RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 CHD7Q9P2D1 2997 aa10.91□□□□□ -0.66
PHGDH-228ENST00000641847 PLXNB2O15031 1838 aa10.91□□□□□ -0.66
PHGDH-228ENST00000641847 A0A1W2PRG0 241 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 DCDC2CA8MYV0 355 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 RAD21O60216 631 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 NDUFB10O96000 172 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 PDHBP11177 359 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 SLC4A3P48751 1232 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 CUL4AQ13619 759 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 GRM4Q14833 912 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 LRRC41Q15345 812 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 RAB30Q15771 203 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 ZYXQ15942 572 aaKnown RBP10.9□□□□□ -0.66
PHGDH-228ENST00000641847 TMEM31Q5JXX7 168 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 ANO1Q5XXA6 986 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 GMCL1P1Q8NEA9 526 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 TRPV1Q8NER1 839 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 GOPCQ9HD26 462 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 RBM28Q9NW13 759 aaKnown RBP10.9□□□□□ -0.66
PHGDH-228ENST00000641847 CXXC1Q9P0U4 656 aaPredicted RBP10.9□□□□□ -0.66
PHGDH-228ENST00000641847 DAXXQ9UER7 740 aaPredicted RBP10.9□□□□□ -0.66
PHGDH-228ENST00000641847 TMX2Q9Y320 296 aa10.9□□□□□ -0.66
PHGDH-228ENST00000641847 FRMPD2Q68DX3 1309 aaPredicted RBP10.89□□□□□ -0.67
PHGDH-228ENST00000641847 LTBP2Q14767 1821 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 HSP90AA1P07900 732 aaKnown RBP10.89□□□□□ -0.67
PHGDH-228ENST00000641847 PARP1P09874 1014 aaKnown RBP10.89□□□□□ -0.67
PHGDH-228ENST00000641847 SNHG28P0DPA3 235 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 RARBP10826 455 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 CDC27P30260 824 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 KIF5BP33176 963 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 EPHB4P54760 987 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 PPIGQ13427 754 aaKnown RBP eCLIP10.89□□□□□ -0.676e-8■□□□□ 10.1
PHGDH-228ENST00000641847 CCDC96Q2M329 555 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 SLFN13Q68D06 897 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 TMTC3Q6ZXV5 915 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 FANCBQ8NB91 859 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 NPLOC4Q8TAT6 608 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 DCAF4Q8WV16 495 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 IPO9Q96P70 1041 aaKnown RBP10.89□□□□□ -0.67
PHGDH-228ENST00000641847 MAP3K14Q99558 947 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 MTIF3Q9H2K0 278 aaKnown RBP10.89□□□□□ -0.67
PHGDH-228ENST00000641847 VCPKMTQ9H867 229 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 EMILIN3Q9NT22 766 aa10.89□□□□□ -0.67
PHGDH-228ENST00000641847 ISY1Q9ULR0 285 aaKnown RBP10.89□□□□□ -0.67
PHGDH-228ENST00000641847 CCDC196A0A1B0GTZ2 297 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 F5H6K3 240 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 CPLX1O14810 134 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 DHX16O60231 1041 aaKnown RBP10.88□□□□□ -0.67
PHGDH-228ENST00000641847 PLEKHA8P1O95397 391 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 ADORA2AP29274 412 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 ADD1P35611 737 aaKnown RBP10.88□□□□□ -0.67
PHGDH-228ENST00000641847 KLRC3Q07444 240 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 ZNF543Q08ER8 600 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 SKIV2LQ15477 1246 aaKnown RBP10.88□□□□□ -0.67
PHGDH-228ENST00000641847 ASPRV1Q53RT3 343 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 CPLX2Q6PUV4 134 aaKnown RBP10.88□□□□□ -0.67
PHGDH-228ENST00000641847 SPICE1Q8N0Z3 855 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 SPRYD3Q8NCJ5 442 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 GMCL1Q96IK5 515 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 NUP88Q99567 741 aaPredicted RBP10.88□□□□□ -0.67
PHGDH-228ENST00000641847 LRFN3Q9BTN0 628 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 PBX4Q9BYU1 374 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 KIAA1683Q9H0B3 1180 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 SLC28A3Q9HAS3 691 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 XPNPEP3Q9NQH7 507 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 FAM217BQ9NTX9 383 aaPredicted RBP10.88□□□□□ -0.67
PHGDH-228ENST00000641847 MAD2L2Q9UI95 211 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 PHF24Q9UPV7 400 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.88□□□□□ -0.67
PHGDH-228ENST00000641847 REV3LO60673 3130 aa10.88□□□□□ -0.67
PHGDH-228ENST00000641847 CNTNAP5Q8WYK1 1306 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 PTPDC1A2A3K4 754 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 PALM3A6NDB9 673 aaPredicted RBP10.87□□□□□ -0.67
PHGDH-228ENST00000641847 JAK2O60674 1132 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 CNMDO75829 334 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 CDKL5O76039 1030 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 CTDNEP1O95476 244 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 TIMP1P01033 207 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 GOLGA8HP0CJ92 632 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 BMP3P12645 472 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 ITGB8P26012 769 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 SLC1A4P43007 532 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 PPP2R5BQ15173 497 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 KIAA1755Q5JYT7 1200 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 PSRC1Q6PGN9 363 aaPredicted RBP10.87□□□□□ -0.67
PHGDH-228ENST00000641847 LBX2Q6XYB7 198 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 CATSPERGQ6ZRH7 1159 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 STAG2Q8N3U4 1231 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 TMEM199Q8N511 208 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 NSUN7Q8NE18 718 aaKnown RBP10.87□□□□□ -0.67
PHGDH-228ENST00000641847 INTS4Q96HW7 963 aaKnown RBP10.87□□□□□ -0.67
PHGDH-228ENST00000641847 C12orf42Q96LP6 360 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 TOX2Q96NM4 488 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 LLPHQ9BRT6 129 aaKnown RBP10.87□□□□□ -0.67
PHGDH-228ENST00000641847 HOXC10Q9NYD6 342 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 NRBP1Q9UHY1 535 aa10.87□□□□□ -0.67
PHGDH-228ENST00000641847 MROH7Q68CQ1 1323 aa10.86□□□□□ -0.67
PHGDH-228ENST00000641847 STK36Q9NRP7 1315 aa10.86□□□□□ -0.67
PHGDH-228ENST00000641847 A0A1W2PQ45 241 aaPredicted RBP10.86□□□□□ -0.67
PHGDH-228ENST00000641847 A0A1W2PQY0 241 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms