-201ENST00000311487 DAPK1P53355 1430 aa27.57■■■□□ 2
HMGA1-201ENST00000311487 TSPY4P0CV99 314 aa27.57■■■□□ 2
HMGA1-201ENST00000311487 TSPY10P0CW01 314 aa27.57■■■□□ 2
HMGA1-201ENST00000311487 FRMPD1Q5SYB0 1578 aa27.56■■■□□ 2
HMGA1-201ENST00000311487 CCDC141Q6ZP82 1450 aa27.56■■■□□ 2
HMGA1-201ENST00000311487 SPAG9O60271 1321 aaKnown RBP27.55■■■□□ 2
HMGA1-201ENST00000311487 ZNF518AQ6AHZ1 1483 aa27.55■■■□□ 2
HMGA1-201ENST00000311487 RICTORQ6R327 1708 aa27.55■■■□□ 2
HMGA1-201ENST00000311487 TRIM26Q12899 539 aaPredicted RBP27.53■■■□□ 2
HMGA1-201ENST00000311487 DNMT1P26358 1616 aaKnown RBP27.52■■■□□ 2
HMGA1-201ENST00000311487 ARHGEF5Q12774 1597 aa27.51■■□□□ 1.99
HMGA1-201ENST00000311487 RSPH4AQ5TD94 716 aa27.51■■□□□ 1.99
HMGA1-201ENST00000311487 RRP7BPQ9NSQ0 103 aa27.51■■□□□ 1.99
HMGA1-201ENST00000311487 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.5■■□□□ 1.994e-21■□□□□ 9.5
HMGA1-201ENST00000311487 C9orf84Q5VXU9 1444 aa27.49■■□□□ 1.99
HMGA1-201ENST00000311487 YEATS2Q9ULM3 1422 aa27.48■■□□□ 1.99
HMGA1-201ENST00000311487 PCGF6Q9BYE7 350 aa27.46■■□□□ 1.99
HMGA1-201ENST00000311487 KDM5CP41229 1560 aa27.45■■□□□ 1.99
HMGA1-201ENST00000311487 CROCC2H7BZ55 1655 aa27.44■■□□□ 1.98
HMGA1-201ENST00000311487 ATP7AQ04656 1500 aa27.41■■□□□ 1.98
HMGA1-201ENST00000311487 HECW2Q9P2P5 1572 aa27.41■■□□□ 1.98
HMGA1-201ENST00000311487 KIDINS220Q9ULH0 1771 aa27.41■■□□□ 1.98
HMGA1-201ENST00000311487 ZFYVE16Q7Z3T8 1539 aa27.41■■□□□ 1.98
HMGA1-201ENST00000311487 MLH3Q9UHC1 1453 aa27.38■■□□□ 1.97
HMGA1-201ENST00000311487 INO80Q9ULG1 1556 aaPredicted RBP27.37■■□□□ 1.97
HMGA1-201ENST00000311487 ZMYM4Q5VZL5 1548 aa27.37■■□□□ 1.97
HMGA1-201ENST00000311487 NCOA1Q15788 1441 aa27.36■■□□□ 1.97
HMGA1-201ENST00000311487 SHANK2Q9UPX8 1470 aa27.36■■□□□ 1.97
HMGA1-201ENST00000311487 ANKRD30AQ9BXX3 1397 aa27.36■■□□□ 1.97
HMGA1-201ENST00000311487 ABCA6Q8N139 1617 aa27.35■■□□□ 1.97
HMGA1-201ENST00000311487 KIF15Q9NS87 1388 aa27.34■■□□□ 1.97
HMGA1-201ENST00000311487 RTEL1-TNFRSF6BF6WH68 1400 aa27.34■■□□□ 1.97
HMGA1-201ENST00000311487 MAST1Q9Y2H9 1570 aa27.32■■□□□ 1.96
HMGA1-201ENST00000311487 DIP2CQ9Y2E4 1556 aa27.31■■□□□ 1.96
HMGA1-201ENST00000311487 MAGI2Q86UL8 1455 aa27.29■■□□□ 1.96
HMGA1-201ENST00000311487 ADGBQ8N7X0 1667 aa27.29■■□□□ 1.96
HMGA1-201ENST00000311487 ARID4BQ4LE39 1312 aaPredicted RBP27.28■■□□□ 1.96
HMGA1-201ENST00000311487 ADGRL2O95490 1459 aa27.28■■□□□ 1.96
HMGA1-201ENST00000311487 ATP10AO60312 1499 aa27.26■■□□□ 1.96
HMGA1-201ENST00000311487 ROCK1Q13464 1354 aa27.26■■□□□ 1.95
HMGA1-201ENST00000311487 MLECQ14165 292 aa27.26■■□□□ 1.95
HMGA1-201ENST00000311487 ARHGEF40Q8TER5 1519 aa27.26■■□□□ 1.95
HMGA1-201ENST00000311487 A2MP01023 1474 aa27.25■■□□□ 1.95
HMGA1-201ENST00000311487 SIGLEC1Q9BZZ2 1709 aa27.24■■□□□ 1.95
HMGA1-201ENST00000311487 PLXNC1O60486 1568 aa27.24■■□□□ 1.95
HMGA1-201ENST00000311487 NAIPQ13075 1403 aa27.24■■□□□ 1.95
HMGA1-201ENST00000311487 KIF3BO15066 747 aa27.23■■□□□ 1.95
HMGA1-201ENST00000311487 DHX29Q7Z478 1369 aaKnown RBP27.23■■□□□ 1.95
HMGA1-201ENST00000311487 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.2■■□□□ 1.952e-6■■□□□ 14.5
HMGA1-201ENST00000311487 HFM1A2PYH4 1435 aa27.2■■□□□ 1.95
HMGA1-201ENST00000311487 ANKRD50Q9ULJ7 1429 aa27.2■■□□□ 1.95
HMGA1-201ENST00000311487 GGT6Q6P531 493 aa27.2■■□□□ 1.94
HMGA1-201ENST00000311487 DUOX2Q9NRD8 1548 aa27.18■■□□□ 1.94
HMGA1-201ENST00000311487 SETD5Q9C0A6 1442 aa27.15■■□□□ 1.94
HMGA1-201ENST00000311487 RAB3GAP2Q9H2M9 1393 aa27.13■■□□□ 1.93
HMGA1-201ENST00000311487 TRIM52Q96A61 297 aa27.11■■□□□ 1.93
HMGA1-201ENST00000311487 GCC2Q8IWJ2 1684 aa27.11■■□□□ 1.93
HMGA1-201ENST00000311487 ERBINQ96RT1 1412 aa27.11■■□□□ 1.93
HMGA1-201ENST00000311487 REREQ9P2R6 1566 aa27.04■■□□□ 1.92
HMGA1-201ENST00000311487 PLPPR3Q6T4P5 718 aa27.03■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms