RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 GNL2Q13823 731 aaKnown RBP16.16■□□□□ 0.18
USP38-201ENST00000307017 PATL2C9JE40 543 aaKnown RBP16.15■□□□□ 0.18
USP38-201ENST00000307017 STK26Q9P289 416 aa16.15■□□□□ 0.18
USP38-201ENST00000307017 NOC3LQ8WTT2 800 aaKnown RBP16.14■□□□□ 0.17
USP38-201ENST00000307017 CCDC146Q8IYE0 955 aa16.14■□□□□ 0.17
USP38-201ENST00000307017 CHMP7Q8WUX9 453 aaPredicted RBP16.13■□□□□ 0.17
USP38-201ENST00000307017 WWC1Q8IX03 1113 aa16.12■□□□□ 0.17
USP38-201ENST00000307017 CLIP1P30622 1438 aa16.11■□□□□ 0.17
USP38-201ENST00000307017 DCAF11Q8TEB1 546 aa16.11■□□□□ 0.17
USP38-201ENST00000307017 TSHZ2Q9NRE2 1034 aa16.11■□□□□ 0.17
USP38-201ENST00000307017 TNNT3P45378 269 aaPredicted RBP16.1■□□□□ 0.17
USP38-201ENST00000307017 ITPRIPQ8IWB1 547 aa16.1■□□□□ 0.17
USP38-201ENST00000307017 NUTM2DQ5VT03 806 aaPredicted RBP16.09■□□□□ 0.17
USP38-201ENST00000307017 CLUAP1Q96AJ1 413 aa16.09■□□□□ 0.17
USP38-201ENST00000307017 L1TD1Q5T7N2 865 aaKnown RBP16.07■□□□□ 0.16
USP38-201ENST00000307017 PNNQ9H307 717 aaKnown RBP16.06■□□□□ 0.16
USP38-201ENST00000307017 SRPK2P78362 688 aaKnown RBP16.06■□□□□ 0.16
USP38-201ENST00000307017 CHMP3Q9Y3E7 222 aa16.06■□□□□ 0.16
USP38-201ENST00000307017 VSIG10Q8N0Z9 540 aa16.04■□□□□ 0.16
USP38-201ENST00000307017 PAK3O75914 559 aaPredicted RBP16.04■□□□□ 0.16
USP38-201ENST00000307017 TRIM6-TRIM34B2RNG4 842 aa16.04■□□□□ 0.16
USP38-201ENST00000307017 CEP162Q5TB80 1403 aa16.03■□□□□ 0.16
USP38-201ENST00000307017 PLIN1O60240 522 aa16.03■□□□□ 0.16
USP38-201ENST00000307017 A0A0U1RQG5 324 aaPredicted RBP16.02■□□□□ 0.16
USP38-201ENST00000307017 FBXW7Q969H0 707 aa16.02■□□□□ 0.15
USP38-201ENST00000307017 HSPA5P11021 654 aaKnown RBP16.01■□□□□ 0.15
USP38-201ENST00000307017 NUDCQ9Y266 331 aa16.01■□□□□ 0.15
USP38-201ENST00000307017 CCDC180Q9P1Z9 1646 aa16■□□□□ 0.15
USP38-201ENST00000307017 SLC4A10Q6U841 1118 aa16■□□□□ 0.15
USP38-201ENST00000307017 MORC1Q86VD1 984 aa15.99■□□□□ 0.15
USP38-201ENST00000307017 GOLGA6L3A6NEY3 463 aa15.99■□□□□ 0.15
USP38-201ENST00000307017 CFDP1Q9UEE9 299 aaPredicted RBP15.99■□□□□ 0.15
USP38-201ENST00000307017 CCAR2Q8N163 923 aaKnown RBP15.98■□□□□ 0.15
USP38-201ENST00000307017 NUTM2FA1L443 756 aa15.98■□□□□ 0.15
USP38-201ENST00000307017 MCCP23508 829 aa15.98■□□□□ 0.15
USP38-201ENST00000307017 NRDCO43847 1150 aa15.98■□□□□ 0.15
USP38-201ENST00000307017 RRP7AQ9Y3A4 280 aaKnown RBP15.98■□□□□ 0.15
USP38-201ENST00000307017 KIAA2012Q0VF49 1180 aa15.97■□□□□ 0.15
USP38-201ENST00000307017 BCL2L13Q9BXK5 485 aa15.97■□□□□ 0.15
USP38-201ENST00000307017 PES1O00541 588 aaKnown RBP15.96■□□□□ 0.15
USP38-201ENST00000307017 ZNF592Q92610 1267 aa15.95■□□□□ 0.14
USP38-201ENST00000307017 PTMSP20962 102 aa15.95■□□□□ 0.14
USP38-201ENST00000307017 FOSBP53539 338 aa15.95■□□□□ 0.14
USP38-201ENST00000307017 RCAN3Q9UKA8 241 aa15.95■□□□□ 0.14
USP38-201ENST00000307017 KIAA1211Q6ZU35 1233 aa15.94■□□□□ 0.14
USP38-201ENST00000307017 KDM4AO75164 1064 aa15.92■□□□□ 0.14
USP38-201ENST00000307017 HSP90AA2PQ14568 343 aaPredicted RBP15.92■□□□□ 0.14
USP38-201ENST00000307017 DHX37Q8IY37 1157 aaKnown RBP15.92■□□□□ 0.14
USP38-201ENST00000307017 PLEKHD1A6NEE1 506 aa15.91■□□□□ 0.14
USP38-201ENST00000307017 VPS53Q5VIR6 699 aa15.91■□□□□ 0.14
USP38-201ENST00000307017 RTF1Q92541 710 aaKnown RBP15.91■□□□□ 0.14
USP38-201ENST00000307017 GBP4Q96PP9 640 aa15.91■□□□□ 0.14
USP38-201ENST00000307017 U2AF1L5P0DN76 240 aaPredicted RBP15.91■□□□□ 0.14
USP38-201ENST00000307017 U2AF1Q01081 240 aaKnown RBP eCLIP15.91■□□□□ 0.14
USP38-201ENST00000307017 LTV1Q96GA3 475 aaPredicted RBP15.91■□□□□ 0.14
USP38-201ENST00000307017 ELL2O00472 640 aaPredicted RBP15.89■□□□□ 0.13
USP38-201ENST00000307017 RASSF8Q8NHQ8 419 aa15.89■□□□□ 0.13
USP38-201ENST00000307017 TMF1P82094 1093 aa15.88■□□□□ 0.13
USP38-201ENST00000307017 IPO9Q96P70 1041 aaKnown RBP15.88■□□□□ 0.13
USP38-201ENST00000307017 TOMM22Q9NS69 142 aa15.88■□□□□ 0.13
USP38-201ENST00000307017 NECTIN2Q92692 538 aa15.87■□□□□ 0.13
USP38-201ENST00000307017 ZNF428Q96B54 188 aa15.87■□□□□ 0.13
USP38-201ENST00000307017 EIF4G1Q04637 1599 aaKnown RBP15.86■□□□□ 0.13
USP38-201ENST00000307017 SMC4Q9NTJ3 1288 aa15.86■□□□□ 0.13
USP38-201ENST00000307017 TCERG1O14776 1098 aaKnown RBP15.86■□□□□ 0.13
USP38-201ENST00000307017 CDCA8Q53HL2 280 aa15.86■□□□□ 0.13
USP38-201ENST00000307017 TAF7LQ5H9L4 462 aa15.86■□□□□ 0.13
USP38-201ENST00000307017 RILPL2Q969X0 211 aa15.86■□□□□ 0.13
USP38-201ENST00000307017 NGEFQ8N5V2 710 aa15.85■□□□□ 0.13
USP38-201ENST00000307017 ZNF771Q7L3S4 317 aaPredicted RBP15.85■□□□□ 0.13
USP38-201ENST00000307017 CALD1Q05682 793 aaKnown RBP15.84■□□□□ 0.13
USP38-201ENST00000307017 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.84■□□□□ 0.13
USP38-201ENST00000307017 RAD21O60216 631 aa15.84■□□□□ 0.13
USP38-201ENST00000307017 GORABQ5T7V8 394 aa15.84■□□□□ 0.13
USP38-201ENST00000307017 FAM13BQ9NYF5 915 aa15.84■□□□□ 0.13
USP38-201ENST00000307017 CSB-PGBD3P0DP91 1061 aa15.83■□□□□ 0.12
USP38-201ENST00000307017 GGT6Q6P531 493 aa15.82■□□□□ 0.12
USP38-201ENST00000307017 GOLGA6L1Q8N7Z2 621 aa15.82■□□□□ 0.12
USP38-201ENST00000307017 MAPK8IP2Q13387 824 aaPredicted RBP15.81■□□□□ 0.12
USP38-201ENST00000307017 GOLGA3Q08378 1498 aa15.79■□□□□ 0.12
USP38-201ENST00000307017 SKIDA1Q1XH10 827 aa15.79■□□□□ 0.12
USP38-201ENST00000307017 TRHP20396 242 aaPredicted RBP15.78■□□□□ 0.12
USP38-201ENST00000307017 EXOC6Q8TAG9 804 aa15.77■□□□□ 0.12
USP38-201ENST00000307017 MCTP1Q6DN14 999 aa15.77■□□□□ 0.11
USP38-201ENST00000307017 ROCK2O75116 1388 aaKnown RBP15.77■□□□□ 0.11
USP38-201ENST00000307017 RWDD1Q9H446 243 aaPredicted RBP15.76■□□□□ 0.11
USP38-201ENST00000307017 KTN1Q86UP2 1357 aaKnown RBP15.76■□□□□ 0.11
USP38-201ENST00000307017 MS4A1P11836 297 aa15.75■□□□□ 0.11
USP38-201ENST00000307017 KANK4Q5T7N3 995 aaPredicted RBP15.75■□□□□ 0.11
USP38-201ENST00000307017 CRBNQ96SW2 442 aa15.75■□□□□ 0.11
USP38-201ENST00000307017 ANKRD45Q5TZF3 282 aa15.75■□□□□ 0.11
USP38-201ENST00000307017 SAMD1Q6SPF0 538 aaPredicted RBP15.75■□□□□ 0.11
USP38-201ENST00000307017 TPM4P67936 248 aa15.74■□□□□ 0.11
USP38-201ENST00000307017 PKD2Q13563 968 aa15.74■□□□□ 0.11
USP38-201ENST00000307017 RSF1Q96T23 1441 aaPredicted RBP15.74■□□□□ 0.11
USP38-201ENST00000307017 MPNDQ8N594 471 aa15.73■□□□□ 0.11
USP38-201ENST00000307017 DDX49Q9Y6V7 483 aaKnown RBP15.73■□□□□ 0.11
USP38-201ENST00000307017 TPD52L1Q16890 204 aaPredicted RBP15.73■□□□□ 0.11
USP38-201ENST00000307017 SF3A1Q15459 793 aaKnown RBP15.73■□□□□ 0.11
USP38-201ENST00000307017 H3BQV1 296 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms