RNA–Protein interactions for RNA: ENST00000291547.9

PKNOX1-201, Transcript of PBX/knotted 1 homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PKNOX1, Length 5,003 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-201ENST00000291547 URB2Q14146 1524 aaKnown RBP13.9□□□□□ -0.18
PKNOX1-201ENST00000291547 TSPY4P0CV99 314 aa13.9□□□□□ -0.18
PKNOX1-201ENST00000291547 TSPY10P0CW01 314 aa13.9□□□□□ -0.18
PKNOX1-201ENST00000291547 RSPH6AQ9H0K4 717 aa13.9□□□□□ -0.18
PKNOX1-201ENST00000291547 ABCA10Q8WWZ4 1543 aa13.89□□□□□ -0.19
PKNOX1-201ENST00000291547 FTSJ3Q8IY81 847 aaKnown RBP13.89□□□□□ -0.19
PKNOX1-201ENST00000291547 BIVM-ERCC5R4GMW8 1640 aa13.88□□□□□ -0.19
PKNOX1-201ENST00000291547 PRXQ9BXM0 1461 aa13.88□□□□□ -0.19
PKNOX1-201ENST00000291547 ANO8Q9HCE9 1232 aaPredicted RBP13.87□□□□□ -0.19
PKNOX1-201ENST00000291547 CFDP1Q9UEE9 299 aaPredicted RBP13.87□□□□□ -0.19
PKNOX1-201ENST00000291547 NRDCO43847 1150 aa13.87□□□□□ -0.19
PKNOX1-201ENST00000291547 TULP1O00294 542 aaPredicted RBP13.86□□□□□ -0.19
PKNOX1-201ENST00000291547 KANK4Q5T7N3 995 aaPredicted RBP13.86□□□□□ -0.19
PKNOX1-201ENST00000291547 GOLGA6L6A8MZA4 724 aa13.86□□□□□ -0.19
PKNOX1-201ENST00000291547 HSP90AB1P08238 724 aaKnown RBP13.86□□□□□ -0.19
PKNOX1-201ENST00000291547 CHAF1AQ13111 956 aaPredicted RBP13.85□□□□□ -0.19
PKNOX1-201ENST00000291547 ARID4BQ4LE39 1312 aaPredicted RBP13.85□□□□□ -0.19
PKNOX1-201ENST00000291547 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.85□□□□□ -0.19
PKNOX1-201ENST00000291547 CFAP53Q96M91 514 aa13.84□□□□□ -0.19
PKNOX1-201ENST00000291547 ZBTB7CA1YPR0 619 aa13.84□□□□□ -0.19
PKNOX1-201ENST00000291547 MSNP26038 577 aaKnown RBP13.84□□□□□ -0.19
PKNOX1-201ENST00000291547 CCNB3Q8WWL7 1395 aa13.83□□□□□ -0.2
PKNOX1-201ENST00000291547 B4GALNT3Q6L9W6 998 aa13.83□□□□□ -0.2
PKNOX1-201ENST00000291547 PLEKHG5O94827 1062 aa13.83□□□□□ -0.2
PKNOX1-201ENST00000291547 NEUROD2Q15784 382 aa13.82□□□□□ -0.2
PKNOX1-201ENST00000291547 L1TD1Q5T7N2 865 aaKnown RBP13.82□□□□□ -0.2
PKNOX1-201ENST00000291547 TAOK2Q9UL54 1235 aa13.82□□□□□ -0.2
PKNOX1-201ENST00000291547 FRAT1Q92837 279 aaPredicted RBP13.81□□□□□ -0.2
PKNOX1-201ENST00000291547 SNAPC4Q5SXM2 1469 aa13.8□□□□□ -0.2
PKNOX1-201ENST00000291547 RRP7BPQ9NSQ0 103 aa13.8□□□□□ -0.2
PKNOX1-201ENST00000291547 PODXL2Q9NZ53 605 aa13.8□□□□□ -0.2
PKNOX1-201ENST00000291547 ARHGAP35Q9NRY4 1499 aa13.8□□□□□ -0.2
PKNOX1-201ENST00000291547 C14orf37Q86TY3 774 aa13.8□□□□□ -0.2
PKNOX1-201ENST00000291547 KNSTRNQ9Y448 316 aa13.8□□□□□ -0.2
PKNOX1-201ENST00000291547 SENP3Q9H4L4 574 aaPredicted RBP13.79□□□□□ -0.2
PKNOX1-201ENST00000291547 FGD1P98174 961 aa13.79□□□□□ -0.2
PKNOX1-201ENST00000291547 OSCARQ8IYS5 282 aa13.79□□□□□ -0.2
PKNOX1-201ENST00000291547 GOLGA6L4A6NEF3 574 aa13.78□□□□□ -0.2
PKNOX1-201ENST00000291547 RGL3Q3MIN7 710 aa13.76□□□□□ -0.21
PKNOX1-201ENST00000291547 HSCBQ8IWL3 235 aa13.76□□□□□ -0.21
PKNOX1-201ENST00000291547 PTPRGP23470 1445 aa13.76□□□□□ -0.21
PKNOX1-201ENST00000291547 USP35Q9P2H5 1018 aa13.76□□□□□ -0.21
PKNOX1-201ENST00000291547 KCNJ4P48050 445 aa13.74□□□□□ -0.21
PKNOX1-201ENST00000291547 CUL7Q14999 1698 aa13.74□□□□□ -0.21
PKNOX1-201ENST00000291547 CDCA8Q53HL2 280 aa13.73□□□□□ -0.21
PKNOX1-201ENST00000291547 MAPK8IP3Q9UPT6 1336 aa13.73□□□□□ -0.21
PKNOX1-201ENST00000291547 SPRYD3Q8NCJ5 442 aa13.73□□□□□ -0.21
PKNOX1-201ENST00000291547 DRC7Q8IY82 874 aa13.73□□□□□ -0.21
PKNOX1-201ENST00000291547 ARID3AQ99856 593 aa13.73□□□□□ -0.21
PKNOX1-201ENST00000291547 PNNQ9H307 717 aaKnown RBP13.73□□□□□ -0.21
PKNOX1-201ENST00000291547 NAP1L2Q9ULW6 460 aaPredicted RBP13.73□□□□□ -0.21
PKNOX1-201ENST00000291547 KIF21AQ7Z4S6 1674 aa13.72□□□□□ -0.21
PKNOX1-201ENST00000291547 PRDM2Q13029 1718 aa13.72□□□□□ -0.21
PKNOX1-201ENST00000291547 CHMP4BQ9H444 224 aaKnown RBP13.72□□□□□ -0.21
PKNOX1-201ENST00000291547 ZNF608Q9ULD9 1512 aaPredicted RBP13.71□□□□□ -0.21
PKNOX1-201ENST00000291547 CCDC18Q5T9S5 1454 aa13.71□□□□□ -0.22
PKNOX1-201ENST00000291547 PPP1R15AO75807 674 aaPredicted RBP13.7□□□□□ -0.22
PKNOX1-201ENST00000291547 MS4A1P11836 297 aa13.7□□□□□ -0.22
PKNOX1-201ENST00000291547 CARD11Q9BXL7 1154 aa13.7□□□□□ -0.22
PKNOX1-201ENST00000291547 ARAP1Q96P48 1450 aa13.7□□□□□ -0.22
PKNOX1-201ENST00000291547 EFCAB5A4FU69 1503 aa13.7□□□□□ -0.22
PKNOX1-201ENST00000291547 OS9Q13438 667 aaPredicted RBP13.69□□□□□ -0.22
PKNOX1-201ENST00000291547 NUDCQ9Y266 331 aa13.69□□□□□ -0.22
PKNOX1-201ENST00000291547 MAGI1Q96QZ7 1491 aaPredicted RBP13.68□□□□□ -0.22
PKNOX1-201ENST00000291547 VSIG10Q8N0Z9 540 aa13.68□□□□□ -0.22
PKNOX1-201ENST00000291547 TNNT3P45378 269 aaPredicted RBP13.68□□□□□ -0.22
PKNOX1-201ENST00000291547 SYNJ2O15056 1496 aa13.67□□□□□ -0.22
PKNOX1-201ENST00000291547 KIAA2012Q0VF49 1180 aa13.67□□□□□ -0.22
PKNOX1-201ENST00000291547 CASKIN1Q8WXD9 1431 aa13.66□□□□□ -0.22
PKNOX1-201ENST00000291547 GZF1Q9H116 711 aaPredicted RBP13.66□□□□□ -0.22
PKNOX1-201ENST00000291547 KIAA0586Q9BVV6 1533 aa13.65□□□□□ -0.22
PKNOX1-201ENST00000291547 PRG4Q92954 1404 aaPredicted RBP13.65□□□□□ -0.22
PKNOX1-201ENST00000291547 GRIN2AQ12879 1464 aa13.64□□□□□ -0.23
PKNOX1-201ENST00000291547 IPO9Q96P70 1041 aaKnown RBP13.63□□□□□ -0.23
PKNOX1-201ENST00000291547 MCCP23508 829 aa13.63□□□□□ -0.23
PKNOX1-201ENST00000291547 HSP90AA2PQ14568 343 aaPredicted RBP13.63□□□□□ -0.23
PKNOX1-201ENST00000291547 CCER2I3L3R5 266 aa13.62□□□□□ -0.23
PKNOX1-201ENST00000291547 EFCAB2Q5VUJ9 269 aa13.62□□□□□ -0.23
PKNOX1-201ENST00000291547 CC2D1BQ5T0F9 858 aaKnown RBP13.62□□□□□ -0.23
PKNOX1-201ENST00000291547 IQGAP2Q13576 1575 aa13.62□□□□□ -0.23
PKNOX1-201ENST00000291547 GBP4Q96PP9 640 aa13.62□□□□□ -0.23
PKNOX1-201ENST00000291547 U2SURPO15042 1029 aaKnown RBP13.62□□□□□ -0.23
PKNOX1-201ENST00000291547 SLKQ9H2G2 1235 aaPredicted RBP13.62□□□□□ -0.23
PKNOX1-201ENST00000291547 FYCO1Q9BQS8 1478 aa13.61□□□□□ -0.23
PKNOX1-201ENST00000291547 WDR62O43379 1518 aa13.61□□□□□ -0.23
PKNOX1-201ENST00000291547 SIN3AQ96ST3 1273 aa13.6□□□□□ -0.23
PKNOX1-201ENST00000291547 SETD5Q9C0A6 1442 aa13.6□□□□□ -0.23
PKNOX1-201ENST00000291547 HAP1P54257 671 aaPredicted RBP13.59□□□□□ -0.23
PKNOX1-201ENST00000291547 NCBP3Q53F19 620 aaKnown RBP13.58□□□□□ -0.24
PKNOX1-201ENST00000291547 CYB5RLQ6IPT4 315 aa13.58□□□□□ -0.24
PKNOX1-201ENST00000291547 LRRC9Q6ZRR7 1453 aa13.58□□□□□ -0.24
PKNOX1-201ENST00000291547 PTMSP20962 102 aa13.56□□□□□ -0.24
PKNOX1-201ENST00000291547 CFAP44Q96MT7 982 aa13.56□□□□□ -0.24
PKNOX1-201ENST00000291547 GOLGA6L3A6NEY3 463 aa13.56□□□□□ -0.24
PKNOX1-201ENST00000291547 CLSTN1O94985 981 aa13.55□□□□□ -0.24
PKNOX1-201ENST00000291547 GOLGA2Q08379 1002 aa13.55□□□□□ -0.24
PKNOX1-201ENST00000291547 GNL2Q13823 731 aaKnown RBP13.53□□□□□ -0.24
PKNOX1-201ENST00000291547 TRHP20396 242 aaPredicted RBP13.53□□□□□ -0.24
PKNOX1-201ENST00000291547 HNRNPMP52272 730 aaKnown RBP eCLIP13.53□□□□□ -0.242e-7■□□□□ 11.3
PKNOX1-201ENST00000291547 NPHP1O15259 732 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms