RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 RBM10P98175 930 aaKnown RBP14.75□□□□□ -0.05
SHROOM3-201ENST00000296043 STAG3Q9UJ98 1225 aa14.74□□□□□ -0.05
SHROOM3-201ENST00000296043 KNSTRNQ9Y448 316 aa14.74□□□□□ -0.05
SHROOM3-201ENST00000296043 CC2D1BQ5T0F9 858 aaKnown RBP14.74□□□□□ -0.05
SHROOM3-201ENST00000296043 PLEKHG5O94827 1062 aa14.73□□□□□ -0.05
SHROOM3-201ENST00000296043 TPM4P67936 248 aa14.73□□□□□ -0.05
SHROOM3-201ENST00000296043 NOL8Q76FK4 1167 aaKnown RBP14.73□□□□□ -0.05
SHROOM3-201ENST00000296043 GPS2Q13227 327 aa14.72□□□□□ -0.05
SHROOM3-201ENST00000296043 CFAP53Q96M91 514 aa14.72□□□□□ -0.05
SHROOM3-201ENST00000296043 R3HCC1Q9Y3T6 440 aaKnown RBP14.71□□□□□ -0.05
SHROOM3-201ENST00000296043 CSPP1Q1MSJ5 1256 aa14.71□□□□□ -0.05
SHROOM3-201ENST00000296043 RCAN3Q9UKA8 241 aa14.7□□□□□ -0.06
SHROOM3-201ENST00000296043 RRP7BPQ9NSQ0 103 aa14.69□□□□□ -0.06
SHROOM3-201ENST00000296043 TPM2P07951 284 aa14.69□□□□□ -0.06
SHROOM3-201ENST00000296043 CREBRFQ8IUR6 639 aa14.69□□□□□ -0.06
SHROOM3-201ENST00000296043 TPM3P06753 285 aa14.68□□□□□ -0.06
SHROOM3-201ENST00000296043 CCER2I3L3R5 266 aa14.68□□□□□ -0.06
SHROOM3-201ENST00000296043 MS4A1P11836 297 aa14.68□□□□□ -0.06
SHROOM3-201ENST00000296043 CCDC66A2RUB6 948 aa14.67□□□□□ -0.06
SHROOM3-201ENST00000296043 MAP7D2Q96T17 732 aa14.67□□□□□ -0.06
SHROOM3-201ENST00000296043 HSP90AB3PQ58FF7 597 aa14.67□□□□□ -0.06
SHROOM3-201ENST00000296043 AEBP1Q8IUX7 1158 aa14.67□□□□□ -0.06
SHROOM3-201ENST00000296043 HSP90B1P14625 803 aaKnown RBP14.67□□□□□ -0.06
SHROOM3-201ENST00000296043 FBLN2P98095 1184 aa14.67□□□□□ -0.06
SHROOM3-201ENST00000296043 MAPK8IP3Q9UPT6 1336 aa14.66□□□□□ -0.06
SHROOM3-201ENST00000296043 KIAA1211Q6ZU35 1233 aa14.66□□□□□ -0.06
SHROOM3-201ENST00000296043 RRP12Q5JTH9 1297 aaKnown RBP14.66□□□□□ -0.06
SHROOM3-201ENST00000296043 CWC15Q9P013 229 aaKnown RBP14.66□□□□□ -0.06
SHROOM3-201ENST00000296043 CHMP4BQ9H444 224 aaKnown RBP14.66□□□□□ -0.06
SHROOM3-201ENST00000296043 FOXD4L6Q3SYB3 417 aaPredicted RBP14.65□□□□□ -0.06
SHROOM3-201ENST00000296043 PLPPR3Q6T4P5 718 aa14.65□□□□□ -0.06
SHROOM3-201ENST00000296043 FOXD4L3Q6VB84 417 aaPredicted RBP14.65□□□□□ -0.06
SHROOM3-201ENST00000296043 PLCD4Q9BRC7 762 aa14.64□□□□□ -0.07
SHROOM3-201ENST00000296043 DDX49Q9Y6V7 483 aaKnown RBP14.64□□□□□ -0.07
SHROOM3-201ENST00000296043 RDXP35241 583 aaKnown RBP14.64□□□□□ -0.07
SHROOM3-201ENST00000296043 MTERF4Q7Z6M4 381 aaKnown RBP14.63□□□□□ -0.07
SHROOM3-201ENST00000296043 KIF16BQ96L93 1317 aa14.63□□□□□ -0.07
SHROOM3-201ENST00000296043 RRP9O43818 475 aaKnown RBP14.63□□□□□ -0.07
SHROOM3-201ENST00000296043 FBXO3Q9UK99 471 aa14.62□□□□□ -0.07
SHROOM3-201ENST00000296043 SIN3AQ96ST3 1273 aa14.62□□□□□ -0.07
SHROOM3-201ENST00000296043 UBE2Q2Q8WVN8 375 aa14.62□□□□□ -0.07
SHROOM3-201ENST00000296043 PDE4AP27815 886 aa14.61□□□□□ -0.07
SHROOM3-201ENST00000296043 PRM3Q9NNZ6 103 aa14.61□□□□□ -0.07
SHROOM3-201ENST00000296043 CLIP1P30622 1438 aa14.61□□□□□ -0.07
SHROOM3-201ENST00000296043 ITPRIPQ8IWB1 547 aa14.61□□□□□ -0.07
SHROOM3-201ENST00000296043 PRDM10Q9NQV6 1147 aa14.61□□□□□ -0.07
SHROOM3-201ENST00000296043 C14orf37Q86TY3 774 aa14.61□□□□□ -0.07
SHROOM3-201ENST00000296043 H0YHG0 523 aa14.6□□□□□ -0.07
SHROOM3-201ENST00000296043 SKOR2Q2VWA4 1001 aaPredicted RBP14.59□□□□□ -0.07
SHROOM3-201ENST00000296043 RWDD1Q9H446 243 aaPredicted RBP14.58□□□□□ -0.07
SHROOM3-201ENST00000296043 U2SURPO15042 1029 aaKnown RBP14.58□□□□□ -0.08
SHROOM3-201ENST00000296043 RBM25P49756 843 aaKnown RBP14.57□□□□□ -0.08
SHROOM3-201ENST00000296043 CCDC70Q6NSX1 233 aa14.57□□□□□ -0.08
SHROOM3-201ENST00000296043 ERICH4A6NGS2 130 aa14.57□□□□□ -0.08
SHROOM3-201ENST00000296043 NASPP49321 788 aaPredicted RBP14.57□□□□□ -0.08
SHROOM3-201ENST00000296043 IFT57Q9NWB7 429 aa14.57□□□□□ -0.08
SHROOM3-201ENST00000296043 CARD11Q9BXL7 1154 aa14.56□□□□□ -0.08
SHROOM3-201ENST00000296043 HOMER1Q86YM7 354 aa14.56□□□□□ -0.08
SHROOM3-201ENST00000296043 RGL3Q3MIN7 710 aa14.55□□□□□ -0.08
SHROOM3-201ENST00000296043 CFAP44Q96MT7 982 aa14.55□□□□□ -0.08
SHROOM3-201ENST00000296043 GOLGA6L19H0YKK7 550 aa14.55□□□□□ -0.08
SHROOM3-201ENST00000296043 HAP1P54257 671 aaPredicted RBP14.55□□□□□ -0.08
SHROOM3-201ENST00000296043 AK7Q96M32 723 aa14.55□□□□□ -0.08
SHROOM3-201ENST00000296043 CCDC191Q8NCU4 936 aa14.54□□□□□ -0.08
SHROOM3-201ENST00000296043 ARGLU1Q9NWB6 273 aaPredicted RBP14.54□□□□□ -0.08
SHROOM3-201ENST00000296043 CEP162Q5TB80 1403 aa14.54□□□□□ -0.08
SHROOM3-201ENST00000296043 NFKBIBQ15653 356 aa14.54□□□□□ -0.08
SHROOM3-201ENST00000296043 DHX37Q8IY37 1157 aaKnown RBP14.53□□□□□ -0.08
SHROOM3-201ENST00000296043 PES1O00541 588 aaKnown RBP14.53□□□□□ -0.08
SHROOM3-201ENST00000296043 ISY1Q9ULR0 285 aaKnown RBP14.53□□□□□ -0.08
SHROOM3-201ENST00000296043 KCNH8Q96L42 1107 aa14.53□□□□□ -0.08
SHROOM3-201ENST00000296043 MEX3CQ5U5Q3 659 aaKnown RBP14.52□□□□□ -0.08
SHROOM3-201ENST00000296043 NUDCQ9Y266 331 aa14.52□□□□□ -0.08
SHROOM3-201ENST00000296043 CCDC39Q9UFE4 941 aa14.52□□□□□ -0.08
SHROOM3-201ENST00000296043 ZHX1Q9UKY1 873 aaPredicted RBP14.52□□□□□ -0.08
SHROOM3-201ENST00000296043 ST18O60284 1047 aa14.52□□□□□ -0.08
SHROOM3-201ENST00000296043 STK11IPQ8N1F8 1099 aa14.52□□□□□ -0.09
SHROOM3-201ENST00000296043 FBXW7Q969H0 707 aa14.52□□□□□ -0.09
SHROOM3-201ENST00000296043 MTUS2Q5JR59 1369 aa14.52□□□□□ -0.09
SHROOM3-201ENST00000296043 SKIDA1Q1XH10 827 aa14.52□□□□□ -0.09
SHROOM3-201ENST00000296043 UQCRHLA0A096LP55 91 aa14.51□□□□□ -0.09
SHROOM3-201ENST00000296043 UQCRHP07919 91 aa14.51□□□□□ -0.09
SHROOM3-201ENST00000296043 FAM161AQ3B820 660 aa14.51□□□□□ -0.09
SHROOM3-201ENST00000296043 MNS1Q8NEH6 495 aa14.51□□□□□ -0.09
SHROOM3-201ENST00000296043 ESF1Q9H501 851 aaKnown RBP14.51□□□□□ -0.09
SHROOM3-201ENST00000296043 ZNF526Q8TF50 670 aaPredicted RBP14.51□□□□□ -0.09
SHROOM3-201ENST00000296043 EEA1Q15075 1411 aa14.51□□□□□ -0.09
SHROOM3-201ENST00000296043 ZMYND15Q9H091 742 aa14.51□□□□□ -0.09
SHROOM3-201ENST00000296043 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.5□□□□□ -0.09
SHROOM3-201ENST00000296043 RUFY1Q96T51 708 aa14.5□□□□□ -0.09
SHROOM3-201ENST00000296043 TSPYL1Q9H0U9 437 aa14.5□□□□□ -0.09
SHROOM3-201ENST00000296043 BAZ1BQ9UIG0 1483 aaKnown RBP14.5□□□□□ -0.09
SHROOM3-201ENST00000296043 HSP90B2PQ58FF3 399 aa14.5□□□□□ -0.09
SHROOM3-201ENST00000296043 BECN2A8MW95 431 aa14.5□□□□□ -0.09
SHROOM3-201ENST00000296043 TRIM6-TRIM34B2RNG4 842 aa14.5□□□□□ -0.09
SHROOM3-201ENST00000296043 E9PSI1 815 aa14.5□□□□□ -0.09
SHROOM3-201ENST00000296043 CHMP4AQ9BY43 222 aa14.5□□□□□ -0.09
SHROOM3-201ENST00000296043 TAF3Q5VWG9 929 aa14.49□□□□□ -0.09
SHROOM3-201ENST00000296043 CHMP3Q9Y3E7 222 aa14.49□□□□□ -0.09
SHROOM3-201ENST00000296043 GOLGA2Q08379 1002 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms