RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 GOLGA6L6A8MZA4 724 aa16.36■□□□□ 0.21
COL3A1-201ENST00000304636 U2SURPO15042 1029 aaKnown RBP16.36■□□□□ 0.21
COL3A1-201ENST00000304636 PKD2Q13563 968 aa16.35■□□□□ 0.21
COL3A1-201ENST00000304636 RWDD1Q9H446 243 aaPredicted RBP16.34■□□□□ 0.21
COL3A1-201ENST00000304636 CDK11BP21127 795 aaKnown RBP16.34■□□□□ 0.21
COL3A1-201ENST00000304636 SLKQ9H2G2 1235 aaPredicted RBP16.34■□□□□ 0.21
COL3A1-201ENST00000304636 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.34■□□□□ 0.21
COL3A1-201ENST00000304636 FOXD1Q16676 465 aa16.33■□□□□ 0.21
COL3A1-201ENST00000304636 GOLGA6L3A6NEY3 463 aa16.33■□□□□ 0.2
COL3A1-201ENST00000304636 ARID4BQ4LE39 1312 aaPredicted RBP16.32■□□□□ 0.2
COL3A1-201ENST00000304636 MORC1Q86VD1 984 aa16.32■□□□□ 0.2
COL3A1-201ENST00000304636 SENP3Q9H4L4 574 aaPredicted RBP16.32■□□□□ 0.2
COL3A1-201ENST00000304636 MCCP23508 829 aa16.31■□□□□ 0.2
COL3A1-201ENST00000304636 ROCK2O75116 1388 aaKnown RBP16.31■□□□□ 0.2
COL3A1-201ENST00000304636 NRDCO43847 1150 aa16.31■□□□□ 0.2
COL3A1-201ENST00000304636 PMFBP1Q8TBY8 1022 aa16.31■□□□□ 0.2
COL3A1-201ENST00000304636 GZF1Q9H116 711 aaPredicted RBP16.3■□□□□ 0.2
COL3A1-201ENST00000304636 IPO8O15397 1037 aaKnown RBP16.3■□□□□ 0.2
COL3A1-201ENST00000304636 PLPPR3Q6T4P5 718 aa16.29■□□□□ 0.2
COL3A1-201ENST00000304636 L3MBTL2Q969R5 705 aa16.29■□□□□ 0.2
COL3A1-201ENST00000304636 POGKQ9P215 609 aa16.29■□□□□ 0.2
COL3A1-201ENST00000304636 EIF4G1Q04637 1599 aaKnown RBP16.29■□□□□ 0.2
COL3A1-201ENST00000304636 NLRP13Q86W25 1043 aa16.28■□□□□ 0.2
COL3A1-201ENST00000304636 ZBED9Q6R2W3 1325 aa16.27■□□□□ 0.2
COL3A1-201ENST00000304636 GOLGA6L4A6NEF3 574 aa16.27■□□□□ 0.2
COL3A1-201ENST00000304636 TOP2AP11388 1531 aaKnown RBP16.27■□□□□ 0.19
COL3A1-201ENST00000304636 GOLGA2Q08379 1002 aa16.26■□□□□ 0.19
COL3A1-201ENST00000304636 C14orf37Q86TY3 774 aa16.26■□□□□ 0.19
COL3A1-201ENST00000304636 HAP1P54257 671 aaPredicted RBP16.25■□□□□ 0.19
COL3A1-201ENST00000304636 ZBTB7CA1YPR0 619 aa16.25■□□□□ 0.19
COL3A1-201ENST00000304636 PDE4AP27815 886 aa16.25■□□□□ 0.19
COL3A1-201ENST00000304636 RSPH6AQ9H0K4 717 aa16.25■□□□□ 0.19
COL3A1-201ENST00000304636 KANK1Q14678 1352 aa16.24■□□□□ 0.19
COL3A1-201ENST00000304636 PHLDB1Q86UU1 1377 aa16.24■□□□□ 0.19
COL3A1-201ENST00000304636 KCNJ4P48050 445 aa16.24■□□□□ 0.19
COL3A1-201ENST00000304636 GSE1Q14687 1217 aa16.24■□□□□ 0.19
COL3A1-201ENST00000304636 OS9Q13438 667 aaPredicted RBP16.23■□□□□ 0.19
COL3A1-201ENST00000304636 KIAA2012Q0VF49 1180 aa16.23■□□□□ 0.19
COL3A1-201ENST00000304636 PRKRIP1Q9H875 184 aaPredicted RBP16.23■□□□□ 0.19
COL3A1-201ENST00000304636 KIF15Q9NS87 1388 aa16.23■□□□□ 0.19
COL3A1-201ENST00000304636 RAPGEF2Q9Y4G8 1499 aa16.22■□□□□ 0.19
COL3A1-201ENST00000304636 FGD1P98174 961 aa16.22■□□□□ 0.19
COL3A1-201ENST00000304636 WIZO95785 1651 aa16.21■□□□□ 0.19
COL3A1-201ENST00000304636 MYBBP1AQ9BQG0 1328 aaKnown RBP16.21■□□□□ 0.19
COL3A1-201ENST00000304636 CENPQQ7L2Z9 268 aaPredicted RBP16.21■□□□□ 0.19
COL3A1-201ENST00000304636 ITPRIPQ8IWB1 547 aa16.21■□□□□ 0.19
COL3A1-201ENST00000304636 NUP155O75694 1391 aa16.21■□□□□ 0.18
COL3A1-201ENST00000304636 ANKRD30AQ9BXX3 1397 aa16.2■□□□□ 0.18
COL3A1-201ENST00000304636 MFAP1P55081 439 aaKnown RBP16.2■□□□□ 0.18
COL3A1-201ENST00000304636 DRC7Q8IY82 874 aa16.2■□□□□ 0.18
COL3A1-201ENST00000304636 FAM161AQ3B820 660 aa16.2■□□□□ 0.18
COL3A1-201ENST00000304636 SYAP1Q96A49 352 aaPredicted RBP16.2■□□□□ 0.18
COL3A1-201ENST00000304636 RRP1P56182 461 aaKnown RBP16.19■□□□□ 0.18
COL3A1-201ENST00000304636 CALD1Q05682 793 aaKnown RBP16.17■□□□□ 0.18
COL3A1-201ENST00000304636 CENPJQ9HC77 1338 aaPredicted RBP16.17■□□□□ 0.18
COL3A1-201ENST00000304636 SMARCA2P51531 1590 aa16.16■□□□□ 0.18
COL3A1-201ENST00000304636 DDX11L8A8MPP1 907 aa16.16■□□□□ 0.18
COL3A1-201ENST00000304636 U2AF1L5P0DN76 240 aaPredicted RBP16.16■□□□□ 0.18
COL3A1-201ENST00000304636 SRPK2P78362 688 aaKnown RBP16.16■□□□□ 0.18
COL3A1-201ENST00000304636 U2AF1Q01081 240 aaKnown RBP eCLIP16.16■□□□□ 0.18
COL3A1-201ENST00000304636 EXOC6Q8TAG9 804 aa16.15■□□□□ 0.18
COL3A1-201ENST00000304636 EIF3AQ14152 1382 aaKnown RBP16.15■□□□□ 0.18
COL3A1-201ENST00000304636 HSP90AA2PQ14568 343 aaPredicted RBP16.14■□□□□ 0.17
COL3A1-201ENST00000304636 SMC4Q9NTJ3 1288 aa16.12■□□□□ 0.17
COL3A1-201ENST00000304636 FHOD3Q2V2M9 1422 aa16.11■□□□□ 0.17
COL3A1-201ENST00000304636 KIAA1211Q6ZU35 1233 aa16.11■□□□□ 0.17
COL3A1-201ENST00000304636 NAP1L2Q9ULW6 460 aaPredicted RBP16.11■□□□□ 0.17
COL3A1-201ENST00000304636 PLEKHG5O94827 1062 aa16.1■□□□□ 0.17
COL3A1-201ENST00000304636 RUSC2Q8N2Y8 1516 aa16.1■□□□□ 0.17
COL3A1-201ENST00000304636 SLC4A3P48751 1232 aa16.1■□□□□ 0.17
COL3A1-201ENST00000304636 HDGFL2Q7Z4V5 671 aaPredicted RBP16.09■□□□□ 0.17
COL3A1-201ENST00000304636 CCDC146Q8IYE0 955 aa16.09■□□□□ 0.17
COL3A1-201ENST00000304636 APBB1O00213 710 aa16.09■□□□□ 0.17
COL3A1-201ENST00000304636 CRBNQ96SW2 442 aa16.08■□□□□ 0.17
COL3A1-201ENST00000304636 CCDC18Q5T9S5 1454 aa16.08■□□□□ 0.17
COL3A1-201ENST00000304636 SKOR2Q2VWA4 1001 aaPredicted RBP16.08■□□□□ 0.16
COL3A1-201ENST00000304636 CLUAP1Q96AJ1 413 aa16.08■□□□□ 0.16
COL3A1-201ENST00000304636 RTF1Q92541 710 aaKnown RBP16.07■□□□□ 0.16
COL3A1-201ENST00000304636 PLIN1O60240 522 aa16.07■□□□□ 0.16
COL3A1-201ENST00000304636 HTATSF1O43719 755 aaKnown RBP16.06■□□□□ 0.16
COL3A1-201ENST00000304636 ARID3AQ99856 593 aa16.06■□□□□ 0.16
COL3A1-201ENST00000304636 ST20-MTHFSA0A0A6YYL1 179 aa16.06■□□□□ 0.16
COL3A1-201ENST00000304636 AMER1Q5JTC6 1135 aaPredicted RBP16.06■□□□□ 0.16
COL3A1-201ENST00000304636 CARMIL2Q6F5E8 1435 aa16.05■□□□□ 0.16
COL3A1-201ENST00000304636 CGNL1Q0VF96 1302 aa16.05■□□□□ 0.16
COL3A1-201ENST00000304636 PHF14O94880 888 aa16.04■□□□□ 0.16
COL3A1-201ENST00000304636 SAFB2Q14151 953 aaKnown RBP eCLIP16.04■□□□□ 0.16
COL3A1-201ENST00000304636 CSPP1Q1MSJ5 1256 aa16.04■□□□□ 0.16
COL3A1-201ENST00000304636 E9PSI1 815 aa16.04■□□□□ 0.16
COL3A1-201ENST00000304636 USP47Q96K76 1375 aa16.04■□□□□ 0.16
COL3A1-201ENST00000304636 ST18O60284 1047 aa16.04■□□□□ 0.16
COL3A1-201ENST00000304636 TAOK2Q9UL54 1235 aa16.03■□□□□ 0.16
COL3A1-201ENST00000304636 A0A0G2JS52 829 aa16.03■□□□□ 0.16
COL3A1-201ENST00000304636 PANK3Q9H999 370 aa16.03■□□□□ 0.16
COL3A1-201ENST00000304636 FOXD4L1Q9NU39 408 aa16.03■□□□□ 0.16
COL3A1-201ENST00000304636 HMMRO75330 724 aa16.02■□□□□ 0.16
COL3A1-201ENST00000304636 RSPH4AQ5TD94 716 aa16■□□□□ 0.15
COL3A1-201ENST00000304636 CNTLNQ9NXG0 1405 aa16■□□□□ 0.15
COL3A1-201ENST00000304636 DDX49Q9Y6V7 483 aaKnown RBP15.99■□□□□ 0.15
COL3A1-201ENST00000304636 CCDC7Q96M83 1385 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms