RNA–Protein interactions for RNA: ENST00000295927.3

PTX3-201, Transcript of pentraxin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTX3, Length 1,940 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX3-201ENST00000295927 ZNF777Q9ULD5 760 aaPredicted RBP33.89■■■■□ 3.02
PTX3-201ENST00000295927 CDC42BPBQ9Y5S2 1711 aa33.89■■■■□ 3.02
PTX3-201ENST00000295927 ABCC5O15440 1437 aa33.88■■■■□ 3.01
PTX3-201ENST00000295927 NAIPQ13075 1403 aa33.87■■■■□ 3.01
PTX3-201ENST00000295927 CHIC2Q9UKJ5 165 aa33.87■■■■□ 3.01
PTX3-201ENST00000295927 KCNH8Q96L42 1107 aa33.86■■■■□ 3.01
PTX3-201ENST00000295927 AKNAQ7Z591 1439 aa33.83■■■■□ 3.01
PTX3-201ENST00000295927 GCC2Q8IWJ2 1684 aa33.82■■■■□ 3.01
PTX3-201ENST00000295927 MYO5CQ9NQX4 1742 aa33.82■■■■□ 3.01
PTX3-201ENST00000295927 CLSPNQ9HAW4 1339 aa33.8■■■■□ 3
PTX3-201ENST00000295927 WDR7Q9Y4E6 1490 aa33.79■■■■□ 3
PTX3-201ENST00000295927 RRP7BPQ9NSQ0 103 aa33.79■■■■□ 3
PTX3-201ENST00000295927 CROCC2H7BZ55 1655 aa33.78■■■■□ 3
PTX3-201ENST00000295927 ROCK1Q13464 1354 aa33.76■■■■□ 3
PTX3-201ENST00000295927 SAMD9LQ8IVG5 1584 aa33.76■■■□□ 2.99
PTX3-201ENST00000295927 ARHGAP5Q13017 1502 aa33.74■■■□□ 2.99
PTX3-201ENST00000295927 ASXL2Q76L83 1435 aa33.71■■■□□ 2.99
PTX3-201ENST00000295927 ADGBQ8N7X0 1667 aa33.71■■■□□ 2.99
PTX3-201ENST00000295927 NPM1P06748 294 aaKnown RBP eCLIP33.71■■■□□ 2.99
PTX3-201ENST00000295927 RIMBP3CA6NJZ7 1639 aa33.7■■■□□ 2.99
PTX3-201ENST00000295927 RIMBP3BA6NNM3 1639 aa33.7■■■□□ 2.99
PTX3-201ENST00000295927 RIMBP3Q9UFD9 1639 aa33.7■■■□□ 2.99
PTX3-201ENST00000295927 ARHGEF5Q12774 1597 aa33.68■■■□□ 2.98
PTX3-201ENST00000295927 PLCH2O75038 1416 aa33.68■■■□□ 2.98
PTX3-201ENST00000295927 KDM6BO15054 1643 aa33.66■■■□□ 2.98
PTX3-201ENST00000295927 MAPKBP1O60336 1514 aa33.66■■■□□ 2.98
PTX3-201ENST00000295927 MBD5Q9P267 1494 aa33.65■■■□□ 2.98
PTX3-201ENST00000295927 HNRNPMP52272 730 aaKnown RBP eCLIP33.64■■■□□ 2.98
PTX3-201ENST00000295927 ADGRL2O95490 1459 aa33.64■■■□□ 2.98
PTX3-201ENST00000295927 SHANK2Q9UPX8 1470 aa33.63■■■□□ 2.97
PTX3-201ENST00000295927 ABCA9Q8IUA7 1624 aa33.62■■■□□ 2.97
PTX3-201ENST00000295927 NCOA1Q15788 1441 aa33.61■■■□□ 2.97
PTX3-201ENST00000295927 SYCP2Q9BX26 1530 aa33.59■■■□□ 2.97
PTX3-201ENST00000295927 ARAP3Q8WWN8 1544 aa33.58■■■□□ 2.97
PTX3-201ENST00000295927 PLEKHH2Q8IVE3 1493 aa33.58■■■□□ 2.97
PTX3-201ENST00000295927 CCDC141Q6ZP82 1450 aa33.57■■■□□ 2.97
PTX3-201ENST00000295927 C9orf84Q5VXU9 1444 aa33.57■■■□□ 2.96
PTX3-201ENST00000295927 EFCAB2Q5VUJ9 269 aa33.56■■■□□ 2.96
PTX3-201ENST00000295927 CYB5RLQ6IPT4 315 aa33.56■■■□□ 2.96
PTX3-201ENST00000295927 ANKRD30AQ9BXX3 1397 aa33.55■■■□□ 2.96
PTX3-201ENST00000295927 KIAA1107Q9UPP5 1409 aa33.55■■■□□ 2.96
PTX3-201ENST00000295927 TSPY4P0CV99 314 aa33.55■■■□□ 2.96
PTX3-201ENST00000295927 TSPY10P0CW01 314 aa33.55■■■□□ 2.96
PTX3-201ENST00000295927 RSPH4AQ5TD94 716 aa33.55■■■□□ 2.96
PTX3-201ENST00000295927 ABCC1P33527 1531 aa33.49■■■□□ 2.95
PTX3-201ENST00000295927 ARHGEF12Q9NZN5 1544 aa33.49■■■□□ 2.95
PTX3-201ENST00000295927 TRIM52Q96A61 297 aa33.45■■■□□ 2.95
PTX3-201ENST00000295927 MAST1Q9Y2H9 1570 aa33.45■■■□□ 2.95
PTX3-201ENST00000295927 ACIN1Q9UKV3 1341 aaKnown RBP33.45■■■□□ 2.94
PTX3-201ENST00000295927 FANCAO15360 1455 aa33.41■■■□□ 2.94
PTX3-201ENST00000295927 ANKRD50Q9ULJ7 1429 aa33.39■■■□□ 2.94
PTX3-201ENST00000295927 KIF15Q9NS87 1388 aa33.37■■■□□ 2.93
PTX3-201ENST00000295927 DENND4BO75064 1496 aaPredicted RBP33.35■■■□□ 2.93
PTX3-201ENST00000295927 TRAPPC8Q9Y2L5 1435 aa33.35■■■□□ 2.93
PTX3-201ENST00000295927 SIN3AQ96ST3 1273 aa33.34■■■□□ 2.93
PTX3-201ENST00000295927 MPHOSPH9Q99550 1183 aa33.32■■■□□ 2.92
PTX3-201ENST00000295927 CD109Q6YHK3 1445 aa33.32■■■□□ 2.92
PTX3-201ENST00000295927 PLXNC1O60486 1568 aa33.31■■■□□ 2.92
PTX3-201ENST00000295927 NEUROD1Q13562 356 aa33.28■■■□□ 2.92
PTX3-201ENST00000295927 ADGRL1O94910 1474 aa33.27■■■□□ 2.92
PTX3-201ENST00000295927 CFAP74Q9C0B2 1584 aa33.25■■■□□ 2.91
PTX3-201ENST00000295927 PZPP20742 1482 aa33.24■■■□□ 2.91
PTX3-201ENST00000295927 SCAPERQ9BY12 1400 aa33.23■■■□□ 2.91
PTX3-201ENST00000295927 AFAP1Q8N556 730 aa33.22■■■□□ 2.91
PTX3-201ENST00000295927 SLC4A1APQ9BWU0 796 aaKnown RBP33.2■■■□□ 2.9
PTX3-201ENST00000295927 SPAG9O60271 1321 aaKnown RBP33.19■■■□□ 2.9
PTX3-201ENST00000295927 RTEL1-TNFRSF6BF6WH68 1400 aa33.19■■■□□ 2.9
PTX3-201ENST00000295927 DUOX2Q9NRD8 1548 aa33.18■■■□□ 2.9
PTX3-201ENST00000295927 GLI2P10070 1586 aa33.18■■■□□ 2.9
PTX3-201ENST00000295927 MAP3K4Q9Y6R4 1608 aa33.18■■■□□ 2.9
PTX3-201ENST00000295927 ZFYVE16Q7Z3T8 1539 aa33.18■■■□□ 2.9
PTX3-201ENST00000295927 TIMELESSQ9UNS1 1208 aa33.17■■■□□ 2.9
PTX3-201ENST00000295927 KDM5DQ9BY66 1539 aa33.15■■■□□ 2.9
PTX3-201ENST00000295927 FOXD1Q16676 465 aa33.14■■■□□ 2.9
PTX3-201ENST00000295927 INO80Q9ULG1 1556 aaPredicted RBP33.14■■■□□ 2.9
PTX3-201ENST00000295927 NUP155O75694 1391 aa33.13■■■□□ 2.89
PTX3-201ENST00000295927 ATP7AQ04656 1500 aa33.11■■■□□ 2.89
PTX3-201ENST00000295927 DIP2BQ9P265 1576 aa33.1■■■□□ 2.89
PTX3-201ENST00000295927 NEO1Q92859 1461 aa33.09■■■□□ 2.89
PTX3-201ENST00000295927 ERBINQ96RT1 1412 aa33.09■■■□□ 2.89
PTX3-201ENST00000295927 UNC13BO14795 1591 aa33.08■■■□□ 2.89
PTX3-201ENST00000295927 ANKRD30BQ9BXX2 1392 aa33.08■■■□□ 2.89
PTX3-201ENST00000295927 ZNF518AQ6AHZ1 1483 aa33.07■■■□□ 2.88
PTX3-201ENST00000295927 TONSLQ96HA7 1378 aa33.05■■■□□ 2.88
PTX3-201ENST00000295927 FAM69CQ0P6D2 419 aa33.03■■■□□ 2.88
PTX3-201ENST00000295927 POGZQ7Z3K3 1410 aa33.03■■■□□ 2.88
PTX3-201ENST00000295927 PKD2Q13563 968 aa33.02■■■□□ 2.88
PTX3-201ENST00000295927 KIDINS220Q9ULH0 1771 aa33.01■■■□□ 2.87
PTX3-201ENST00000295927 ZNF316A6NFI3 1004 aaPredicted RBP33■■■□□ 2.87
PTX3-201ENST00000295927 KDM5CP41229 1560 aa33■■■□□ 2.87
PTX3-201ENST00000295927 FAM135AQ9P2D6 1515 aa32.99■■■□□ 2.87
PTX3-201ENST00000295927 MYT1LQ9UL68 1186 aa32.98■■■□□ 2.87
PTX3-201ENST00000295927 PPP1R15AO75807 674 aaPredicted RBP32.96■■■□□ 2.87
PTX3-201ENST00000295927 MAGI2Q86UL8 1455 aa32.96■■■□□ 2.87
PTX3-201ENST00000295927 IQGAP3Q86VI3 1631 aa32.95■■■□□ 2.87
PTX3-201ENST00000295927 RPRD2Q5VT52 1461 aaKnown RBP32.94■■■□□ 2.86
PTX3-201ENST00000295927 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.93■■■□□ 2.86
PTX3-201ENST00000295927 TSPOAP1O95153 1857 aa32.92■■■□□ 2.86
PTX3-201ENST00000295927 HECW2Q9P2P5 1572 aa32.91■■■□□ 2.86
PTX3-201ENST00000295927 MLH3Q9UHC1 1453 aa32.91■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms