RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 C14orf37Q86TY3 774 aa9.66□□□□□ -0.86
SF3B3-201ENST00000302516 RWDD1Q9H446 243 aaPredicted RBP9.65□□□□□ -0.86
SF3B3-201ENST00000302516 RSPH6AQ9H0K4 717 aa9.65□□□□□ -0.86
SF3B3-201ENST00000302516 PMFBP1Q8TBY8 1022 aa9.65□□□□□ -0.87
SF3B3-201ENST00000302516 TPM4P67936 248 aa9.64□□□□□ -0.87
SF3B3-201ENST00000302516 IPO9Q96P70 1041 aaKnown RBP9.64□□□□□ -0.87
SF3B3-201ENST00000302516 GOLGA6L3A6NEY3 463 aa9.64□□□□□ -0.87
SF3B3-201ENST00000302516 RGL3Q3MIN7 710 aa9.64□□□□□ -0.87
SF3B3-201ENST00000302516 KIAA1211Q6ZU35 1233 aa9.64□□□□□ -0.87
SF3B3-201ENST00000302516 POGKQ9P215 609 aa9.63□□□□□ -0.87
SF3B3-201ENST00000302516 CC2D1BQ5T0F9 858 aaKnown RBP9.63□□□□□ -0.87
SF3B3-201ENST00000302516 DDX11L8A8MPP1 907 aa9.63□□□□□ -0.87
SF3B3-201ENST00000302516 ABCC8Q09428 1581 aa9.63□□□□□ -0.87
SF3B3-201ENST00000302516 PDE3BQ13370 1112 aa9.63□□□□□ -0.87
SF3B3-201ENST00000302516 CCDC34Q96HJ3 373 aa9.63□□□□□ -0.87
SF3B3-201ENST00000302516 RCAN3Q9UKA8 241 aa9.63□□□□□ -0.87
SF3B3-201ENST00000302516 CUX2O14529 1486 aa9.62□□□□□ -0.87
SF3B3-201ENST00000302516 CCDC18Q5T9S5 1454 aa9.61□□□□□ -0.87
SF3B3-201ENST00000302516 GPATCH3Q96I76 525 aa9.61□□□□□ -0.87
SF3B3-201ENST00000302516 GNL2Q13823 731 aaKnown RBP9.61□□□□□ -0.87
SF3B3-201ENST00000302516 GOLGA6L1Q8N7Z2 621 aa9.61□□□□□ -0.87
SF3B3-201ENST00000302516 WIZO95785 1651 aa9.61□□□□□ -0.87
SF3B3-201ENST00000302516 CARMIL1Q5VZK9 1371 aa9.61□□□□□ -0.87
SF3B3-201ENST00000302516 ERCC6Q03468 1493 aa9.61□□□□□ -0.87
SF3B3-201ENST00000302516 NEUROD2Q15784 382 aa9.6□□□□□ -0.87
SF3B3-201ENST00000302516 GOLGA2Q08379 1002 aa9.6□□□□□ -0.87
SF3B3-201ENST00000302516 HDGFP51858 240 aaKnown RBP9.6□□□□□ -0.87
SF3B3-201ENST00000302516 MORC1Q86VD1 984 aa9.6□□□□□ -0.87
SF3B3-201ENST00000302516 HDAC5Q9UQL6 1122 aa9.6□□□□□ -0.87
SF3B3-201ENST00000302516 RAB3GAP2Q9H2M9 1393 aa9.59□□□□□ -0.87
SF3B3-201ENST00000302516 KIF15Q9NS87 1388 aa9.59□□□□□ -0.87
SF3B3-201ENST00000302516 ZBTB7CA1YPR0 619 aa9.59□□□□□ -0.87
SF3B3-201ENST00000302516 TPRNQ4KMQ1 711 aa9.59□□□□□ -0.87
SF3B3-201ENST00000302516 SIN3AQ96ST3 1273 aa9.59□□□□□ -0.87
SF3B3-201ENST00000302516 U2SURPO15042 1029 aaKnown RBP9.59□□□□□ -0.87
SF3B3-201ENST00000302516 CUX1P39880 1505 aa9.58□□□□□ -0.88
SF3B3-201ENST00000302516 ANKRD30AQ9BXX3 1397 aa9.57□□□□□ -0.88
SF3B3-201ENST00000302516 NAP1L2Q9ULW6 460 aaPredicted RBP9.57□□□□□ -0.88
SF3B3-201ENST00000302516 CARMIL2Q6F5E8 1435 aa9.57□□□□□ -0.88
SF3B3-201ENST00000302516 HSPA5P11021 654 aaKnown RBP9.57□□□□□ -0.88
SF3B3-201ENST00000302516 SKOR2Q2VWA4 1001 aaPredicted RBP9.57□□□□□ -0.88
SF3B3-201ENST00000302516 DCAF11Q8TEB1 546 aa9.57□□□□□ -0.88
SF3B3-201ENST00000302516 HMMRO75330 724 aa9.57□□□□□ -0.88
SF3B3-201ENST00000302516 TNNT3P45378 269 aaPredicted RBP9.57□□□□□ -0.88
SF3B3-201ENST00000302516 CCDC88BA6NC98 1476 aa9.56□□□□□ -0.88
SF3B3-201ENST00000302516 A0A0G2JS52 829 aa9.56□□□□□ -0.88
SF3B3-201ENST00000302516 NOC3LQ8WTT2 800 aaKnown RBP9.56□□□□□ -0.88
SF3B3-201ENST00000302516 SOGA1O94964 1423 aa9.56□□□□□ -0.88
SF3B3-201ENST00000302516 RTF1Q92541 710 aaKnown RBP9.55□□□□□ -0.88
SF3B3-201ENST00000302516 KCNH8Q96L42 1107 aa9.55□□□□□ -0.88
SF3B3-201ENST00000302516 CHMP4CQ96CF2 233 aa9.55□□□□□ -0.88
SF3B3-201ENST00000302516 UACAQ9BZF9 1416 aa9.55□□□□□ -0.88
SF3B3-201ENST00000302516 ST18O60284 1047 aa9.55□□□□□ -0.88
SF3B3-201ENST00000302516 PLPPR3Q6T4P5 718 aa9.55□□□□□ -0.88
SF3B3-201ENST00000302516 HDGFL2Q7Z4V5 671 aaPredicted RBP9.55□□□□□ -0.88
SF3B3-201ENST00000302516 KIF3AQ9Y496 699 aa9.55□□□□□ -0.88
SF3B3-201ENST00000302516 ITPRIPQ8IWB1 547 aa9.54□□□□□ -0.88
SF3B3-201ENST00000302516 SMARCA4P51532 1647 aa9.54□□□□□ -0.88
SF3B3-201ENST00000302516 SETQ01105 290 aaPredicted RBP9.54□□□□□ -0.88
SF3B3-201ENST00000302516 HSP90AA2PQ14568 343 aaPredicted RBP9.54□□□□□ -0.88
SF3B3-201ENST00000302516 SPAG9O60271 1321 aaKnown RBP9.54□□□□□ -0.88
SF3B3-201ENST00000302516 TSHZ2Q9NRE2 1034 aa9.53□□□□□ -0.88
SF3B3-201ENST00000302516 KIF16BQ96L93 1317 aa9.53□□□□□ -0.88
SF3B3-201ENST00000302516 LMOD3Q0VAK6 560 aa9.53□□□□□ -0.88
SF3B3-201ENST00000302516 FANCIQ9NVI1 1328 aa9.53□□□□□ -0.88
SF3B3-201ENST00000302516 ATP6V1DQ9Y5K8 247 aa9.53□□□□□ -0.88
SF3B3-201ENST00000302516 ZBED9Q6R2W3 1325 aa9.53□□□□□ -0.88
SF3B3-201ENST00000302516 CENPQQ7L2Z9 268 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-201ENST00000302516 NLRP13Q86W25 1043 aa9.52□□□□□ -0.88
SF3B3-201ENST00000302516 SPRYD3Q8NCJ5 442 aa9.51□□□□□ -0.89
SF3B3-201ENST00000302516 SLKQ9H2G2 1235 aaPredicted RBP9.51□□□□□ -0.89
SF3B3-201ENST00000302516 CENPJQ9HC77 1338 aaPredicted RBP9.51□□□□□ -0.89
SF3B3-201ENST00000302516 NPHP1O15259 732 aa9.51□□□□□ -0.89
SF3B3-201ENST00000302516 SRPK2P78362 688 aaKnown RBP9.51□□□□□ -0.89
SF3B3-201ENST00000302516 MROH2BQ7Z745 1585 aa9.51□□□□□ -0.89
SF3B3-201ENST00000302516 RAPGEF2Q9Y4G8 1499 aa9.51□□□□□ -0.89
SF3B3-201ENST00000302516 PRDM2Q13029 1718 aa9.5□□□□□ -0.89
SF3B3-201ENST00000302516 MYBBP1AQ9BQG0 1328 aaKnown RBP9.5□□□□□ -0.89
SF3B3-201ENST00000302516 GZF1Q9H116 711 aaPredicted RBP9.49□□□□□ -0.89
SF3B3-201ENST00000302516 NGEFQ8N5V2 710 aa9.49□□□□□ -0.89
SF3B3-201ENST00000302516 GPS2Q13227 327 aa9.49□□□□□ -0.89
SF3B3-201ENST00000302516 FAM161AQ3B820 660 aa9.49□□□□□ -0.89
SF3B3-201ENST00000302516 STK31Q9BXU1 1019 aa9.48□□□□□ -0.89
SF3B3-201ENST00000302516 AAMPQ13685 434 aa9.48□□□□□ -0.89
SF3B3-201ENST00000302516 KIF21BO75037 1637 aa9.48□□□□□ -0.89
SF3B3-201ENST00000302516 PKD2Q13563 968 aa9.48□□□□□ -0.89
SF3B3-201ENST00000302516 MFAP1P55081 439 aaKnown RBP9.48□□□□□ -0.89
SF3B3-201ENST00000302516 TPM3P06753 285 aa9.48□□□□□ -0.89
SF3B3-201ENST00000302516 GSE1Q14687 1217 aa9.48□□□□□ -0.89
SF3B3-201ENST00000302516 ROCK1Q13464 1354 aa9.47□□□□□ -0.89
SF3B3-201ENST00000302516 NUP155O75694 1391 aa9.47□□□□□ -0.89
SF3B3-201ENST00000302516 TERF2IPQ9NYB0 399 aa9.47□□□□□ -0.89
SF3B3-201ENST00000302516 CECR2Q9BXF3 1484 aa9.47□□□□□ -0.89
SF3B3-201ENST00000302516 CCDC70Q6NSX1 233 aa9.47□□□□□ -0.89
SF3B3-201ENST00000302516 MPHOSPH9Q99550 1183 aa9.47□□□□□ -0.89
SF3B3-201ENST00000302516 SMC4Q9NTJ3 1288 aa9.47□□□□□ -0.89
SF3B3-201ENST00000302516 RSPH4AQ5TD94 716 aa9.46□□□□□ -0.89
SF3B3-201ENST00000302516 MTERF4Q7Z6M4 381 aaKnown RBP9.46□□□□□ -0.9
SF3B3-201ENST00000302516 CGNL1Q0VF96 1302 aa9.46□□□□□ -0.9
SF3B3-201ENST00000302516 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms