RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 RNF216Q9NWF9 866 aaPredicted RBP22.44■■□□□ 1.18
SYNGAP1-227ENST00000638142 RRP15Q9Y3B9 282 aaKnown RBP22.44■■□□□ 1.18
SYNGAP1-227ENST00000638142 ZNF831Q5JPB2 1677 aa22.44■■□□□ 1.18
SYNGAP1-227ENST00000638142 CAGE1Q8TC20 777 aa22.43■■□□□ 1.18
SYNGAP1-227ENST00000638142 COG1Q8WTW3 980 aa22.43■■□□□ 1.18
SYNGAP1-227ENST00000638142 SECISBP2LQ93073 1101 aaKnown RBP22.43■■□□□ 1.18
SYNGAP1-227ENST00000638142 TMEM47Q9BQJ4 181 aa22.43■■□□□ 1.18
SYNGAP1-227ENST00000638142 HPCAL4Q9UM19 191 aa22.43■■□□□ 1.18
SYNGAP1-227ENST00000638142 TNNT3P45378 269 aaPredicted RBP22.43■■□□□ 1.18
SYNGAP1-227ENST00000638142 LINC00116Q8NCU8 138 aa22.43■■□□□ 1.18
SYNGAP1-227ENST00000638142 VGLL3A8MV65 326 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 CCNT1O60563 726 aaKnown RBP22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 PHACTR2O75167 634 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 IDEP14735 1019 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 HNRNPH3P31942 346 aaKnown RBP22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 NAPAP54920 295 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 ORC2Q13416 577 aaPredicted RBP22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 SPA17Q15506 151 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 GOLGA6L1Q8N7Z2 621 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 FAM204AQ9H8W3 233 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 IRS2Q9Y4H2 1338 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 RNF40O75150 1001 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 LDHBP07195 334 aaKnown RBP22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 GNA11P29992 359 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 LETM2Q2VYF4 491 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 SH3RF3Q8TEJ3 882 aaPredicted RBP22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 CCDC42Q96M95 316 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 C6orf50Q9HD87 102 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 STX8Q9UNK0 236 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 JAG2Q9Y219 1238 aa22.42■■□□□ 1.18
SYNGAP1-227ENST00000638142 KLRF2D3W0D1 207 aa22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 SYF2O95926 243 aaKnown RBP22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 NEK8Q86SG6 692 aa22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 TXNRD3Q86VQ6 643 aa22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 TRIM58Q8NG06 486 aa22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 WDR66Q8TBY9 1149 aa22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 PLAGL2Q9UPG8 496 aa22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 USO1O60763 962 aaKnown RBP22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 BAG3O95817 575 aa22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 FCER1AP12319 257 aa22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 GSTO1P78417 241 aa22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 EEF2KMTQ96G04 330 aa22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 JADE2Q9NQC1 790 aa22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 JRKLQ9Y4A0 524 aa22.41■■□□□ 1.18
SYNGAP1-227ENST00000638142 TRIM66O15016 1216 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 CYP27A1Q02318 531 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 CENPPQ6IPU0 288 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 CCDC70Q6NSX1 233 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 C10orf67Q8IYJ2 551 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 CALML4Q96GE6 196 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 ZNF287Q9HBT7 754 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 DUSP10Q9Y6W6 482 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 MACROD2A1Z1Q3 448 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 PRPF6O94906 941 aaKnown RBP22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 PPP4CP60510 307 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 KIAA0895Q8NCT3 520 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 ZBTB9Q96C00 473 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 CNTNAP4Q9C0A0 1308 aa22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 ZC3H4Q9UPT8 1303 aaKnown RBP22.4■■□□□ 1.18
SYNGAP1-227ENST00000638142 PDE2AO00408 941 aaPredicted RBP22.39■■□□□ 1.18
SYNGAP1-227ENST00000638142 RASA1P20936 1047 aa22.39■■□□□ 1.18
SYNGAP1-227ENST00000638142 ITIH3Q06033 890 aa22.39■■□□□ 1.18
SYNGAP1-227ENST00000638142 CCNI2Q6ZMN8 369 aaPredicted RBP22.39■■□□□ 1.18
SYNGAP1-227ENST00000638142 AFAP1L1Q8TED9 768 aa22.39■■□□□ 1.18
SYNGAP1-227ENST00000638142 RUBCNQ92622 972 aa22.39■■□□□ 1.18
SYNGAP1-227ENST00000638142 SNX12Q9UMY4 172 aa22.39■■□□□ 1.18
SYNGAP1-227ENST00000638142 MTMR7Q9Y216 660 aa22.39■■□□□ 1.18
SYNGAP1-227ENST00000638142 NRAPQ86VF7 1730 aa22.39■■□□□ 1.18
SYNGAP1-227ENST00000638142 ABCB11O95342 1321 aa22.39■■□□□ 1.18
SYNGAP1-227ENST00000638142 SMCO2A6NFE2 343 aa22.39■■□□□ 1.17
SYNGAP1-227ENST00000638142 ZNF263O14978 683 aa22.39■■□□□ 1.17
SYNGAP1-227ENST00000638142 ZNF185O15231 689 aa22.39■■□□□ 1.17
SYNGAP1-227ENST00000638142 TACC1O75410 805 aa22.39■■□□□ 1.17
SYNGAP1-227ENST00000638142 NBPF5PQ86XG9 351 aaPredicted RBP22.39■■□□□ 1.17
SYNGAP1-227ENST00000638142 SETDB2Q96T68 719 aa22.39■■□□□ 1.17
SYNGAP1-227ENST00000638142 MMTAG2Q9BU76 263 aaKnown RBP22.39■■□□□ 1.17
SYNGAP1-227ENST00000638142 SEMA6BQ9H3T3 888 aa22.39■■□□□ 1.17
SYNGAP1-227ENST00000638142 LRWD1Q9UFC0 647 aa22.39■■□□□ 1.17
SYNGAP1-227ENST00000638142 NAV1Q8NEY1 1877 aa22.39■■□□□ 1.17
SYNGAP1-227ENST00000638142 GOLGA8HP0CJ92 632 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 PRLRP16471 622 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 TECP42680 631 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 CCDC96Q2M329 555 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 ZNF572Q7Z3I7 529 aaPredicted RBP22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 SLC44A5Q8NCS7 719 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 CRACR2AQ9BSW2 395 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 KCNQ2O43526 872 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 SMARCA1P28370 1054 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 VWA3BQ502W6 1294 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 SOGA3Q5TF21 947 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 MMGT1Q8N4V1 131 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 CERKQ8TCT0 537 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 RRP36Q96EU6 259 aaKnown RBP22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 IFIH1Q9BYX4 1025 aaKnown RBP22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 SH2D4AQ9H788 454 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 STK17AQ9UEE5 414 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 SIK3Q9Y2K2 1263 aa22.38■■□□□ 1.17
SYNGAP1-227ENST00000638142 COL24A1Q17RW2 1714 aa22.37■■□□□ 1.17
SYNGAP1-227ENST00000638142 LCA5LO95447 670 aa22.37■■□□□ 1.17
SYNGAP1-227ENST00000638142 FGFR1OPO95684 399 aaKnown RBP22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms