RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 WASHC2CQ9Y4E1 1318 aa23.98■■□□□ 1.43
PCDH1-201ENST00000287008 PAK3O75914 559 aaPredicted RBP23.97■■□□□ 1.43
PCDH1-201ENST00000287008 EID1Q9Y6B2 187 aa23.97■■□□□ 1.43
PCDH1-201ENST00000287008 OS9Q13438 667 aaPredicted RBP23.96■■□□□ 1.43
PCDH1-201ENST00000287008 FHOD3Q2V2M9 1422 aa23.95■■□□□ 1.43
PCDH1-201ENST00000287008 CYB5RLQ6IPT4 315 aa23.95■■□□□ 1.42
PCDH1-201ENST00000287008 NCLP19338 710 aaKnown RBP23.94■■□□□ 1.42
PCDH1-201ENST00000287008 RTF1Q92541 710 aaKnown RBP23.94■■□□□ 1.42
PCDH1-201ENST00000287008 HSPA5P11021 654 aaKnown RBP23.94■■□□□ 1.42
PCDH1-201ENST00000287008 OSCARQ8IYS5 282 aa23.93■■□□□ 1.42
PCDH1-201ENST00000287008 CDK11BP21127 795 aaKnown RBP23.92■■□□□ 1.42
PCDH1-201ENST00000287008 DDRGK1Q96HY6 314 aa23.91■■□□□ 1.42
PCDH1-201ENST00000287008 WIZO95785 1651 aa23.91■■□□□ 1.42
PCDH1-201ENST00000287008 NBR1Q14596 966 aa23.91■■□□□ 1.42
PCDH1-201ENST00000287008 CCDC18Q5T9S5 1454 aa23.91■■□□□ 1.42
PCDH1-201ENST00000287008 FANCD2Q9BXW9 1451 aa23.9■■□□□ 1.42
PCDH1-201ENST00000287008 CSB-PGBD3P0DP91 1061 aa23.9■■□□□ 1.42
PCDH1-201ENST00000287008 GOLGA6L22H0YM25 854 aa23.89■■□□□ 1.41
PCDH1-201ENST00000287008 ROCK2O75116 1388 aaKnown RBP23.89■■□□□ 1.41
PCDH1-201ENST00000287008 PTPRGP23470 1445 aa23.88■■□□□ 1.41
PCDH1-201ENST00000287008 RAB3GAP2Q9H2M9 1393 aa23.87■■□□□ 1.41
PCDH1-201ENST00000287008 GOLGA2Q08379 1002 aa23.87■■□□□ 1.41
PCDH1-201ENST00000287008 RGS3P49796 1198 aa23.85■■□□□ 1.41
PCDH1-201ENST00000287008 KTN1Q86UP2 1357 aaKnown RBP23.84■■□□□ 1.41
PCDH1-201ENST00000287008 U2AF1L5P0DN76 240 aaPredicted RBP23.83■■□□□ 1.41
PCDH1-201ENST00000287008 U2AF1Q01081 240 aaKnown RBP eCLIP23.83■■□□□ 1.41
PCDH1-201ENST00000287008 TERF2IPQ9NYB0 399 aa23.81■■□□□ 1.4
PCDH1-201ENST00000287008 EIF3AQ14152 1382 aaKnown RBP23.8■■□□□ 1.4
PCDH1-201ENST00000287008 FGD1P98174 961 aa23.79■■□□□ 1.4
PCDH1-201ENST00000287008 ZRSR1Q15695 479 aaKnown RBP23.79■■□□□ 1.4
PCDH1-201ENST00000287008 NGDNQ8NEJ9 315 aaKnown RBP23.79■■□□□ 1.4
PCDH1-201ENST00000287008 KCNJ4P48050 445 aa23.79■■□□□ 1.4
PCDH1-201ENST00000287008 PPP4R2Q9NY27 417 aa23.78■■□□□ 1.4
PCDH1-201ENST00000287008 NUTM2DQ5VT03 806 aaPredicted RBP23.78■■□□□ 1.4
PCDH1-201ENST00000287008 ANP32EQ9BTT0 268 aa23.77■■□□□ 1.4
PCDH1-201ENST00000287008 CALD1Q05682 793 aaKnown RBP23.76■■□□□ 1.39
PCDH1-201ENST00000287008 L3MBTL2Q969R5 705 aa23.76■■□□□ 1.39
PCDH1-201ENST00000287008 SMARCA4P51532 1647 aa23.75■■□□□ 1.39
PCDH1-201ENST00000287008 CCER2I3L3R5 266 aa23.75■■□□□ 1.39
PCDH1-201ENST00000287008 CHMP4AQ9BY43 222 aa23.74■■□□□ 1.39
PCDH1-201ENST00000287008 CCDC9Q9Y3X0 531 aaKnown RBP23.73■■□□□ 1.39
PCDH1-201ENST00000287008 IPO8O15397 1037 aaKnown RBP23.71■■□□□ 1.39
PCDH1-201ENST00000287008 RALBP1Q15311 655 aa23.71■■□□□ 1.39
PCDH1-201ENST00000287008 ZNF330Q9Y3S2 320 aaPredicted RBP23.7■■□□□ 1.38
PCDH1-201ENST00000287008 NUTM2FA1L443 756 aa23.68■■□□□ 1.38
PCDH1-201ENST00000287008 TRAK1Q9UPV9 953 aa23.67■■□□□ 1.38
PCDH1-201ENST00000287008 TAOK2Q9UL54 1235 aa23.65■■□□□ 1.38
PCDH1-201ENST00000287008 VGFO15240 615 aaPredicted RBP23.64■■□□□ 1.38
PCDH1-201ENST00000287008 AMPHP49418 695 aa23.64■■□□□ 1.37
PCDH1-201ENST00000287008 NAP1L2Q9ULW6 460 aaPredicted RBP23.63■■□□□ 1.37
PCDH1-201ENST00000287008 GAPVD1Q14C86 1478 aa23.63■■□□□ 1.37
PCDH1-201ENST00000287008 STK31Q9BXU1 1019 aa23.61■■□□□ 1.37
PCDH1-201ENST00000287008 CCDC144AA2RUR9 1427 aa23.61■■□□□ 1.37
PCDH1-201ENST00000287008 B4GALNT3Q6L9W6 998 aa23.6■■□□□ 1.37
PCDH1-201ENST00000287008 TPRNQ4KMQ1 711 aa23.6■■□□□ 1.37
PCDH1-201ENST00000287008 FAM69CQ0P6D2 419 aa23.59■■□□□ 1.37
PCDH1-201ENST00000287008 TRIM44Q96DX7 344 aaPredicted RBP23.57■■□□□ 1.36
PCDH1-201ENST00000287008 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.56■■□□□ 1.36
PCDH1-201ENST00000287008 TULP1O00294 542 aaPredicted RBP23.56■■□□□ 1.36
PCDH1-201ENST00000287008 FGD5Q6ZNL6 1462 aa23.56■■□□□ 1.36
PCDH1-201ENST00000287008 LTV1Q96GA3 475 aaPredicted RBP23.56■■□□□ 1.36
PCDH1-201ENST00000287008 IGF1RP08069 1367 aa23.55■■□□□ 1.36
PCDH1-201ENST00000287008 HSP90AB1P08238 724 aaKnown RBP23.55■■□□□ 1.36
PCDH1-201ENST00000287008 NLRP13Q86W25 1043 aa23.55■■□□□ 1.36
PCDH1-201ENST00000287008 UACAQ9BZF9 1416 aa23.55■■□□□ 1.36
PCDH1-201ENST00000287008 CFAP44Q96MT7 982 aa23.54■■□□□ 1.36
PCDH1-201ENST00000287008 APBB1O00213 710 aa23.54■■□□□ 1.36
PCDH1-201ENST00000287008 MCCP23508 829 aa23.53■■□□□ 1.36
PCDH1-201ENST00000287008 HDAC5Q9UQL6 1122 aa23.53■■□□□ 1.36
PCDH1-201ENST00000287008 RUSC2Q8N2Y8 1516 aa23.52■■□□□ 1.36
PCDH1-201ENST00000287008 LMOD3Q0VAK6 560 aa23.52■■□□□ 1.36
PCDH1-201ENST00000287008 TMX4Q9H1E5 349 aaPredicted RBP23.51■■□□□ 1.35
PCDH1-201ENST00000287008 ST20-MTHFSA0A0A6YYL1 179 aa23.5■■□□□ 1.35
PCDH1-201ENST00000287008 NCAPD3P42695 1498 aa23.5■■□□□ 1.35
PCDH1-201ENST00000287008 PTMAP06454 111 aaKnown RBP23.5■■□□□ 1.35
PCDH1-201ENST00000287008 RCAN3Q9UKA8 241 aa23.49■■□□□ 1.35
PCDH1-201ENST00000287008 RAD54L2Q9Y4B4 1467 aa23.49■■□□□ 1.35
PCDH1-201ENST00000287008 ISY1Q9ULR0 285 aaKnown RBP23.49■■□□□ 1.35
PCDH1-201ENST00000287008 ITPRIPQ8IWB1 547 aa23.48■■□□□ 1.35
PCDH1-201ENST00000287008 KIAA1211Q6ZU35 1233 aa23.46■■□□□ 1.35
PCDH1-201ENST00000287008 EVC2Q86UK5 1308 aa23.45■■□□□ 1.34
PCDH1-201ENST00000287008 SMC4Q9NTJ3 1288 aa23.45■■□□□ 1.34
PCDH1-201ENST00000287008 GOLGA6L4A6NEF3 574 aa23.45■■□□□ 1.34
PCDH1-201ENST00000287008 RWDD1Q9H446 243 aaPredicted RBP23.44■■□□□ 1.34
PCDH1-201ENST00000287008 TAF7LQ5H9L4 462 aa23.43■■□□□ 1.34
PCDH1-201ENST00000287008 HSCBQ8IWL3 235 aa23.43■■□□□ 1.34
PCDH1-201ENST00000287008 AQRO60306 1485 aaKnown RBP eCLIP23.43■■□□□ 1.34
PCDH1-201ENST00000287008 GORABQ5T7V8 394 aa23.43■■□□□ 1.34
PCDH1-201ENST00000287008 COG3Q96JB2 828 aa23.43■■□□□ 1.34
PCDH1-201ENST00000287008 CHMP3Q9Y3E7 222 aa23.42■■□□□ 1.34
PCDH1-201ENST00000287008 MINK1Q8N4C8 1332 aaPredicted RBP23.41■■□□□ 1.34
PCDH1-201ENST00000287008 GTF2E1P29083 439 aaPredicted RBP23.4■■□□□ 1.34
PCDH1-201ENST00000287008 MYOM3Q5VTT5 1437 aa23.4■■□□□ 1.34
PCDH1-201ENST00000287008 HMMRO75330 724 aa23.39■■□□□ 1.34
PCDH1-201ENST00000287008 CCDC146Q8IYE0 955 aa23.39■■□□□ 1.34
PCDH1-201ENST00000287008 PANK3Q9H999 370 aa23.39■■□□□ 1.34
PCDH1-201ENST00000287008 SLC4A10Q6U841 1118 aa23.39■■□□□ 1.33
PCDH1-201ENST00000287008 PLCB2Q00722 1185 aa23.38■■□□□ 1.33
PCDH1-201ENST00000287008 CGNL1Q0VF96 1302 aa23.38■■□□□ 1.33
PCDH1-201ENST00000287008 PHLDB1Q86UU1 1377 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms