RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 SETD5Q9C0A6 1442 aa10.12□□□□□ -0.79
LIMD1-201ENST00000273317 EIF4G1Q04637 1599 aaKnown RBP10.11□□□□□ -0.79
LIMD1-201ENST00000273317 GOLGA2Q08379 1002 aa10.11□□□□□ -0.79
LIMD1-201ENST00000273317 RGL3Q3MIN7 710 aa10.1□□□□□ -0.79
LIMD1-201ENST00000273317 KIAA1211Q6ZU35 1233 aa10.09□□□□□ -0.79
LIMD1-201ENST00000273317 CHMP4AQ9BY43 222 aa10.09□□□□□ -0.79
LIMD1-201ENST00000273317 GNL2Q13823 731 aaKnown RBP10.09□□□□□ -0.79
LIMD1-201ENST00000273317 NAP1L2Q9ULW6 460 aaPredicted RBP10.08□□□□□ -0.8
LIMD1-201ENST00000273317 CSPP1Q1MSJ5 1256 aa10.08□□□□□ -0.8
LIMD1-201ENST00000273317 VPS8Q8N3P4 1428 aa10.07□□□□□ -0.8
LIMD1-201ENST00000273317 TCERG1O14776 1098 aaKnown RBP10.07□□□□□ -0.8
LIMD1-201ENST00000273317 TPM4P67936 248 aa10.07□□□□□ -0.8
LIMD1-201ENST00000273317 PDE4CQ08493 712 aa10.07□□□□□ -0.8
LIMD1-201ENST00000273317 SPRYD3Q8NCJ5 442 aa10.07□□□□□ -0.8
LIMD1-201ENST00000273317 PHF14O94880 888 aa10.07□□□□□ -0.8
LIMD1-201ENST00000273317 RALBP1Q15311 655 aa10.07□□□□□ -0.8
LIMD1-201ENST00000273317 PHLDB1Q86UU1 1377 aa10.07□□□□□ -0.8
LIMD1-201ENST00000273317 CCDC34Q96HJ3 373 aa10.07□□□□□ -0.8
LIMD1-201ENST00000273317 ERCC6Q03468 1493 aa10.07□□□□□ -0.8
LIMD1-201ENST00000273317 ANO8Q9HCE9 1232 aaPredicted RBP10.07□□□□□ -0.8
LIMD1-201ENST00000273317 NPHP1O15259 732 aa10.06□□□□□ -0.8
LIMD1-201ENST00000273317 HDGFP51858 240 aaKnown RBP10.06□□□□□ -0.8
LIMD1-201ENST00000273317 NEUROD2Q15784 382 aa10.06□□□□□ -0.8
LIMD1-201ENST00000273317 CC2D1BQ5T0F9 858 aaKnown RBP10.06□□□□□ -0.8
LIMD1-201ENST00000273317 GPATCH3Q96I76 525 aa10.06□□□□□ -0.8
LIMD1-201ENST00000273317 RWDD1Q9H446 243 aaPredicted RBP10.06□□□□□ -0.8
LIMD1-201ENST00000273317 KCNH8Q96L42 1107 aa10.06□□□□□ -0.8
LIMD1-201ENST00000273317 ROCK2O75116 1388 aaKnown RBP10.05□□□□□ -0.8
LIMD1-201ENST00000273317 NOC3LQ8WTT2 800 aaKnown RBP10.05□□□□□ -0.8
LIMD1-201ENST00000273317 B4GALNT3Q6L9W6 998 aa10.05□□□□□ -0.8
LIMD1-201ENST00000273317 U2SURPO15042 1029 aaKnown RBP10.05□□□□□ -0.8
LIMD1-201ENST00000273317 SMARCA2P51531 1590 aa10.05□□□□□ -0.8
LIMD1-201ENST00000273317 MORC1Q86VD1 984 aa10.04□□□□□ -0.8
LIMD1-201ENST00000273317 GOLGA6L1Q8N7Z2 621 aa10.04□□□□□ -0.8
LIMD1-201ENST00000273317 HDAC5Q9UQL6 1122 aa10.03□□□□□ -0.8
LIMD1-201ENST00000273317 FMN1Q68DA7 1419 aa10.03□□□□□ -0.8
LIMD1-201ENST00000273317 PMFBP1Q8TBY8 1022 aa10.02□□□□□ -0.81
LIMD1-201ENST00000273317 FBXO3Q9UK99 471 aa10.02□□□□□ -0.81
LIMD1-201ENST00000273317 GOLGA6L3A6NEY3 463 aa10.01□□□□□ -0.81
LIMD1-201ENST00000273317 RTF1Q92541 710 aaKnown RBP10.01□□□□□ -0.81
LIMD1-201ENST00000273317 RBM19Q9Y4C8 960 aaKnown RBP10.01□□□□□ -0.81
LIMD1-201ENST00000273317 A0A0U1RQG5 324 aaPredicted RBP10.01□□□□□ -0.81
LIMD1-201ENST00000273317 CLSTN1O94985 981 aa10.01□□□□□ -0.81
LIMD1-201ENST00000273317 RCAN3Q9UKA8 241 aa10.01□□□□□ -0.81
LIMD1-201ENST00000273317 DDX11L8A8MPP1 907 aa10□□□□□ -0.81
LIMD1-201ENST00000273317 HDGFL2Q7Z4V5 671 aaPredicted RBP10□□□□□ -0.81
LIMD1-201ENST00000273317 HMMRO75330 724 aa9.99□□□□□ -0.81
LIMD1-201ENST00000273317 CUX2O14529 1486 aa9.99□□□□□ -0.81
LIMD1-201ENST00000273317 TNNT3P45378 269 aaPredicted RBP9.98□□□□□ -0.81
LIMD1-201ENST00000273317 PDE3BQ13370 1112 aa9.98□□□□□ -0.81
LIMD1-201ENST00000273317 DCAF11Q8TEB1 546 aa9.98□□□□□ -0.81
LIMD1-201ENST00000273317 CARMIL1Q5VZK9 1371 aa9.98□□□□□ -0.81
LIMD1-201ENST00000273317 RSPH6AQ9H0K4 717 aa9.97□□□□□ -0.81
LIMD1-201ENST00000273317 ITPRIPQ8IWB1 547 aa9.97□□□□□ -0.81
LIMD1-201ENST00000273317 IPO9Q96P70 1041 aaKnown RBP9.97□□□□□ -0.81
LIMD1-201ENST00000273317 CARMIL2Q6F5E8 1435 aa9.97□□□□□ -0.81
LIMD1-201ENST00000273317 SIN3AQ96ST3 1273 aa9.97□□□□□ -0.81
LIMD1-201ENST00000273317 SRPK2P78362 688 aaKnown RBP9.96□□□□□ -0.81
LIMD1-201ENST00000273317 CHMP4CQ96CF2 233 aa9.96□□□□□ -0.81
LIMD1-201ENST00000273317 SPAG9O60271 1321 aaKnown RBP9.96□□□□□ -0.81
LIMD1-201ENST00000273317 KIF3AQ9Y496 699 aa9.96□□□□□ -0.81
LIMD1-201ENST00000273317 ANKRD30AQ9BXX3 1397 aa9.96□□□□□ -0.82
LIMD1-201ENST00000273317 HSPA5P11021 654 aaKnown RBP9.95□□□□□ -0.82
LIMD1-201ENST00000273317 CCDC18Q5T9S5 1454 aa9.95□□□□□ -0.82
LIMD1-201ENST00000273317 LMOD3Q0VAK6 560 aa9.95□□□□□ -0.82
LIMD1-201ENST00000273317 SETQ01105 290 aaPredicted RBP9.95□□□□□ -0.82
LIMD1-201ENST00000273317 TOP2AP11388 1531 aaKnown RBP9.95□□□□□ -0.82
LIMD1-201ENST00000273317 ST18O60284 1047 aa9.94□□□□□ -0.82
LIMD1-201ENST00000273317 PATL2C9JE40 543 aaKnown RBP9.94□□□□□ -0.82
LIMD1-201ENST00000273317 KIF15Q9NS87 1388 aa9.94□□□□□ -0.82
LIMD1-201ENST00000273317 LMOD2Q6P5Q4 547 aa9.94□□□□□ -0.82
LIMD1-201ENST00000273317 STK31Q9BXU1 1019 aa9.93□□□□□ -0.82
LIMD1-201ENST00000273317 SKOR2Q2VWA4 1001 aaPredicted RBP9.93□□□□□ -0.82
LIMD1-201ENST00000273317 TPM3P06753 285 aa9.93□□□□□ -0.82
LIMD1-201ENST00000273317 KIF16BQ96L93 1317 aa9.92□□□□□ -0.82
LIMD1-201ENST00000273317 UACAQ9BZF9 1416 aa9.92□□□□□ -0.82
LIMD1-201ENST00000273317 HSP90B1P14625 803 aaKnown RBP9.92□□□□□ -0.82
LIMD1-201ENST00000273317 ATP6V1DQ9Y5K8 247 aa9.92□□□□□ -0.82
LIMD1-201ENST00000273317 RAB3GAP2Q9H2M9 1393 aa9.92□□□□□ -0.82
LIMD1-201ENST00000273317 ABCC8Q09428 1581 aa9.91□□□□□ -0.82
LIMD1-201ENST00000273317 SLKQ9H2G2 1235 aaPredicted RBP9.91□□□□□ -0.82
LIMD1-201ENST00000273317 ISY1Q9ULR0 285 aaKnown RBP9.91□□□□□ -0.82
LIMD1-201ENST00000273317 CENPJQ9HC77 1338 aaPredicted RBP9.9□□□□□ -0.82
LIMD1-201ENST00000273317 TERF2IPQ9NYB0 399 aa9.9□□□□□ -0.83
LIMD1-201ENST00000273317 GZF1Q9H116 711 aaPredicted RBP9.89□□□□□ -0.83
LIMD1-201ENST00000273317 CCDC70Q6NSX1 233 aa9.89□□□□□ -0.83
LIMD1-201ENST00000273317 U2AF1L5P0DN76 240 aaPredicted RBP9.89□□□□□ -0.83
LIMD1-201ENST00000273317 U2AF1Q01081 240 aaKnown RBP eCLIP9.89□□□□□ -0.83
LIMD1-201ENST00000273317 PRM3Q9NNZ6 103 aa9.89□□□□□ -0.83
LIMD1-201ENST00000273317 MFAP1P55081 439 aaKnown RBP9.89□□□□□ -0.83
LIMD1-201ENST00000273317 PKD2Q13563 968 aa9.89□□□□□ -0.83
LIMD1-201ENST00000273317 NLRP13Q86W25 1043 aa9.89□□□□□ -0.83
LIMD1-201ENST00000273317 GPS2Q13227 327 aa9.88□□□□□ -0.83
LIMD1-201ENST00000273317 HSP90AA2PQ14568 343 aaPredicted RBP9.88□□□□□ -0.83
LIMD1-201ENST00000273317 SMC4Q9NTJ3 1288 aa9.88□□□□□ -0.83
LIMD1-201ENST00000273317 TPM1P09493 284 aa9.87□□□□□ -0.83
LIMD1-201ENST00000273317 CENPQQ7L2Z9 268 aaPredicted RBP9.87□□□□□ -0.83
LIMD1-201ENST00000273317 TMX4Q9H1E5 349 aaPredicted RBP9.87□□□□□ -0.83
LIMD1-201ENST00000273317 NUP155O75694 1391 aa9.87□□□□□ -0.83
LIMD1-201ENST00000273317 CUX1P39880 1505 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms