RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 RGS3P49796 1198 aa16.44■□□□□ 0.22
PTCD1-201ENST00000292478 ATAD2BQ9ULI0 1458 aa16.44■□□□□ 0.22
PTCD1-201ENST00000292478 SMARCA4P51532 1647 aa16.44■□□□□ 0.22
PTCD1-201ENST00000292478 SENP3-EIF4A1A0A087X0R7 540 aa16.43■□□□□ 0.22
PTCD1-201ENST00000292478 ROCK2O75116 1388 aaKnown RBP16.43■□□□□ 0.22
PTCD1-201ENST00000292478 SRPK2P78362 688 aaKnown RBP16.42■□□□□ 0.22
PTCD1-201ENST00000292478 EIF3AQ14152 1382 aaKnown RBP16.42■□□□□ 0.22
PTCD1-201ENST00000292478 ZRSR1Q15695 479 aaKnown RBP16.41■□□□□ 0.22
PTCD1-201ENST00000292478 B4GALNT3Q6L9W6 998 aa16.4■□□□□ 0.22
PTCD1-201ENST00000292478 CDK11BP21127 795 aaKnown RBP16.4■□□□□ 0.22
PTCD1-201ENST00000292478 HDGFL2Q7Z4V5 671 aaPredicted RBP16.4■□□□□ 0.22
PTCD1-201ENST00000292478 PLEKHG5O94827 1062 aa16.4■□□□□ 0.22
PTCD1-201ENST00000292478 CALD1Q05682 793 aaKnown RBP16.38■□□□□ 0.21
PTCD1-201ENST00000292478 FHOD3Q2V2M9 1422 aa16.37■□□□□ 0.21
PTCD1-201ENST00000292478 IPO8O15397 1037 aaKnown RBP16.37■□□□□ 0.21
PTCD1-201ENST00000292478 HSP90AB1P08238 724 aaKnown RBP16.36■□□□□ 0.21
PTCD1-201ENST00000292478 PTMAP06454 111 aaKnown RBP16.35■□□□□ 0.21
PTCD1-201ENST00000292478 FOXD1Q16676 465 aa16.35■□□□□ 0.21
PTCD1-201ENST00000292478 GGT6Q6P531 493 aa16.35■□□□□ 0.21
PTCD1-201ENST00000292478 OS9Q13438 667 aaPredicted RBP16.34■□□□□ 0.21
PTCD1-201ENST00000292478 HSCBQ8IWL3 235 aa16.33■□□□□ 0.2
PTCD1-201ENST00000292478 LMOD2Q6P5Q4 547 aa16.33■□□□□ 0.2
PTCD1-201ENST00000292478 RCAN3Q9UKA8 241 aa16.32■□□□□ 0.2
PTCD1-201ENST00000292478 MCCP23508 829 aa16.31■□□□□ 0.2
PTCD1-201ENST00000292478 L3MBTL2Q969R5 705 aa16.31■□□□□ 0.2
PTCD1-201ENST00000292478 PDE3BQ13370 1112 aa16.3■□□□□ 0.2
PTCD1-201ENST00000292478 RTF1Q92541 710 aaKnown RBP16.3■□□□□ 0.2
PTCD1-201ENST00000292478 PHLDB1Q86UU1 1377 aa16.3■□□□□ 0.2
PTCD1-201ENST00000292478 CHMP4AQ9BY43 222 aa16.3■□□□□ 0.2
PTCD1-201ENST00000292478 TCERG1O14776 1098 aaKnown RBP16.29■□□□□ 0.2
PTCD1-201ENST00000292478 RWDD1Q9H446 243 aaPredicted RBP16.27■□□□□ 0.2
PTCD1-201ENST00000292478 NLRP13Q86W25 1043 aa16.27■□□□□ 0.2
PTCD1-201ENST00000292478 DHX57Q6P158 1386 aaKnown RBP16.27■□□□□ 0.19
PTCD1-201ENST00000292478 SPAG9O60271 1321 aaKnown RBP16.27■□□□□ 0.19
PTCD1-201ENST00000292478 KCNJ4P48050 445 aa16.26■□□□□ 0.19
PTCD1-201ENST00000292478 FANCD2Q9BXW9 1451 aa16.26■□□□□ 0.19
PTCD1-201ENST00000292478 MLECQ14165 292 aa16.26■□□□□ 0.19
PTCD1-201ENST00000292478 HNRNPMP52272 730 aaKnown RBP eCLIP16.25■□□□□ 0.192e-6■■■■□ 25
PTCD1-201ENST00000292478 GOLGA6L6A8MZA4 724 aa16.25■□□□□ 0.19
PTCD1-201ENST00000292478 U2AF1L5P0DN76 240 aaPredicted RBP16.25■□□□□ 0.19
PTCD1-201ENST00000292478 FGD1P98174 961 aa16.25■□□□□ 0.19
PTCD1-201ENST00000292478 U2AF1Q01081 240 aaKnown RBP eCLIP16.25■□□□□ 0.19
PTCD1-201ENST00000292478 SAFB2Q14151 953 aaKnown RBP eCLIP16.25■□□□□ 0.19
PTCD1-201ENST00000292478 JPH4Q96JJ6 628 aa16.25■□□□□ 0.19
PTCD1-201ENST00000292478 STK26Q9P289 416 aa16.25■□□□□ 0.19
PTCD1-201ENST00000292478 RBM19Q9Y4C8 960 aaKnown RBP16.25■□□□□ 0.19
PTCD1-201ENST00000292478 PTMSP20962 102 aa16.24■□□□□ 0.19
PTCD1-201ENST00000292478 TERF2IPQ9NYB0 399 aa16.24■□□□□ 0.19
PTCD1-201ENST00000292478 KIF3BO15066 747 aa16.24■□□□□ 0.19
PTCD1-201ENST00000292478 L1TD1Q5T7N2 865 aaKnown RBP16.24■□□□□ 0.19
PTCD1-201ENST00000292478 KIF15Q9NS87 1388 aa16.24■□□□□ 0.19
PTCD1-201ENST00000292478 PMFBP1Q8TBY8 1022 aa16.24■□□□□ 0.19
PTCD1-201ENST00000292478 DNTTIP2Q5QJE6 756 aaKnown RBP16.22■□□□□ 0.19
PTCD1-201ENST00000292478 UACAQ9BZF9 1416 aa16.22■□□□□ 0.19
PTCD1-201ENST00000292478 GOLGA2Q08379 1002 aa16.21■□□□□ 0.19
PTCD1-201ENST00000292478 NRDCO43847 1150 aa16.2■□□□□ 0.18
PTCD1-201ENST00000292478 CCDC144AA2RUR9 1427 aa16.19■□□□□ 0.18
PTCD1-201ENST00000292478 RUSC2Q8N2Y8 1516 aa16.19■□□□□ 0.18
PTCD1-201ENST00000292478 MYBBP1AQ9BQG0 1328 aaKnown RBP16.18■□□□□ 0.18
PTCD1-201ENST00000292478 GOLGA6L4A6NEF3 574 aa16.18■□□□□ 0.18
PTCD1-201ENST00000292478 HDAC5Q9UQL6 1122 aa16.17■□□□□ 0.18
PTCD1-201ENST00000292478 LMOD3Q0VAK6 560 aa16.17■□□□□ 0.18
PTCD1-201ENST00000292478 ITPRIPQ8IWB1 547 aa16.16■□□□□ 0.18
PTCD1-201ENST00000292478 WASHC2CQ9Y4E1 1318 aa16.16■□□□□ 0.18
PTCD1-201ENST00000292478 SOX12O15370 315 aa16.16■□□□□ 0.18
PTCD1-201ENST00000292478 NPHP1O15259 732 aa16.15■□□□□ 0.18
PTCD1-201ENST00000292478 KIAA1211Q6ZU35 1233 aa16.14■□□□□ 0.17
PTCD1-201ENST00000292478 GBP4Q96PP9 640 aa16.14■□□□□ 0.17
PTCD1-201ENST00000292478 CUX1P39880 1505 aa16.14■□□□□ 0.17
PTCD1-201ENST00000292478 TRHP20396 242 aaPredicted RBP16.13■□□□□ 0.17
PTCD1-201ENST00000292478 PTPRGP23470 1445 aa16.13■□□□□ 0.17
PTCD1-201ENST00000292478 IGF1RP08069 1367 aa16.12■□□□□ 0.17
PTCD1-201ENST00000292478 STK31Q9BXU1 1019 aa16.12■□□□□ 0.17
PTCD1-201ENST00000292478 CENPJQ9HC77 1338 aaPredicted RBP16.12■□□□□ 0.17
PTCD1-201ENST00000292478 EID1Q9Y6B2 187 aa16.11■□□□□ 0.17
PTCD1-201ENST00000292478 MYOM3Q5VTT5 1437 aa16.11■□□□□ 0.17
PTCD1-201ENST00000292478 HMMRO75330 724 aa16.11■□□□□ 0.17
PTCD1-201ENST00000292478 TPRNQ4KMQ1 711 aa16.11■□□□□ 0.17
PTCD1-201ENST00000292478 NAP1L5Q96NT1 182 aaPredicted RBP16.11■□□□□ 0.17
PTCD1-201ENST00000292478 FGD5Q6ZNL6 1462 aa16.11■□□□□ 0.17
PTCD1-201ENST00000292478 PLCB2Q00722 1185 aa16.11■□□□□ 0.17
PTCD1-201ENST00000292478 SMC4Q9NTJ3 1288 aa16.11■□□□□ 0.17
PTCD1-201ENST00000292478 GAPVD1Q14C86 1478 aa16.11■□□□□ 0.17
PTCD1-201ENST00000292478 NAP1L2Q9ULW6 460 aaPredicted RBP16.1■□□□□ 0.17
PTCD1-201ENST00000292478 ST20-MTHFSA0A0A6YYL1 179 aa16.09■□□□□ 0.17
PTCD1-201ENST00000292478 STAC3Q96MF2 364 aa16.08■□□□□ 0.17
PTCD1-201ENST00000292478 NGEFQ8N5V2 710 aa16.08■□□□□ 0.16
PTCD1-201ENST00000292478 PAK3O75914 559 aaPredicted RBP16.08■□□□□ 0.16
PTCD1-201ENST00000292478 PRKRIP1Q9H875 184 aaPredicted RBP16.07■□□□□ 0.16
PTCD1-201ENST00000292478 USP47Q96K76 1375 aa16.07■□□□□ 0.16
PTCD1-201ENST00000292478 VGFO15240 615 aaPredicted RBP16.07■□□□□ 0.16
PTCD1-201ENST00000292478 CHAF1AQ13111 956 aaPredicted RBP16.07■□□□□ 0.16
PTCD1-201ENST00000292478 NCAPD3P42695 1498 aa16.06■□□□□ 0.16
PTCD1-201ENST00000292478 MSNP26038 577 aaKnown RBP16.06■□□□□ 0.16
PTCD1-201ENST00000292478 DEKP35659 375 aaKnown RBP16.06■□□□□ 0.16
PTCD1-201ENST00000292478 ZBED9Q6R2W3 1325 aa16.06■□□□□ 0.16
PTCD1-201ENST00000292478 PANK3Q9H999 370 aa16.06■□□□□ 0.16
PTCD1-201ENST00000292478 HTATSF1O43719 755 aaKnown RBP16.05■□□□□ 0.16
PTCD1-201ENST00000292478 GPATCH3Q96I76 525 aa16.05■□□□□ 0.16
PTCD1-201ENST00000292478 IPO9Q96P70 1041 aaKnown RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms