RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 TIMELESSQ9UNS1 1208 aa13.94□□□□□ -0.18
TRIM55-201ENST00000276573 DNMT1P26358 1616 aaKnown RBP13.94□□□□□ -0.18
TRIM55-201ENST00000276573 NEUROD1Q13562 356 aa13.94□□□□□ -0.18
TRIM55-201ENST00000276573 GCC2Q8IWJ2 1684 aa13.93□□□□□ -0.18
TRIM55-201ENST00000276573 ZNF777Q9ULD5 760 aaPredicted RBP13.92□□□□□ -0.18
TRIM55-201ENST00000276573 CAMSAP2Q08AD1 1489 aa13.92□□□□□ -0.18
TRIM55-201ENST00000276573 ACIN1Q9UKV3 1341 aaKnown RBP13.92□□□□□ -0.18
TRIM55-201ENST00000276573 ABCC2Q92887 1545 aa13.9□□□□□ -0.18
TRIM55-201ENST00000276573 TRIM52Q96A61 297 aa13.89□□□□□ -0.19
TRIM55-201ENST00000276573 CDC42BPAQ5VT25 1732 aa13.89□□□□□ -0.19
TRIM55-201ENST00000276573 KDM6BO15054 1643 aa13.89□□□□□ -0.19
TRIM55-201ENST00000276573 UHRF1BP1LA0JNW5 1464 aa13.87□□□□□ -0.19
TRIM55-201ENST00000276573 PPP1R15AO75807 674 aaPredicted RBP13.86□□□□□ -0.19
TRIM55-201ENST00000276573 NCOA1Q15788 1441 aa13.86□□□□□ -0.19
TRIM55-201ENST00000276573 MPHOSPH9Q99550 1183 aa13.85□□□□□ -0.19
TRIM55-201ENST00000276573 ADGRL2O95490 1459 aa13.84□□□□□ -0.19
TRIM55-201ENST00000276573 DENND4BO75064 1496 aaPredicted RBP13.83□□□□□ -0.19
TRIM55-201ENST00000276573 KDM5BQ9UGL1 1544 aa13.82□□□□□ -0.2
TRIM55-201ENST00000276573 ANKRD30AQ9BXX3 1397 aa13.82□□□□□ -0.2
TRIM55-201ENST00000276573 HNRNPMP52272 730 aaKnown RBP eCLIP13.82□□□□□ -0.2
TRIM55-201ENST00000276573 CROCC2H7BZ55 1655 aa13.81□□□□□ -0.2
TRIM55-201ENST00000276573 ADGBQ8N7X0 1667 aa13.81□□□□□ -0.2
TRIM55-201ENST00000276573 TSPY4P0CV99 314 aa13.81□□□□□ -0.2
TRIM55-201ENST00000276573 TSPY10P0CW01 314 aa13.81□□□□□ -0.2
TRIM55-201ENST00000276573 OSCARQ8IYS5 282 aa13.81□□□□□ -0.2
TRIM55-201ENST00000276573 CDC42BPBQ9Y5S2 1711 aa13.8□□□□□ -0.2
TRIM55-201ENST00000276573 TONSLQ96HA7 1378 aa13.8□□□□□ -0.2
TRIM55-201ENST00000276573 RSPH4AQ5TD94 716 aa13.8□□□□□ -0.2
TRIM55-201ENST00000276573 KCNH8Q96L42 1107 aa13.8□□□□□ -0.2
TRIM55-201ENST00000276573 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.8□□□□□ -0.2
TRIM55-201ENST00000276573 MBD5Q9P267 1494 aa13.79□□□□□ -0.2
TRIM55-201ENST00000276573 SHANK2Q9UPX8 1470 aa13.79□□□□□ -0.2
TRIM55-201ENST00000276573 ZCCHC11Q5TAX3 1644 aaKnown RBP13.79□□□□□ -0.2
TRIM55-201ENST00000276573 PREX2Q70Z35 1606 aa13.79□□□□□ -0.2
TRIM55-201ENST00000276573 ARHGEF5Q12774 1597 aa13.79□□□□□ -0.2
TRIM55-201ENST00000276573 C9orf84Q5VXU9 1444 aa13.78□□□□□ -0.2
TRIM55-201ENST00000276573 SAMD9LQ8IVG5 1584 aa13.78□□□□□ -0.2
TRIM55-201ENST00000276573 TTC37Q6PGP7 1564 aa13.77□□□□□ -0.2
TRIM55-201ENST00000276573 SLC4A1APQ9BWU0 796 aaKnown RBP13.76□□□□□ -0.21
TRIM55-201ENST00000276573 FOXD1Q16676 465 aa13.75□□□□□ -0.21
TRIM55-201ENST00000276573 ANKRD50Q9ULJ7 1429 aa13.75□□□□□ -0.21
TRIM55-201ENST00000276573 ARHGAP5Q13017 1502 aa13.75□□□□□ -0.21
TRIM55-201ENST00000276573 ANKRD30BQ9BXX2 1392 aa13.74□□□□□ -0.21
TRIM55-201ENST00000276573 MIER1Q8N108 512 aa13.74□□□□□ -0.21
TRIM55-201ENST00000276573 PLCH2O75038 1416 aa13.74□□□□□ -0.21
TRIM55-201ENST00000276573 CCDC141Q6ZP82 1450 aa13.74□□□□□ -0.21
TRIM55-201ENST00000276573 PZPP20742 1482 aa13.73□□□□□ -0.21
TRIM55-201ENST00000276573 KIAA1107Q9UPP5 1409 aa13.73□□□□□ -0.21
TRIM55-201ENST00000276573 MYO5CQ9NQX4 1742 aa13.73□□□□□ -0.21
TRIM55-201ENST00000276573 EFCAB2Q5VUJ9 269 aa13.72□□□□□ -0.21
TRIM55-201ENST00000276573 PLEKHH2Q8IVE3 1493 aa13.72□□□□□ -0.21
TRIM55-201ENST00000276573 KIF15Q9NS87 1388 aa13.71□□□□□ -0.21
TRIM55-201ENST00000276573 SYCP2Q9BX26 1530 aa13.69□□□□□ -0.22
TRIM55-201ENST00000276573 MAST1Q9Y2H9 1570 aa13.68□□□□□ -0.22
TRIM55-201ENST00000276573 PKD2Q13563 968 aa13.68□□□□□ -0.22
TRIM55-201ENST00000276573 L3MBTL2Q969R5 705 aa13.68□□□□□ -0.22
TRIM55-201ENST00000276573 WDR7Q9Y4E6 1490 aa13.68□□□□□ -0.22
TRIM55-201ENST00000276573 NUP155O75694 1391 aa13.67□□□□□ -0.22
TRIM55-201ENST00000276573 RPRD2Q5VT52 1461 aaKnown RBP13.67□□□□□ -0.22
TRIM55-201ENST00000276573 ARHGEF12Q9NZN5 1544 aa13.67□□□□□ -0.22
TRIM55-201ENST00000276573 ARAP3Q8WWN8 1544 aa13.65□□□□□ -0.22
TRIM55-201ENST00000276573 NPM1P06748 294 aaKnown RBP eCLIP13.65□□□□□ -0.22
TRIM55-201ENST00000276573 KDM5DQ9BY66 1539 aa13.64□□□□□ -0.23
TRIM55-201ENST00000276573 ASXL2Q76L83 1435 aa13.63□□□□□ -0.23
TRIM55-201ENST00000276573 HIRIP3Q9BW71 556 aaPredicted RBP13.63□□□□□ -0.23
TRIM55-201ENST00000276573 ABCC1P33527 1531 aa13.62□□□□□ -0.23
TRIM55-201ENST00000276573 TRAPPC8Q9Y2L5 1435 aa13.61□□□□□ -0.23
TRIM55-201ENST00000276573 PLXNC1O60486 1568 aa13.61□□□□□ -0.23
TRIM55-201ENST00000276573 ABCA9Q8IUA7 1624 aa13.61□□□□□ -0.23
TRIM55-201ENST00000276573 DDX10Q13206 875 aaKnown RBP13.6□□□□□ -0.23
TRIM55-201ENST00000276573 TEX14Q8IWB6 1497 aa13.59□□□□□ -0.23
TRIM55-201ENST00000276573 NBPF8Q3BBV2 869 aa13.59□□□□□ -0.23
TRIM55-201ENST00000276573 DUOX2Q9NRD8 1548 aa13.59□□□□□ -0.23
TRIM55-201ENST00000276573 AFAP1Q8N556 730 aa13.58□□□□□ -0.24
TRIM55-201ENST00000276573 SPAG9O60271 1321 aaKnown RBP13.58□□□□□ -0.24
TRIM55-201ENST00000276573 FANCAO15360 1455 aa13.57□□□□□ -0.24
TRIM55-201ENST00000276573 RTEL1-TNFRSF6BF6WH68 1400 aa13.57□□□□□ -0.24
TRIM55-201ENST00000276573 FAM135AQ9P2D6 1515 aa13.56□□□□□ -0.24
TRIM55-201ENST00000276573 CENPBP07199 599 aaPredicted RBP13.56□□□□□ -0.24
TRIM55-201ENST00000276573 HSPA5P11021 654 aaKnown RBP13.56□□□□□ -0.24
TRIM55-201ENST00000276573 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.56□□□□□ -0.24
TRIM55-201ENST00000276573 UNC13BO14795 1591 aa13.56□□□□□ -0.24
TRIM55-201ENST00000276573 ERBINQ96RT1 1412 aa13.55□□□□□ -0.24
TRIM55-201ENST00000276573 EIF4G2P78344 907 aaKnown RBP eCLIP13.55□□□□□ -0.24
TRIM55-201ENST00000276573 SCAPERQ9BY12 1400 aa13.53□□□□□ -0.24
TRIM55-201ENST00000276573 YTHDC1Q96MU7 727 aaKnown RBP13.52□□□□□ -0.25
TRIM55-201ENST00000276573 ADGRL1O94910 1474 aa13.51□□□□□ -0.25
TRIM55-201ENST00000276573 IQGAP3Q86VI3 1631 aa13.5□□□□□ -0.25
TRIM55-201ENST00000276573 CD109Q6YHK3 1445 aa13.5□□□□□ -0.25
TRIM55-201ENST00000276573 ZFYVE16Q7Z3T8 1539 aa13.5□□□□□ -0.25
TRIM55-201ENST00000276573 MAGI2Q86UL8 1455 aa13.5□□□□□ -0.25
TRIM55-201ENST00000276573 ATP7AQ04656 1500 aa13.48□□□□□ -0.25
TRIM55-201ENST00000276573 PLA2R1Q13018 1463 aa13.48□□□□□ -0.25
TRIM55-201ENST00000276573 UHRF1BP1Q6BDS2 1440 aa13.48□□□□□ -0.25
TRIM55-201ENST00000276573 INO80Q9ULG1 1556 aaPredicted RBP13.47□□□□□ -0.25
TRIM55-201ENST00000276573 CYB5RLQ6IPT4 315 aa13.47□□□□□ -0.25
TRIM55-201ENST00000276573 MYT1LQ9UL68 1186 aa13.47□□□□□ -0.25
TRIM55-201ENST00000276573 SPATA31E1Q6ZUB1 1445 aa13.46□□□□□ -0.25
TRIM55-201ENST00000276573 WASHC2AQ641Q2 1341 aa13.46□□□□□ -0.25
TRIM55-201ENST00000276573 DHX29Q7Z478 1369 aaKnown RBP13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms