RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 DAXXQ9UER7 740 aaPredicted RBP18.4■□□□□ 0.54
LDLR-201ENST00000252444 CFAP53Q96M91 514 aa18.39■□□□□ 0.53
LDLR-201ENST00000252444 MPHOSPH9Q99550 1183 aa18.38■□□□□ 0.53
LDLR-201ENST00000252444 KIF14Q15058 1648 aa18.38■□□□□ 0.53
LDLR-201ENST00000252444 PKD2Q13563 968 aa18.37■□□□□ 0.53
LDLR-201ENST00000252444 WDR43Q15061 677 aaKnown RBP eCLIP18.37■□□□□ 0.53
LDLR-201ENST00000252444 DNAJC5BQ9UF47 199 aa18.37■□□□□ 0.53
LDLR-201ENST00000252444 TMF1P82094 1093 aa18.36■□□□□ 0.53
LDLR-201ENST00000252444 EPRSP07814 1512 aaKnown RBP18.35■□□□□ 0.53
LDLR-201ENST00000252444 PNNQ9H307 717 aaKnown RBP18.34■□□□□ 0.53
LDLR-201ENST00000252444 UGGT2Q9NYU1 1516 aa18.33■□□□□ 0.53
LDLR-201ENST00000252444 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.33■□□□□ 0.52
LDLR-201ENST00000252444 TMC1Q8TDI8 760 aa18.33■□□□□ 0.52
LDLR-201ENST00000252444 HNRNPMP52272 730 aaKnown RBP eCLIP18.32■□□□□ 0.52
LDLR-201ENST00000252444 ROCK2O75116 1388 aaKnown RBP18.32■□□□□ 0.52
LDLR-201ENST00000252444 CANXP27824 592 aaKnown RBP18.32■□□□□ 0.52
LDLR-201ENST00000252444 CNGB1Q14028 1251 aaPredicted RBP18.31■□□□□ 0.52
LDLR-201ENST00000252444 CCDC144AA2RUR9 1427 aa18.31■□□□□ 0.52
LDLR-201ENST00000252444 POGKQ9P215 609 aa18.31■□□□□ 0.52
LDLR-201ENST00000252444 KIF3BO15066 747 aa18.3■□□□□ 0.52
LDLR-201ENST00000252444 KNSTRNQ9Y448 316 aa18.3■□□□□ 0.52
LDLR-201ENST00000252444 PBRM1Q86U86 1689 aa18.29■□□□□ 0.52
LDLR-201ENST00000252444 WASHC2CQ9Y4E1 1318 aa18.29■□□□□ 0.52
LDLR-201ENST00000252444 ABCA5Q8WWZ7 1642 aa18.28■□□□□ 0.52
LDLR-201ENST00000252444 ROCK1Q13464 1354 aa18.28■□□□□ 0.52
LDLR-201ENST00000252444 RGL3Q3MIN7 710 aa18.28■□□□□ 0.52
LDLR-201ENST00000252444 EID1Q9Y6B2 187 aa18.28■□□□□ 0.52
LDLR-201ENST00000252444 PCF11O94913 1555 aaKnown RBP18.27■□□□□ 0.52
LDLR-201ENST00000252444 CYB5RLQ6IPT4 315 aa18.27■□□□□ 0.52
LDLR-201ENST00000252444 GGT6Q6P531 493 aa18.27■□□□□ 0.52
LDLR-201ENST00000252444 EIF4G3O43432 1585 aaKnown RBP18.27■□□□□ 0.52
LDLR-201ENST00000252444 PHLDB1Q86UU1 1377 aa18.27■□□□□ 0.51
LDLR-201ENST00000252444 PLB1Q6P1J6 1458 aa18.27■□□□□ 0.51
LDLR-201ENST00000252444 KIF15Q9NS87 1388 aa18.26■□□□□ 0.51
LDLR-201ENST00000252444 DDX10Q13206 875 aaKnown RBP18.25■□□□□ 0.51
LDLR-201ENST00000252444 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.24■□□□□ 0.51
LDLR-201ENST00000252444 POGZQ7Z3K3 1410 aa18.24■□□□□ 0.51
LDLR-201ENST00000252444 C14orf37Q86TY3 774 aa18.24■□□□□ 0.51
LDLR-201ENST00000252444 ZNF608Q9ULD9 1512 aaPredicted RBP18.23■□□□□ 0.51
LDLR-201ENST00000252444 DCAF11Q8TEB1 546 aa18.23■□□□□ 0.51
LDLR-201ENST00000252444 RAPGEF6Q8TEU7 1601 aa18.23■□□□□ 0.51
LDLR-201ENST00000252444 HFM1A2PYH4 1435 aa18.23■□□□□ 0.51
LDLR-201ENST00000252444 ANKRD50Q9ULJ7 1429 aa18.22■□□□□ 0.51
LDLR-201ENST00000252444 NUDCQ9Y266 331 aa18.22■□□□□ 0.51
LDLR-201ENST00000252444 ITSN2Q9NZM3 1697 aa18.22■□□□□ 0.51
LDLR-201ENST00000252444 FAM69CQ0P6D2 419 aa18.21■□□□□ 0.51
LDLR-201ENST00000252444 PLPPR3Q6T4P5 718 aa18.2■□□□□ 0.5
LDLR-201ENST00000252444 CCDC141Q6ZP82 1450 aa18.18■□□□□ 0.5
LDLR-201ENST00000252444 C9orf84Q5VXU9 1444 aa18.18■□□□□ 0.5
LDLR-201ENST00000252444 VGFO15240 615 aaPredicted RBP18.18■□□□□ 0.5
LDLR-201ENST00000252444 KIAA0556O60303 1618 aa18.18■□□□□ 0.5
LDLR-201ENST00000252444 NUP160Q12769 1436 aa18.18■□□□□ 0.5
LDLR-201ENST00000252444 MRS2Q9HD23 443 aa18.18■□□□□ 0.5
LDLR-201ENST00000252444 TEX14Q8IWB6 1497 aa18.15■□□□□ 0.5
LDLR-201ENST00000252444 DHX57Q6P158 1386 aaKnown RBP18.15■□□□□ 0.5
LDLR-201ENST00000252444 HDGFL2Q7Z4V5 671 aaPredicted RBP18.15■□□□□ 0.5
LDLR-201ENST00000252444 AKNAQ7Z591 1439 aa18.14■□□□□ 0.49
LDLR-201ENST00000252444 PPP6R1Q9UPN7 881 aa18.13■□□□□ 0.49
LDLR-201ENST00000252444 DAPK1P53355 1430 aa18.13■□□□□ 0.49
LDLR-201ENST00000252444 CCER2I3L3R5 266 aa18.13■□□□□ 0.49
LDLR-201ENST00000252444 SIN3AQ96ST3 1273 aa18.12■□□□□ 0.49
LDLR-201ENST00000252444 EIF5BO60841 1220 aaKnown RBP18.11■□□□□ 0.49
LDLR-201ENST00000252444 PTPN23Q9H3S7 1636 aa18.1■□□□□ 0.49
LDLR-201ENST00000252444 MLECQ14165 292 aa18.1■□□□□ 0.49
LDLR-201ENST00000252444 CHMP4BQ9H444 224 aaKnown RBP18.09■□□□□ 0.49
LDLR-201ENST00000252444 SCAPERQ9BY12 1400 aa18.09■□□□□ 0.49
LDLR-201ENST00000252444 TARBP1Q13395 1621 aaKnown RBP18.09■□□□□ 0.49
LDLR-201ENST00000252444 RALBP1Q15311 655 aa18.09■□□□□ 0.49
LDLR-201ENST00000252444 HAP1P54257 671 aaPredicted RBP18.08■□□□□ 0.49
LDLR-201ENST00000252444 CFAP43Q8NDM7 1665 aa18.08■□□□□ 0.48
LDLR-201ENST00000252444 HNRNPUQ00839 825 aaKnown RBP eCLIP18.08■□□□□ 0.48
LDLR-201ENST00000252444 KTN1Q86UP2 1357 aaKnown RBP18.07■□□□□ 0.48
LDLR-201ENST00000252444 CHMP4AQ9BY43 222 aa18.07■□□□□ 0.48
LDLR-201ENST00000252444 CAMSAP2Q08AD1 1489 aa18.06■□□□□ 0.48
LDLR-201ENST00000252444 CDK13Q14004 1512 aaKnown RBP18.06■□□□□ 0.48
LDLR-201ENST00000252444 CD109Q6YHK3 1445 aa18.05■□□□□ 0.48
LDLR-201ENST00000252444 TERF2IPQ9NYB0 399 aa18.05■□□□□ 0.48
LDLR-201ENST00000252444 MS4A1P11836 297 aa18.04■□□□□ 0.48
LDLR-201ENST00000252444 RPGRIP1LQ68CZ1 1315 aa18.04■□□□□ 0.48
LDLR-201ENST00000252444 MAPK8IP3Q9UPT6 1336 aa18.03■□□□□ 0.48
LDLR-201ENST00000252444 MYT1Q01538 1121 aa18.03■□□□□ 0.48
LDLR-201ENST00000252444 KIAA1107Q9UPP5 1409 aa18.02■□□□□ 0.48
LDLR-201ENST00000252444 FAM9BQ8IZU0 186 aa18.01■□□□□ 0.47
LDLR-201ENST00000252444 ABCC2Q92887 1545 aa18.01■□□□□ 0.47
LDLR-201ENST00000252444 HSPA5P11021 654 aaKnown RBP18.01■□□□□ 0.47
LDLR-201ENST00000252444 SRPK2P78362 688 aaKnown RBP18■□□□□ 0.47
LDLR-201ENST00000252444 ADGRL1O94910 1474 aa18■□□□□ 0.47
LDLR-201ENST00000252444 SAMD9Q5K651 1589 aa17.99■□□□□ 0.47
LDLR-201ENST00000252444 CALD1Q05682 793 aaKnown RBP17.99■□□□□ 0.47
LDLR-201ENST00000252444 WDR7Q9Y4E6 1490 aa17.98■□□□□ 0.47
LDLR-201ENST00000252444 DENND4BO75064 1496 aaPredicted RBP17.98■□□□□ 0.47
LDLR-201ENST00000252444 SLC52A1Q9NWF4 448 aa17.97■□□□□ 0.47
LDLR-201ENST00000252444 CFAP74Q9C0B2 1584 aa17.97■□□□□ 0.47
LDLR-201ENST00000252444 L3MBTL2Q969R5 705 aa17.97■□□□□ 0.47
LDLR-201ENST00000252444 SHANK2Q9UPX8 1470 aa17.96■□□□□ 0.47
LDLR-201ENST00000252444 EVC2Q86UK5 1308 aa17.95■□□□□ 0.46
LDLR-201ENST00000252444 NPM2Q86SE8 214 aaKnown RBP17.94■□□□□ 0.46
LDLR-201ENST00000252444 ARHGEF11O15085 1522 aa17.94■□□□□ 0.46
LDLR-201ENST00000252444 PLCH2O75038 1416 aa17.94■□□□□ 0.46
LDLR-201ENST00000252444 MYH16Q9H6N6 1097 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms