RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 GNL2Q13823 731 aaKnown RBP7.62□□□□□ -1.19
VPS13D-201ENST00000011700 TCERG1O14776 1098 aaKnown RBP7.62□□□□□ -1.19
VPS13D-201ENST00000011700 DDX11L8A8MPP1 907 aa7.62□□□□□ -1.19
VPS13D-201ENST00000011700 RALBP1Q15311 655 aa7.61□□□□□ -1.19
VPS13D-201ENST00000011700 DRC7Q8IY82 874 aa7.61□□□□□ -1.19
VPS13D-201ENST00000011700 TMX4Q9H1E5 349 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-201ENST00000011700 BCL11AQ9H165 835 aa7.61□□□□□ -1.19
VPS13D-201ENST00000011700 HMMRO75330 724 aa7.6□□□□□ -1.19
VPS13D-201ENST00000011700 SCAPERQ9BY12 1400 aa7.6□□□□□ -1.19
VPS13D-201ENST00000011700 TMF1P82094 1093 aa7.6□□□□□ -1.19
VPS13D-201ENST00000011700 CHMP7Q8WUX9 453 aaPredicted RBP7.6□□□□□ -1.19
VPS13D-201ENST00000011700 KTN1Q86UP2 1357 aaKnown RBP7.6□□□□□ -1.19
VPS13D-201ENST00000011700 DCAF8L1A6NGE4 600 aa7.6□□□□□ -1.19
VPS13D-201ENST00000011700 PDE3BQ13370 1112 aa7.6□□□□□ -1.19
VPS13D-201ENST00000011700 PMFBP1Q8TBY8 1022 aa7.6□□□□□ -1.19
VPS13D-201ENST00000011700 NOM1Q5C9Z4 860 aaKnown RBP7.6□□□□□ -1.19
VPS13D-201ENST00000011700 TSR1Q2NL82 804 aaKnown RBP7.6□□□□□ -1.19
VPS13D-201ENST00000011700 RSPH4AQ5TD94 716 aa7.6□□□□□ -1.19
VPS13D-201ENST00000011700 TPM1P09493 284 aa7.59□□□□□ -1.19
VPS13D-201ENST00000011700 LMOD3Q0VAK6 560 aa7.59□□□□□ -1.19
VPS13D-201ENST00000011700 CDR1P51861 262 aa7.59□□□□□ -1.19
VPS13D-201ENST00000011700 CCNB3Q8WWL7 1395 aa7.59□□□□□ -1.19
VPS13D-201ENST00000011700 HOOK1Q9UJC3 728 aaKnown RBP7.59□□□□□ -1.19
VPS13D-201ENST00000011700 CHGAP10645 457 aaKnown RBP7.59□□□□□ -1.19
VPS13D-201ENST00000011700 OS9Q13438 667 aaPredicted RBP7.59□□□□□ -1.19
VPS13D-201ENST00000011700 MAP7D2Q96T17 732 aa7.58□□□□□ -1.2
VPS13D-201ENST00000011700 ABCC8Q09428 1581 aa7.58□□□□□ -1.2
VPS13D-201ENST00000011700 CCDC18Q5T9S5 1454 aa7.58□□□□□ -1.2
VPS13D-201ENST00000011700 CEP89Q96ST8 783 aa7.58□□□□□ -1.2
VPS13D-201ENST00000011700 SPAG9O60271 1321 aaKnown RBP7.58□□□□□ -1.2
VPS13D-201ENST00000011700 SCAF1Q9H7N4 1312 aaKnown RBP7.58□□□□□ -1.2
VPS13D-201ENST00000011700 PDIA4P13667 645 aaKnown RBP7.58□□□□□ -1.2
VPS13D-201ENST00000011700 RWDD1Q9H446 243 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-201ENST00000011700 RDXP35241 583 aaKnown RBP7.58□□□□□ -1.2
VPS13D-201ENST00000011700 TEX35Q5T0J7 233 aa7.58□□□□□ -1.2
VPS13D-201ENST00000011700 ROCK1Q13464 1354 aa7.58□□□□□ -1.2
VPS13D-201ENST00000011700 ST18O60284 1047 aa7.57□□□□□ -1.2
VPS13D-201ENST00000011700 CUX1P39880 1505 aa7.57□□□□□ -1.2
VPS13D-201ENST00000011700 KIF16BQ96L93 1317 aa7.57□□□□□ -1.2
VPS13D-201ENST00000011700 TPM2P07951 284 aa7.57□□□□□ -1.2
VPS13D-201ENST00000011700 CARMIL2Q6F5E8 1435 aa7.57□□□□□ -1.2
VPS13D-201ENST00000011700 CAGE1Q8TC20 777 aa7.57□□□□□ -1.2
VPS13D-201ENST00000011700 CARD11Q9BXL7 1154 aa7.56□□□□□ -1.2
VPS13D-201ENST00000011700 ACBD3Q9H3P7 528 aa7.56□□□□□ -1.2
VPS13D-201ENST00000011700 CFDP1Q9UEE9 299 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-201ENST00000011700 MYO6Q9UM54 1294 aa7.55□□□□□ -1.2
VPS13D-201ENST00000011700 STAC3Q96MF2 364 aa7.55□□□□□ -1.2
VPS13D-201ENST00000011700 NPHP1O15259 732 aa7.55□□□□□ -1.2
VPS13D-201ENST00000011700 SETD5Q9C0A6 1442 aa7.55□□□□□ -1.2
VPS13D-201ENST00000011700 ANKRD20A12PQ8NF67 263 aa7.55□□□□□ -1.2
VPS13D-201ENST00000011700 IPO7O95373 1038 aaKnown RBP7.55□□□□□ -1.2
VPS13D-201ENST00000011700 IL27Q8NEV9 243 aa7.54□□□□□ -1.2
VPS13D-201ENST00000011700 RTF1Q92541 710 aaKnown RBP7.53□□□□□ -1.2
VPS13D-201ENST00000011700 VPS8Q8N3P4 1428 aa7.53□□□□□ -1.2
VPS13D-201ENST00000011700 DCTN1Q14203 1278 aa7.53□□□□□ -1.2
VPS13D-201ENST00000011700 C14orf37Q86TY3 774 aa7.53□□□□□ -1.2
VPS13D-201ENST00000011700 CWC15Q9P013 229 aaKnown RBP7.53□□□□□ -1.2
VPS13D-201ENST00000011700 ISY1Q9ULR0 285 aaKnown RBP7.52□□□□□ -1.21
VPS13D-201ENST00000011700 TXLNBQ8N3L3 684 aa7.52□□□□□ -1.21
VPS13D-201ENST00000011700 PKNOX2Q96KN3 472 aa7.51□□□□□ -1.21
VPS13D-201ENST00000011700 ARXQ96QS3 562 aa7.51□□□□□ -1.21
VPS13D-201ENST00000011700 CCP110O43303 1012 aa7.51□□□□□ -1.21
VPS13D-201ENST00000011700 POGKQ9P215 609 aa7.51□□□□□ -1.21
VPS13D-201ENST00000011700 ERCC6Q03468 1493 aa7.51□□□□□ -1.21
VPS13D-201ENST00000011700 CAVIN1Q6NZI2 390 aaKnown RBP7.51□□□□□ -1.21
VPS13D-201ENST00000011700 TAF3Q5VWG9 929 aa7.51□□□□□ -1.21
VPS13D-201ENST00000011700 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.5□□□□□ -1.213e-8■■■□□ 18.6
VPS13D-201ENST00000011700 ARGLU1Q9NWB6 273 aaPredicted RBP7.5□□□□□ -1.21
VPS13D-201ENST00000011700 KIF7Q2M1P5 1343 aa7.5□□□□□ -1.21
VPS13D-201ENST00000011700 PLCB2Q00722 1185 aa7.5□□□□□ -1.21
VPS13D-201ENST00000011700 HMGB1P09429 215 aaKnown RBP7.5□□□□□ -1.21
VPS13D-201ENST00000011700 ANKRD30AQ9BXX3 1397 aa7.5□□□□□ -1.21
VPS13D-201ENST00000011700 WASHC2AQ641Q2 1341 aa7.49□□□□□ -1.21
VPS13D-201ENST00000011700 PRDM2Q13029 1718 aa7.49□□□□□ -1.21
VPS13D-201ENST00000011700 REC8O95072 547 aa7.49□□□□□ -1.21
VPS13D-201ENST00000011700 GOLGA6L19H0YKK7 550 aa7.49□□□□□ -1.21
VPS13D-201ENST00000011700 CPLX2Q6PUV4 134 aaKnown RBP7.49□□□□□ -1.21
VPS13D-201ENST00000011700 ZRSR2Q15696 482 aaKnown RBP7.49□□□□□ -1.21
VPS13D-201ENST00000011700 RRP12Q5JTH9 1297 aaKnown RBP7.49□□□□□ -1.21
VPS13D-201ENST00000011700 HDGFL2Q7Z4V5 671 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-201ENST00000011700 NAT10Q9H0A0 1025 aaKnown RBP7.49□□□□□ -1.21
VPS13D-201ENST00000011700 TERF2IPQ9NYB0 399 aa7.49□□□□□ -1.21
VPS13D-201ENST00000011700 HSP90B1P14625 803 aaKnown RBP7.49□□□□□ -1.21
VPS13D-201ENST00000011700 HSP90AA2PQ14568 343 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-201ENST00000011700 PABPN1Q86U42 306 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS13D-201ENST00000011700 AK7Q96M32 723 aa7.48□□□□□ -1.21
VPS13D-201ENST00000011700 ERCC4Q92889 916 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-201ENST00000011700 SMC4Q9NTJ3 1288 aa7.48□□□□□ -1.21
VPS13D-201ENST00000011700 CCDC47Q96A33 483 aaKnown RBP7.48□□□□□ -1.21
VPS13D-201ENST00000011700 STK31Q9BXU1 1019 aa7.48□□□□□ -1.21
VPS13D-201ENST00000011700 KDM2AQ9Y2K7 1162 aa7.48□□□□□ -1.21
VPS13D-201ENST00000011700 P3H3Q8IVL6 736 aa7.47□□□□□ -1.21
VPS13D-201ENST00000011700 TULP1O00294 542 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-201ENST00000011700 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-201ENST00000011700 KRI1Q8N9T8 703 aaKnown RBP7.47□□□□□ -1.21
VPS13D-201ENST00000011700 TOP2AP11388 1531 aaKnown RBP7.47□□□□□ -1.21
VPS13D-201ENST00000011700 HMGB1P1B2RPK0 211 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-201ENST00000011700 CCDC66A2RUB6 948 aa7.47□□□□□ -1.21
VPS13D-201ENST00000011700 KIF15Q9NS87 1388 aa7.47□□□□□ -1.21
VPS13D-201ENST00000011700 SUPT6HQ7KZ85 1726 aaKnown RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms