RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CAPSLQ8WWF8 208 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 FTOQ9C0B1 505 aaKnown RBP eCLIP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 RABEP2Q9H5N1 569 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 MLXIPQ9HAP2 919 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 ACADMP11310 421 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 ANXA13P27216 316 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 IREB2P48200 963 aaKnown RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 HDLBPQ00341 1268 aaKnown RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 FLOT2Q14254 428 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 CDC37Q16543 378 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 TCP11X2Q5H9J9 407 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 TEX11Q8IYF3 940 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 STX19Q8N4C7 294 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 AFAP1Q8N556 730 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 GTF3C2Q8WUA4 911 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 UBLCP1Q8WVY7 318 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-219ENST00000641575 TRIM8Q9BZR9 551 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 NEK6Q9HC98 313 aa3.03□□□□□ -1.92
SCN1A-219ENST00000641575 HNRNPCL2B2RXH8 293 aa3.03□□□□□ -1.93
SCN1A-219ENST00000641575 SEMA3EO15041 775 aa3.03□□□□□ -1.93
SCN1A-219ENST00000641575 HNRNPCL1O60812 293 aaKnown RBP3.03□□□□□ -1.93
SCN1A-219ENST00000641575 RASGRP1O95267 797 aa3.03□□□□□ -1.93
SCN1A-219ENST00000641575 CPA2P48052 419 aa3.03□□□□□ -1.93
SCN1A-219ENST00000641575 KRT17Q04695 432 aa3.03□□□□□ -1.93
SCN1A-219ENST00000641575 TMC4Q7Z404 712 aa3.03□□□□□ -1.93
SCN1A-219ENST00000641575 SCAND2PQ9GZW5 306 aaPredicted RBP3.03□□□□□ -1.93
SCN1A-219ENST00000641575 ATG3Q9NT62 314 aa3.03□□□□□ -1.93
SCN1A-219ENST00000641575 SYNCRIPO60506 623 aaKnown RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 CYBBP04839 570 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 KRT7P08729 469 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 AP1B1Q10567 949 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 UBE3BQ7Z3V4 1068 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 HEATR3Q7Z4Q2 680 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 STAMQ92783 540 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 FAM81BQ96LP2 452 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 GDAP1L1Q96MZ0 367 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 CCDC78A2IDD5 438 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 H0YC42 278 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 GOLGA8MH3BSY2 632 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ELL2O00472 640 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 APOEP02649 317 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 CCT4P50991 539 aaKnown RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ASIC1P78348 528 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 PPP2R3AQ06190 1150 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 TP53BP2Q13625 1128 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 BYSLQ13895 437 aaKnown RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 METTL24Q5JXM2 366 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 PGBD3Q8N328 593 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 SDCCAG3Q96C92 435 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 NUP58Q9BVL2 599 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 SH2B1Q9NRF2 756 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 KIF17Q9P2E2 1029 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 STK39Q9UEW8 545 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 TSC22D4Q9Y3Q8 395 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 NUP155O75694 1391 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 IGBP1P78318 339 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 PRPSAP1Q14558 356 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 PPP6R3Q5H9R7 873 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 PASD1Q8IV76 773 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 VPS37AQ8NEZ2 397 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 GLMNQ92990 594 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 CNKSR1Q969H4 720 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 NRBF2Q96F24 287 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 FAM227BQ96M60 508 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 NACC1Q96RE7 527 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 SLITRK6Q9H5Y7 841 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 MAN1C1Q9NR34 630 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 PDRG1Q9NUG6 133 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 SCOCQ9UIL1 159 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 TRPC6Q9Y210 931 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 MAFGO15525 162 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 BMP10O95393 424 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 UAP1Q16222 522 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 GLE1Q53GS7 698 aaKnown RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 LMBR1LQ6UX01 489 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 DTHD1Q6ZMT9 781 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 GSTA5Q7RTV2 222 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 LINS1Q8NG48 757 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 NKX2-3Q8TAU0 364 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 GOLGA5Q8TBA6 731 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 TBC1D22AQ8WUA7 517 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ARHGAP9Q9BRR9 750 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 FAM129AQ9BZQ8 928 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 NCOA2Q15596 1464 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 BRAFP15056 766 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 DMTNQ08495 405 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 RASIP1Q5U651 963 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 C11orf88Q6PI97 169 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 MAP7D3Q8IWC1 876 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 EXD1Q8NHP7 514 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 PHF21AQ96BD5 680 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 C8orf37Q96NL8 207 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 SH3GL3Q99963 347 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 KIFC3Q9BVG8 833 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 RNF14Q9UBS8 474 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 STK38LQ9Y2H1 464 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 SCN9AQ15858 1988 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 BACH1O14867 736 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 FBXL5Q9UKA1 691 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms