RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 EFCAB2Q5VUJ9 269 aa24.47■■□□□ 1.51
CCDC88B-201ENST00000301897 MYO5CQ9NQX4 1742 aa24.47■■□□□ 1.51
CCDC88B-201ENST00000301897 ATP1B4Q9UN42 357 aaPredicted RBP24.45■■□□□ 1.5
CCDC88B-201ENST00000301897 FER1L4A9Z1Z3 1794 aa24.43■■□□□ 1.5
CCDC88B-201ENST00000301897 ATP10AO60312 1499 aa24.43■■□□□ 1.5
CCDC88B-201ENST00000301897 ARHGAP35Q9NRY4 1499 aa24.43■■□□□ 1.5
CCDC88B-201ENST00000301897 SIGLEC1Q9BZZ2 1709 aa24.42■■□□□ 1.5
CCDC88B-201ENST00000301897 KIF14Q15058 1648 aa24.42■■□□□ 1.5
CCDC88B-201ENST00000301897 CLIP1P30622 1438 aa24.4■■□□□ 1.5
CCDC88B-201ENST00000301897 C9orf84Q5VXU9 1444 aa24.4■■□□□ 1.5
CCDC88B-201ENST00000301897 TROQ12816 1431 aaPredicted RBP24.39■■□□□ 1.5
CCDC88B-201ENST00000301897 MLECQ14165 292 aa24.39■■□□□ 1.49
CCDC88B-201ENST00000301897 ZNF518AQ6AHZ1 1483 aa24.38■■□□□ 1.49
CCDC88B-201ENST00000301897 ARHGEF12Q9NZN5 1544 aa24.36■■□□□ 1.49
CCDC88B-201ENST00000301897 PLPPR3Q6T4P5 718 aa24.36■■□□□ 1.49
CCDC88B-201ENST00000301897 HSPA2P54652 639 aa24.35■■□□□ 1.49
CCDC88B-201ENST00000301897 EHMT2Q96KQ7 1210 aa24.35■■□□□ 1.49
CCDC88B-201ENST00000301897 ARHGAP5Q13017 1502 aa24.34■■□□□ 1.49
CCDC88B-201ENST00000301897 KDM5CP41229 1560 aa24.32■■□□□ 1.48
CCDC88B-201ENST00000301897 PREX1Q8TCU6 1659 aa24.28■■□□□ 1.48
CCDC88B-201ENST00000301897 CHIC1Q5VXU3 224 aa24.28■■□□□ 1.48
CCDC88B-201ENST00000301897 CCDC18Q5T9S5 1454 aa24.26■■□□□ 1.47
CCDC88B-201ENST00000301897 AFAP1Q8N556 730 aa24.26■■□□□ 1.47
CCDC88B-201ENST00000301897 SETD1BQ9UPS6 1966 aaKnown RBP24.25■■□□□ 1.47
CCDC88B-201ENST00000301897 REREQ9P2R6 1566 aa24.25■■□□□ 1.47
CCDC88B-201ENST00000301897 LRRIQ1Q96JM4 1722 aa24.25■■□□□ 1.47
CCDC88B-201ENST00000301897 MYT1LQ9UL68 1186 aa24.25■■□□□ 1.47
CCDC88B-201ENST00000301897 MLH3Q9UHC1 1453 aa24.23■■□□□ 1.47
CCDC88B-201ENST00000301897 CDC42BPBQ9Y5S2 1711 aa24.23■■□□□ 1.47
CCDC88B-201ENST00000301897 DIP2CQ9Y2E4 1556 aa24.22■■□□□ 1.47
CCDC88B-201ENST00000301897 CASKIN1Q8WXD9 1431 aa24.22■■□□□ 1.47
CCDC88B-201ENST00000301897 PREX2Q70Z35 1606 aa24.21■■□□□ 1.47
CCDC88B-201ENST00000301897 CERKQ8TCT0 537 aa24.21■■□□□ 1.47
CCDC88B-201ENST00000301897 DMRT2Q9Y5R5 561 aa24.2■■□□□ 1.46
CCDC88B-201ENST00000301897 UHRF1BP1Q6BDS2 1440 aa24.18■■□□□ 1.46
CCDC88B-201ENST00000301897 CEBPAP49715 358 aaPredicted RBP24.18■■□□□ 1.46
CCDC88B-201ENST00000301897 ABCC1P33527 1531 aa24.18■■□□□ 1.46
CCDC88B-201ENST00000301897 AGLP35573 1532 aa24.17■■□□□ 1.46
CCDC88B-201ENST00000301897 ESF1Q9H501 851 aaKnown RBP24.16■■□□□ 1.46
CCDC88B-201ENST00000301897 ABCA6Q8N139 1617 aa24.16■■□□□ 1.46
CCDC88B-201ENST00000301897 ITSN2Q9NZM3 1697 aa24.15■■□□□ 1.46
CCDC88B-201ENST00000301897 FYCO1Q9BQS8 1478 aa24.13■■□□□ 1.45
CCDC88B-201ENST00000301897 TRAPPC8Q9Y2L5 1435 aa24.13■■□□□ 1.45
CCDC88B-201ENST00000301897 CDC42BPAQ5VT25 1732 aa24.11■■□□□ 1.45
CCDC88B-201ENST00000301897 CNTLNQ9NXG0 1405 aa24.1■■□□□ 1.45
CCDC88B-201ENST00000301897 STRCQ7RTU9 1775 aa24.09■■□□□ 1.45
CCDC88B-201ENST00000301897 C3P01024 1663 aa24.09■■□□□ 1.45
CCDC88B-201ENST00000301897 KIDINS220Q9ULH0 1771 aa24.08■■□□□ 1.44
CCDC88B-201ENST00000301897 PTPRTO14522 1441 aa24.04■■□□□ 1.44
CCDC88B-201ENST00000301897 SAMD9LQ8IVG5 1584 aa24.03■■□□□ 1.44
CCDC88B-201ENST00000301897 PLEKHH2Q8IVE3 1493 aa24■■□□□ 1.43
CCDC88B-201ENST00000301897 ZNF777Q9ULD5 760 aaPredicted RBP24■■□□□ 1.43
CCDC88B-201ENST00000301897 SPAG9O60271 1321 aaKnown RBP24■■□□□ 1.43
CCDC88B-201ENST00000301897 GPATCH8Q9UKJ3 1502 aaKnown RBP24■■□□□ 1.43
CCDC88B-201ENST00000301897 MROH2AA6NES4 1674 aa23.99■■□□□ 1.43
CCDC88B-201ENST00000301897 NPATQ14207 1427 aa23.99■■□□□ 1.43
CCDC88B-201ENST00000301897 SYCP2Q9BX26 1530 aa23.99■■□□□ 1.43
CCDC88B-201ENST00000301897 KIAA1107Q9UPP5 1409 aa23.98■■□□□ 1.43
CCDC88B-201ENST00000301897 CFDP1Q9UEE9 299 aaPredicted RBP23.95■■□□□ 1.42
CCDC88B-201ENST00000301897 CCNB3Q8WWL7 1395 aa23.94■■□□□ 1.42
CCDC88B-201ENST00000301897 ATP7AQ04656 1500 aa23.94■■□□□ 1.42
CCDC88B-201ENST00000301897 NCOA1Q15788 1441 aa23.93■■□□□ 1.42
CCDC88B-201ENST00000301897 HNRNPMP52272 730 aaKnown RBP eCLIP23.93■■□□□ 1.42
CCDC88B-201ENST00000301897 ZMYM3Q14202 1370 aa23.91■■□□□ 1.42
CCDC88B-201ENST00000301897 SUPT6HQ7KZ85 1726 aaKnown RBP23.91■■□□□ 1.42
CCDC88B-201ENST00000301897 INO80Q9ULG1 1556 aaPredicted RBP23.91■■□□□ 1.42
CCDC88B-201ENST00000301897 MTUS2Q5JR59 1369 aa23.91■■□□□ 1.42
CCDC88B-201ENST00000301897 A2MP01023 1474 aa23.89■■□□□ 1.42
CCDC88B-201ENST00000301897 IQSEC2Q5JU85 1478 aa23.89■■□□□ 1.42
CCDC88B-201ENST00000301897 PLXNC1O60486 1568 aa23.89■■□□□ 1.41
CCDC88B-201ENST00000301897 PPP6R1Q9UPN7 881 aa23.87■■□□□ 1.41
CCDC88B-201ENST00000301897 CAMSAP1Q5T5Y3 1602 aa23.86■■□□□ 1.41
CCDC88B-201ENST00000301897 LTBP4Q8N2S1 1624 aa23.85■■□□□ 1.41
CCDC88B-201ENST00000301897 CLTCQ00610 1675 aaKnown RBP23.84■■□□□ 1.41
CCDC88B-201ENST00000301897 ADGBQ8N7X0 1667 aa23.84■■□□□ 1.41
CCDC88B-201ENST00000301897 ZNF142P52746 1687 aaPredicted RBP23.82■■□□□ 1.4
CCDC88B-201ENST00000301897 EHBP1L1Q8N3D4 1523 aa23.8■■□□□ 1.4
CCDC88B-201ENST00000301897 PKD2Q13563 968 aa23.8■■□□□ 1.4
CCDC88B-201ENST00000301897 PLA2R1Q13018 1463 aa23.8■■□□□ 1.4
CCDC88B-201ENST00000301897 DISP3Q9P2K9 1392 aa23.79■■□□□ 1.4
CCDC88B-201ENST00000301897 TIAM1Q13009 1591 aa23.79■■□□□ 1.4
CCDC88B-201ENST00000301897 PTPRKQ15262 1439 aa23.79■■□□□ 1.4
CCDC88B-201ENST00000301897 GGT6Q6P531 493 aa23.79■■□□□ 1.4
CCDC88B-201ENST00000301897 MYO3AQ8NEV4 1616 aa23.79■■□□□ 1.4
CCDC88B-201ENST00000301897 RTEL1-TNFRSF6BF6WH68 1400 aa23.78■■□□□ 1.4
CCDC88B-201ENST00000301897 CEP170BQ9Y4F5 1589 aaPredicted RBP23.77■■□□□ 1.4
CCDC88B-201ENST00000301897 CEP162Q5TB80 1403 aa23.76■■□□□ 1.39
CCDC88B-201ENST00000301897 MBD5Q9P267 1494 aa23.75■■□□□ 1.39
CCDC88B-201ENST00000301897 NCKAP5LQ9HCH0 1330 aa23.74■■□□□ 1.39
CCDC88B-201ENST00000301897 ZNF644Q9H582 1327 aaPredicted RBP23.73■■□□□ 1.39
CCDC88B-201ENST00000301897 TCOF1Q13428 1488 aaKnown RBP23.73■■□□□ 1.39
CCDC88B-201ENST00000301897 DHX29Q7Z478 1369 aaKnown RBP23.72■■□□□ 1.39
CCDC88B-201ENST00000301897 FAM135AQ9P2D6 1515 aa23.7■■□□□ 1.38
CCDC88B-201ENST00000301897 RSPH4AQ5TD94 716 aa23.7■■□□□ 1.38
CCDC88B-201ENST00000301897 A2ML1A8K2U0 1454 aa23.69■■□□□ 1.38
CCDC88B-201ENST00000301897 SPATA31D1Q6ZQQ2 1576 aa23.68■■□□□ 1.38
CCDC88B-201ENST00000301897 CCDC141Q6ZP82 1450 aa23.68■■□□□ 1.38
CCDC88B-201ENST00000301897 ZNF335Q9H4Z2 1342 aaPredicted RBP23.67■■□□□ 1.38
CCDC88B-201ENST00000301897 DNMT1P26358 1616 aaKnown RBP23.63■■□□□ 1.37
CCDC88B-201ENST00000301897 SOCS7O14512 581 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms