RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 DAPK1P53355 1430 aa31.33■■■□□ 2.61
TPM4-201ENST00000300933 PLEKHD1A6NEE1 506 aa31.32■■■□□ 2.61
TPM4-201ENST00000300933 KIF14Q15058 1648 aa31.32■■■□□ 2.6
TPM4-201ENST00000300933 DDX10Q13206 875 aaKnown RBP31.3■■■□□ 2.6
TPM4-201ENST00000300933 MPHOSPH9Q99550 1183 aa31.3■■■□□ 2.6
TPM4-201ENST00000300933 TIMELESSQ9UNS1 1208 aa31.3■■■□□ 2.6
TPM4-201ENST00000300933 DENND4BO75064 1496 aaPredicted RBP31.26■■■□□ 2.6
TPM4-201ENST00000300933 ATP10BO94823 1461 aa31.26■■■□□ 2.59
TPM4-201ENST00000300933 GPATCH8Q9UKJ3 1502 aaKnown RBP31.25■■■□□ 2.59
TPM4-201ENST00000300933 PTPRGP23470 1445 aa31.25■■■□□ 2.59
TPM4-201ENST00000300933 GCC2Q8IWJ2 1684 aa31.22■■■□□ 2.59
TPM4-201ENST00000300933 CHD1O14646 1710 aa31.21■■■□□ 2.59
TPM4-201ENST00000300933 CAMSAP2Q08AD1 1489 aa31.21■■■□□ 2.59
TPM4-201ENST00000300933 ABCA8O94911 1581 aa31.19■■■□□ 2.58
TPM4-201ENST00000300933 KCNH8Q96L42 1107 aa31.18■■■□□ 2.58
TPM4-201ENST00000300933 DNMT1P26358 1616 aaKnown RBP31.17■■■□□ 2.58
TPM4-201ENST00000300933 AKNAQ7Z591 1439 aa31.17■■■□□ 2.58
TPM4-201ENST00000300933 SLC4A1APQ9BWU0 796 aaKnown RBP31.14■■■□□ 2.58
TPM4-201ENST00000300933 ROCK1Q13464 1354 aa31.12■■■□□ 2.57
TPM4-201ENST00000300933 HNRNPMP52272 730 aaKnown RBP eCLIP31.1■■■□□ 2.57
TPM4-201ENST00000300933 ERCC6L2Q5T890 1561 aa31.1■■■□□ 2.57
TPM4-201ENST00000300933 L3MBTL2Q969R5 705 aa31.07■■■□□ 2.56
TPM4-201ENST00000300933 NCOA1Q15788 1441 aa31.06■■■□□ 2.56
TPM4-201ENST00000300933 SUPT16HQ9Y5B9 1047 aaKnown RBP31.04■■■□□ 2.56
TPM4-201ENST00000300933 KDM5BQ9UGL1 1544 aa31.04■■■□□ 2.56
TPM4-201ENST00000300933 ITSN2Q9NZM3 1697 aa31.03■■■□□ 2.56
TPM4-201ENST00000300933 ADCY10Q96PN6 1610 aa31.03■■■□□ 2.56
TPM4-201ENST00000300933 ABCC10Q5T3U5 1492 aa31.02■■■□□ 2.56
TPM4-201ENST00000300933 CDC42BPAQ5VT25 1732 aa31■■■□□ 2.55
TPM4-201ENST00000300933 ANKRD30BQ9BXX2 1392 aa30.96■■■□□ 2.55
TPM4-201ENST00000300933 TSPY4P0CV99 314 aa30.94■■■□□ 2.54
TPM4-201ENST00000300933 TSPY10P0CW01 314 aa30.94■■■□□ 2.54
TPM4-201ENST00000300933 ANKRD30AQ9BXX3 1397 aa30.94■■■□□ 2.54
TPM4-201ENST00000300933 PKD2Q13563 968 aa30.91■■■□□ 2.54
TPM4-201ENST00000300933 HSPA5P11021 654 aaKnown RBP30.9■■■□□ 2.54
TPM4-201ENST00000300933 PZPP20742 1482 aa30.88■■■□□ 2.53
TPM4-201ENST00000300933 NBPF8Q3BBV2 869 aa30.88■■■□□ 2.53
TPM4-201ENST00000300933 C9orf84Q5VXU9 1444 aa30.88■■■□□ 2.53
TPM4-201ENST00000300933 ANKRD50Q9ULJ7 1429 aa30.88■■■□□ 2.53
TPM4-201ENST00000300933 SHROOM2Q13796 1616 aa30.85■■■□□ 2.53
TPM4-201ENST00000300933 ADGRL2O95490 1459 aa30.82■■■□□ 2.52
TPM4-201ENST00000300933 CROCC2H7BZ55 1655 aa30.82■■■□□ 2.52
TPM4-201ENST00000300933 NUP155O75694 1391 aa30.82■■■□□ 2.52
TPM4-201ENST00000300933 ADGBQ8N7X0 1667 aa30.82■■■□□ 2.52
TPM4-201ENST00000300933 ZNF326Q5BKZ1 582 aaKnown RBP30.81■■■□□ 2.52
TPM4-201ENST00000300933 RPRD2Q5VT52 1461 aaKnown RBP30.81■■■□□ 2.52
TPM4-201ENST00000300933 TSHZ2Q9NRE2 1034 aa30.78■■■□□ 2.52
TPM4-201ENST00000300933 EIF4G2P78344 907 aaKnown RBP eCLIP30.78■■■□□ 2.523e-9■■■□□ 15.5
TPM4-201ENST00000300933 KIF15Q9NS87 1388 aa30.77■■■□□ 2.52
TPM4-201ENST00000300933 MBD5Q9P267 1494 aa30.77■■■□□ 2.52
TPM4-201ENST00000300933 ANP32CO43423 234 aa30.76■■■□□ 2.52
TPM4-201ENST00000300933 CDC42BPBQ9Y5S2 1711 aa30.76■■■□□ 2.51
TPM4-201ENST00000300933 WASHC2AQ641Q2 1341 aa30.75■■■□□ 2.51
TPM4-201ENST00000300933 TTC37Q6PGP7 1564 aa30.74■■■□□ 2.51
TPM4-201ENST00000300933 SAMD9LQ8IVG5 1584 aa30.74■■■□□ 2.51
TPM4-201ENST00000300933 C11orf95C9JLR9 678 aaPredicted RBP30.73■■■□□ 2.51
TPM4-201ENST00000300933 ABCC2Q92887 1545 aa30.73■■■□□ 2.51
TPM4-201ENST00000300933 ARHGAP5Q13017 1502 aa30.72■■■□□ 2.51
TPM4-201ENST00000300933 KIAA1107Q9UPP5 1409 aa30.71■■■□□ 2.51
TPM4-201ENST00000300933 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.71■■■□□ 2.511e-6■■□□□ 14.3
TPM4-201ENST00000300933 TEX14Q8IWB6 1497 aa30.71■■■□□ 2.51
TPM4-201ENST00000300933 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.7■■■□□ 2.59e-7■■□□□ 13.1
TPM4-201ENST00000300933 CLASP1Q7Z460 1538 aa30.67■■■□□ 2.5
TPM4-201ENST00000300933 SYCP2Q9BX26 1530 aa30.67■■■□□ 2.5
TPM4-201ENST00000300933 SHANK2Q9UPX8 1470 aa30.66■■■□□ 2.5
TPM4-201ENST00000300933 PREX2Q70Z35 1606 aa30.66■■■□□ 2.5
TPM4-201ENST00000300933 CCDC141Q6ZP82 1450 aa30.65■■■□□ 2.5
TPM4-201ENST00000300933 KDM2AQ9Y2K7 1162 aa30.62■■■□□ 2.49
TPM4-201ENST00000300933 ANP32EQ9BTT0 268 aa30.61■■■□□ 2.49
TPM4-201ENST00000300933 ARHGEF5Q12774 1597 aa30.59■■■□□ 2.49
TPM4-201ENST00000300933 BCANQ96GW7 911 aa30.58■■■□□ 2.49
TPM4-201ENST00000300933 ZCCHC11Q5TAX3 1644 aaKnown RBP30.57■■■□□ 2.48
TPM4-201ENST00000300933 RSPH4AQ5TD94 716 aa30.56■■■□□ 2.48
TPM4-201ENST00000300933 ARHGEF12Q9NZN5 1544 aa30.54■■■□□ 2.48
TPM4-201ENST00000300933 POLR3GLQ9BT43 218 aa30.54■■■□□ 2.48
TPM4-201ENST00000300933 CNGB1Q14028 1251 aaPredicted RBP30.52■■■□□ 2.48
TPM4-201ENST00000300933 EFCAB2Q5VUJ9 269 aa30.51■■■□□ 2.48
TPM4-201ENST00000300933 CCER2I3L3R5 266 aa30.5■■■□□ 2.47
TPM4-201ENST00000300933 MYO5CQ9NQX4 1742 aa30.49■■■□□ 2.47
TPM4-201ENST00000300933 AFAP1Q8N556 730 aa30.49■■■□□ 2.47
TPM4-201ENST00000300933 DCAF11Q8TEB1 546 aa30.49■■■□□ 2.47
TPM4-201ENST00000300933 RGL3Q3MIN7 710 aa30.48■■■□□ 2.47
TPM4-201ENST00000300933 PLCH2O75038 1416 aa30.47■■■□□ 2.47
TPM4-201ENST00000300933 CCDC7Q96M83 1385 aa30.47■■■□□ 2.47
TPM4-201ENST00000300933 PLEKHH2Q8IVE3 1493 aa30.47■■■□□ 2.47
TPM4-201ENST00000300933 KIF7Q2M1P5 1343 aa30.45■■■□□ 2.46
TPM4-201ENST00000300933 TRAPPC8Q9Y2L5 1435 aa30.44■■■□□ 2.46
TPM4-201ENST00000300933 UHRF1BP1LA0JNW5 1464 aa30.43■■■□□ 2.46
TPM4-201ENST00000300933 SPATA31E1Q6ZUB1 1445 aa30.43■■■□□ 2.46
TPM4-201ENST00000300933 FAM135AQ9P2D6 1515 aa30.43■■■□□ 2.46
TPM4-201ENST00000300933 CCDC184Q52MB2 194 aa30.4■■■□□ 2.46
TPM4-201ENST00000300933 USP47Q96K76 1375 aa30.38■■■□□ 2.45
TPM4-201ENST00000300933 KDM5DQ9BY66 1539 aa30.37■■■□□ 2.45
TPM4-201ENST00000300933 FKBP8Q14318 412 aa30.37■■■□□ 2.45
TPM4-201ENST00000300933 MYT1LQ9UL68 1186 aa30.37■■■□□ 2.45
TPM4-201ENST00000300933 CARD11Q9BXL7 1154 aa30.37■■■□□ 2.45
TPM4-201ENST00000300933 CNTLNQ9NXG0 1405 aa30.35■■■□□ 2.45
TPM4-201ENST00000300933 OSCARQ8IYS5 282 aa30.33■■■□□ 2.45
TPM4-201ENST00000300933 SPAG9O60271 1321 aaKnown RBP30.33■■■□□ 2.45
TPM4-201ENST00000300933 CCDC144AA2RUR9 1427 aa30.29■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms