RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 UACAQ9BZF9 1416 aa16.43■□□□□ 0.22
USP40-201ENST00000251722 JPH4Q96JJ6 628 aa16.43■□□□□ 0.22
USP40-201ENST00000251722 GOLGA6L22H0YM25 854 aa16.42■□□□□ 0.22
USP40-201ENST00000251722 PTMSP20962 102 aa16.42■□□□□ 0.22
USP40-201ENST00000251722 OSCARQ8IYS5 282 aa16.41■□□□□ 0.22
USP40-201ENST00000251722 WIZO95785 1651 aa16.41■□□□□ 0.22
USP40-201ENST00000251722 ARXQ96QS3 562 aa16.4■□□□□ 0.22
USP40-201ENST00000251722 PKD2Q13563 968 aa16.39■□□□□ 0.21
USP40-201ENST00000251722 HSP90AA2PQ14568 343 aaPredicted RBP16.39■□□□□ 0.21
USP40-201ENST00000251722 MORC1Q86VD1 984 aa16.39■□□□□ 0.21
USP40-201ENST00000251722 NUP155O75694 1391 aa16.39■□□□□ 0.21
USP40-201ENST00000251722 PTPRGP23470 1445 aa16.38■□□□□ 0.21
USP40-201ENST00000251722 PLEKHG5O94827 1062 aa16.38■□□□□ 0.21
USP40-201ENST00000251722 RTF1Q92541 710 aaKnown RBP16.37■□□□□ 0.21
USP40-201ENST00000251722 HDAC5Q9UQL6 1122 aa16.36■□□□□ 0.21
USP40-201ENST00000251722 SUPT16HQ9Y5B9 1047 aaKnown RBP16.36■□□□□ 0.21
USP40-201ENST00000251722 U2SURPO15042 1029 aaKnown RBP16.35■□□□□ 0.21
USP40-201ENST00000251722 NCAPD3P42695 1498 aa16.35■□□□□ 0.21
USP40-201ENST00000251722 KTN1Q86UP2 1357 aaKnown RBP16.35■□□□□ 0.21
USP40-201ENST00000251722 TERF2IPQ9NYB0 399 aa16.34■□□□□ 0.21
USP40-201ENST00000251722 KIF3BO15066 747 aa16.33■□□□□ 0.2
USP40-201ENST00000251722 SENP3Q9H4L4 574 aaPredicted RBP16.33■□□□□ 0.2
USP40-201ENST00000251722 WASHC2CQ9Y4E1 1318 aa16.33■□□□□ 0.2
USP40-201ENST00000251722 ZRSR1Q15695 479 aaKnown RBP16.33■□□□□ 0.2
USP40-201ENST00000251722 GOLGA2Q08379 1002 aa16.32■□□□□ 0.2
USP40-201ENST00000251722 L1TD1Q5T7N2 865 aaKnown RBP16.32■□□□□ 0.2
USP40-201ENST00000251722 LAS1LQ9Y4W2 734 aaKnown RBP16.32■□□□□ 0.2
USP40-201ENST00000251722 RBM19Q9Y4C8 960 aaKnown RBP16.32■□□□□ 0.2
USP40-201ENST00000251722 ROCK2O75116 1388 aaKnown RBP16.31■□□□□ 0.2
USP40-201ENST00000251722 OS9Q13438 667 aaPredicted RBP16.31■□□□□ 0.2
USP40-201ENST00000251722 RALBP1Q15311 655 aa16.31■□□□□ 0.2
USP40-201ENST00000251722 CCER2I3L3R5 266 aa16.3■□□□□ 0.2
USP40-201ENST00000251722 UBE2Q2Q8WVN8 375 aa16.3■□□□□ 0.2
USP40-201ENST00000251722 MPHOSPH9Q99550 1183 aa16.3■□□□□ 0.2
USP40-201ENST00000251722 A0A0U1RQG5 324 aaPredicted RBP16.29■□□□□ 0.2
USP40-201ENST00000251722 IPO8O15397 1037 aaKnown RBP16.29■□□□□ 0.2
USP40-201ENST00000251722 HIRIP3Q9BW71 556 aaPredicted RBP16.29■□□□□ 0.2
USP40-201ENST00000251722 GAPVD1Q14C86 1478 aa16.29■□□□□ 0.2
USP40-201ENST00000251722 MIER1Q8N108 512 aa16.28■□□□□ 0.2
USP40-201ENST00000251722 STAC3Q96MF2 364 aa16.28■□□□□ 0.2
USP40-201ENST00000251722 SIN3AQ96ST3 1273 aa16.27■□□□□ 0.2
USP40-201ENST00000251722 TMX4Q9H1E5 349 aaPredicted RBP16.27■□□□□ 0.19
USP40-201ENST00000251722 FHOD3Q2V2M9 1422 aa16.27■□□□□ 0.19
USP40-201ENST00000251722 CC2D1BQ5T0F9 858 aaKnown RBP16.26■□□□□ 0.19
USP40-201ENST00000251722 TSHZ2Q9NRE2 1034 aa16.26■□□□□ 0.19
USP40-201ENST00000251722 LMOD3Q0VAK6 560 aa16.25■□□□□ 0.19
USP40-201ENST00000251722 CSB-PGBD3P0DP91 1061 aa16.25■□□□□ 0.19
USP40-201ENST00000251722 NEUROD2Q15784 382 aa16.24■□□□□ 0.19
USP40-201ENST00000251722 ANO8Q9HCE9 1232 aaPredicted RBP16.23■□□□□ 0.19
USP40-201ENST00000251722 MCCP23508 829 aa16.22■□□□□ 0.19
USP40-201ENST00000251722 VGFO15240 615 aaPredicted RBP16.22■□□□□ 0.19
USP40-201ENST00000251722 STK26Q9P289 416 aa16.22■□□□□ 0.19
USP40-201ENST00000251722 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.21■□□□□ 0.19
USP40-201ENST00000251722 PHLDB1Q86UU1 1377 aa16.21■□□□□ 0.19
USP40-201ENST00000251722 HNRNPMP52272 730 aaKnown RBP eCLIP16.2■□□□□ 0.184e-6■■□□□ 11.9
USP40-201ENST00000251722 FGD5Q6ZNL6 1462 aa16.2■□□□□ 0.18
USP40-201ENST00000251722 CUX1P39880 1505 aa16.2■□□□□ 0.18
USP40-201ENST00000251722 AMER1Q5JTC6 1135 aaPredicted RBP16.19■□□□□ 0.18
USP40-201ENST00000251722 PPP4R2Q9NY27 417 aa16.19■□□□□ 0.18
USP40-201ENST00000251722 PAK3O75914 559 aaPredicted RBP16.19■□□□□ 0.18
USP40-201ENST00000251722 RAB3GAP2Q9H2M9 1393 aa16.19■□□□□ 0.18
USP40-201ENST00000251722 TNNT3P45378 269 aaPredicted RBP16.19■□□□□ 0.18
USP40-201ENST00000251722 CCDC144AA2RUR9 1427 aa16.19■□□□□ 0.18
USP40-201ENST00000251722 HSPA5P11021 654 aaKnown RBP16.18■□□□□ 0.18
USP40-201ENST00000251722 FGD1P98174 961 aa16.17■□□□□ 0.18
USP40-201ENST00000251722 GRIN2BQ13224 1484 aa16.17■□□□□ 0.18
USP40-201ENST00000251722 FRAT1Q92837 279 aaPredicted RBP16.17■□□□□ 0.18
USP40-201ENST00000251722 KCNJ4P48050 445 aa16.17■□□□□ 0.18
USP40-201ENST00000251722 NGDNQ8NEJ9 315 aaKnown RBP16.16■□□□□ 0.18
USP40-201ENST00000251722 KANK4Q5T7N3 995 aaPredicted RBP16.16■□□□□ 0.18
USP40-201ENST00000251722 MYOM3Q5VTT5 1437 aa16.15■□□□□ 0.18
USP40-201ENST00000251722 GOLGA6L6A8MZA4 724 aa16.14■□□□□ 0.18
USP40-201ENST00000251722 IFT140Q96RY7 1462 aa16.14■□□□□ 0.17
USP40-201ENST00000251722 MRC2Q9UBG0 1479 aa16.14■□□□□ 0.17
USP40-201ENST00000251722 SAFB2Q14151 953 aaKnown RBP eCLIP16.14■□□□□ 0.17
USP40-201ENST00000251722 STK31Q9BXU1 1019 aa16.14■□□□□ 0.17
USP40-201ENST00000251722 PDE4CQ08493 712 aa16.13■□□□□ 0.17
USP40-201ENST00000251722 DNTTIP2Q5QJE6 756 aaKnown RBP16.12■□□□□ 0.17
USP40-201ENST00000251722 USP35Q9P2H5 1018 aa16.12■□□□□ 0.17
USP40-201ENST00000251722 HMGXB3Q12766 1538 aa16.1■□□□□ 0.17
USP40-201ENST00000251722 U2AF1L5P0DN76 240 aaPredicted RBP16.1■□□□□ 0.17
USP40-201ENST00000251722 U2AF1Q01081 240 aaKnown RBP eCLIP16.1■□□□□ 0.17
USP40-201ENST00000251722 CYB5RLQ6IPT4 315 aa16.1■□□□□ 0.17
USP40-201ENST00000251722 NRDCO43847 1150 aa16.1■□□□□ 0.17
USP40-201ENST00000251722 EVC2Q86UK5 1308 aa16.09■□□□□ 0.17
USP40-201ENST00000251722 GPATCH3Q96I76 525 aa16.09■□□□□ 0.17
USP40-201ENST00000251722 SOX12O15370 315 aa16.08■□□□□ 0.16
USP40-201ENST00000251722 CCDC9Q9Y3X0 531 aaKnown RBP16.08■□□□□ 0.16
USP40-201ENST00000251722 HMMRO75330 724 aa16.08■□□□□ 0.16
USP40-201ENST00000251722 MSNP26038 577 aaKnown RBP16.08■□□□□ 0.16
USP40-201ENST00000251722 AMPHP49418 695 aa16.08■□□□□ 0.16
USP40-201ENST00000251722 PDE3BQ13370 1112 aa16.07■□□□□ 0.16
USP40-201ENST00000251722 APPP05067 770 aa16.07■□□□□ 0.16
USP40-201ENST00000251722 IGF1RP08069 1367 aa16.07■□□□□ 0.16
USP40-201ENST00000251722 PLEKHH2Q8IVE3 1493 aa16.07■□□□□ 0.16
USP40-201ENST00000251722 NGEFQ8N5V2 710 aa16.06■□□□□ 0.16
USP40-201ENST00000251722 RWDD1Q9H446 243 aaPredicted RBP16.05■□□□□ 0.16
USP40-201ENST00000251722 SYNJ2O15056 1496 aa16.05■□□□□ 0.16
USP40-201ENST00000251722 KIAA1211Q6ZU35 1233 aa16.05■□□□□ 0.16
USP40-201ENST00000251722 IRX6P78412 446 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms