RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 NEUROD1Q13562 356 aa9.54□□□□□ -0.88
USP47-201ENST00000305481 CFDP1Q9UEE9 299 aaPredicted RBP9.54□□□□□ -0.88
USP47-201ENST00000305481 CAMSAP2Q08AD1 1489 aa9.54□□□□□ -0.88
USP47-201ENST00000305481 ITSN2Q9NZM3 1697 aa9.53□□□□□ -0.88
USP47-201ENST00000305481 ROCK1Q13464 1354 aa9.53□□□□□ -0.88
USP47-201ENST00000305481 DENND4BO75064 1496 aaPredicted RBP9.53□□□□□ -0.88
USP47-201ENST00000305481 CDC42BPAQ5VT25 1732 aa9.51□□□□□ -0.89
USP47-201ENST00000305481 ZNF777Q9ULD5 760 aaPredicted RBP9.5□□□□□ -0.89
USP47-201ENST00000305481 TIMELESSQ9UNS1 1208 aa9.5□□□□□ -0.89
USP47-201ENST00000305481 ABCC2Q92887 1545 aa9.49□□□□□ -0.89
USP47-201ENST00000305481 NCOA1Q15788 1441 aa9.48□□□□□ -0.89
USP47-201ENST00000305481 PPP1R15AO75807 674 aaPredicted RBP9.48□□□□□ -0.89
USP47-201ENST00000305481 TRIM52Q96A61 297 aa9.48□□□□□ -0.89
USP47-201ENST00000305481 MPHOSPH9Q99550 1183 aa9.47□□□□□ -0.89
USP47-201ENST00000305481 CROCC2H7BZ55 1655 aa9.47□□□□□ -0.89
USP47-201ENST00000305481 ADGRL2O95490 1459 aa9.46□□□□□ -0.89
USP47-201ENST00000305481 MIER1Q8N108 512 aa9.46□□□□□ -0.9
USP47-201ENST00000305481 ADGBQ8N7X0 1667 aa9.45□□□□□ -0.9
USP47-201ENST00000305481 CDC42BPBQ9Y5S2 1711 aa9.45□□□□□ -0.9
USP47-201ENST00000305481 KDM5BQ9UGL1 1544 aa9.45□□□□□ -0.9
USP47-201ENST00000305481 UHRF1BP1LA0JNW5 1464 aa9.45□□□□□ -0.9
USP47-201ENST00000305481 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.44□□□□□ -0.9
USP47-201ENST00000305481 MBD5Q9P267 1494 aa9.44□□□□□ -0.9
USP47-201ENST00000305481 PREX2Q70Z35 1606 aa9.44□□□□□ -0.9
USP47-201ENST00000305481 TTC37Q6PGP7 1564 aa9.44□□□□□ -0.9
USP47-201ENST00000305481 FOXD1Q16676 465 aa9.44□□□□□ -0.9
USP47-201ENST00000305481 SAMD9LQ8IVG5 1584 aa9.44□□□□□ -0.9
USP47-201ENST00000305481 TONSLQ96HA7 1378 aa9.44□□□□□ -0.9
USP47-201ENST00000305481 HNRNPMP52272 730 aaKnown RBP eCLIP9.43□□□□□ -0.9
USP47-201ENST00000305481 ZCCHC11Q5TAX3 1644 aaKnown RBP9.43□□□□□ -0.9
USP47-201ENST00000305481 SHANK2Q9UPX8 1470 aa9.43□□□□□ -0.9
USP47-201ENST00000305481 ANKRD30AQ9BXX3 1397 aa9.43□□□□□ -0.9
USP47-201ENST00000305481 C9orf84Q5VXU9 1444 aa9.42□□□□□ -0.9
USP47-201ENST00000305481 ARHGEF5Q12774 1597 aa9.42□□□□□ -0.9
USP47-201ENST00000305481 PZPP20742 1482 aa9.42□□□□□ -0.9
USP47-201ENST00000305481 ACIN1Q9UKV3 1341 aaKnown RBP9.41□□□□□ -0.9
USP47-201ENST00000305481 ANKRD30BQ9BXX2 1392 aa9.41□□□□□ -0.9
USP47-201ENST00000305481 KCNH8Q96L42 1107 aa9.4□□□□□ -0.9
USP47-201ENST00000305481 ANKRD50Q9ULJ7 1429 aa9.4□□□□□ -0.9
USP47-201ENST00000305481 SLC4A1APQ9BWU0 796 aaKnown RBP9.4□□□□□ -0.91
USP47-201ENST00000305481 TSPY4P0CV99 314 aa9.39□□□□□ -0.91
USP47-201ENST00000305481 TSPY10P0CW01 314 aa9.39□□□□□ -0.91
USP47-201ENST00000305481 ARHGAP5Q13017 1502 aa9.39□□□□□ -0.91
USP47-201ENST00000305481 CCDC141Q6ZP82 1450 aa9.39□□□□□ -0.91
USP47-201ENST00000305481 SYCP2Q9BX26 1530 aa9.38□□□□□ -0.91
USP47-201ENST00000305481 MYO5CQ9NQX4 1742 aa9.38□□□□□ -0.91
USP47-201ENST00000305481 RPRD2Q5VT52 1461 aaKnown RBP9.37□□□□□ -0.91
USP47-201ENST00000305481 HIRIP3Q9BW71 556 aaPredicted RBP9.37□□□□□ -0.91
USP47-201ENST00000305481 PLCH2O75038 1416 aa9.37□□□□□ -0.91
USP47-201ENST00000305481 PELP1Q8IZL8 1130 aaKnown RBP9.37□□□□□ -0.91
USP47-201ENST00000305481 KIF15Q9NS87 1388 aa9.37□□□□□ -0.91
USP47-201ENST00000305481 ARHGEF12Q9NZN5 1544 aa9.37□□□□□ -0.91
USP47-201ENST00000305481 RSPH4AQ5TD94 716 aa9.37□□□□□ -0.91
USP47-201ENST00000305481 KIAA1107Q9UPP5 1409 aa9.36□□□□□ -0.91
USP47-201ENST00000305481 OSCARQ8IYS5 282 aa9.36□□□□□ -0.91
USP47-201ENST00000305481 L3MBTL2Q969R5 705 aa9.36□□□□□ -0.91
USP47-201ENST00000305481 TEX14Q8IWB6 1497 aa9.35□□□□□ -0.91
USP47-201ENST00000305481 MAST1Q9Y2H9 1570 aa9.35□□□□□ -0.91
USP47-201ENST00000305481 PKD2Q13563 968 aa9.34□□□□□ -0.91
USP47-201ENST00000305481 NUP155O75694 1391 aa9.34□□□□□ -0.91
USP47-201ENST00000305481 KDM5DQ9BY66 1539 aa9.34□□□□□ -0.91
USP47-201ENST00000305481 PLEKHH2Q8IVE3 1493 aa9.33□□□□□ -0.92
USP47-201ENST00000305481 WDR7Q9Y4E6 1490 aa9.33□□□□□ -0.92
USP47-201ENST00000305481 EFCAB2Q5VUJ9 269 aa9.33□□□□□ -0.92
USP47-201ENST00000305481 DDX10Q13206 875 aaKnown RBP9.32□□□□□ -0.92
USP47-201ENST00000305481 ABCC1P33527 1531 aa9.32□□□□□ -0.92
USP47-201ENST00000305481 NBPF8Q3BBV2 869 aa9.31□□□□□ -0.92
USP47-201ENST00000305481 YTHDC1Q96MU7 727 aaKnown RBP9.31□□□□□ -0.92
USP47-201ENST00000305481 TRAPPC8Q9Y2L5 1435 aa9.31□□□□□ -0.92
USP47-201ENST00000305481 PLXNC1O60486 1568 aa9.31□□□□□ -0.92
USP47-201ENST00000305481 ARAP3Q8WWN8 1544 aa9.3□□□□□ -0.92
USP47-201ENST00000305481 ASXL2Q76L83 1435 aa9.3□□□□□ -0.92
USP47-201ENST00000305481 SCAF1Q9H7N4 1312 aaKnown RBP9.3□□□□□ -0.92
USP47-201ENST00000305481 ABCA9Q8IUA7 1624 aa9.29□□□□□ -0.92
USP47-201ENST00000305481 FAM135AQ9P2D6 1515 aa9.29□□□□□ -0.92
USP47-201ENST00000305481 CENPBP07199 599 aaPredicted RBP9.29□□□□□ -0.92
USP47-201ENST00000305481 HSPA5P11021 654 aaKnown RBP9.28□□□□□ -0.92
USP47-201ENST00000305481 UNC13BO14795 1591 aa9.28□□□□□ -0.92
USP47-201ENST00000305481 AFAP1Q8N556 730 aa9.28□□□□□ -0.92
USP47-201ENST00000305481 DUOX2Q9NRD8 1548 aa9.27□□□□□ -0.92
USP47-201ENST00000305481 FANCAO15360 1455 aa9.27□□□□□ -0.93
USP47-201ENST00000305481 ERBINQ96RT1 1412 aa9.26□□□□□ -0.93
USP47-201ENST00000305481 EIF4G2P78344 907 aaKnown RBP eCLIP9.25□□□□□ -0.93
USP47-201ENST00000305481 ZFYVE16Q7Z3T8 1539 aa9.25□□□□□ -0.93
USP47-201ENST00000305481 WASHC2AQ641Q2 1341 aa9.25□□□□□ -0.93
USP47-201ENST00000305481 MAGI2Q86UL8 1455 aa9.25□□□□□ -0.93
USP47-201ENST00000305481 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.25□□□□□ -0.93
USP47-201ENST00000305481 RTEL1-TNFRSF6BF6WH68 1400 aa9.25□□□□□ -0.93
USP47-201ENST00000305481 PLA2R1Q13018 1463 aa9.25□□□□□ -0.93
USP47-201ENST00000305481 SPAG9O60271 1321 aaKnown RBP9.25□□□□□ -0.93
USP47-201ENST00000305481 SPATA31E1Q6ZUB1 1445 aa9.24□□□□□ -0.93
USP47-201ENST00000305481 IQGAP3Q86VI3 1631 aa9.24□□□□□ -0.93
USP47-201ENST00000305481 C11orf95C9JLR9 678 aaPredicted RBP9.23□□□□□ -0.93
USP47-201ENST00000305481 NPM1P06748 294 aaKnown RBP eCLIP9.23□□□□□ -0.93
USP47-201ENST00000305481 ADGRL1O94910 1474 aa9.23□□□□□ -0.93
USP47-201ENST00000305481 SCAPERQ9BY12 1400 aa9.23□□□□□ -0.93
USP47-201ENST00000305481 UHRF1BP1Q6BDS2 1440 aa9.22□□□□□ -0.93
USP47-201ENST00000305481 INO80Q9ULG1 1556 aaPredicted RBP9.22□□□□□ -0.93
USP47-201ENST00000305481 ATP7AQ04656 1500 aa9.21□□□□□ -0.93
USP47-201ENST00000305481 ZNF326Q5BKZ1 582 aaKnown RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms