RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 PNMA6FA0A0J9YX94 578 aa11.41□□□□□ -0.58
CLN3-261ENST00000637686 GOLGA8AA7E2F4 631 aa11.41□□□□□ -0.58
CLN3-261ENST00000637686 GOLGA8BA8MQT2 603 aa11.41□□□□□ -0.58
CLN3-261ENST00000637686 K7ELQ4 463 aaPredicted RBP11.41□□□□□ -0.58
CLN3-261ENST00000637686 SMARCA1P28370 1054 aa11.41□□□□□ -0.58
CLN3-261ENST00000637686 RCAN1P53805 252 aa11.41□□□□□ -0.58
CLN3-261ENST00000637686 RPS6P62753 249 aaKnown RBP11.41□□□□□ -0.58
CLN3-261ENST00000637686 RTN1Q16799 776 aa11.41□□□□□ -0.58
CLN3-261ENST00000637686 LHX8Q68G74 356 aa11.41□□□□□ -0.58
CLN3-261ENST00000637686 TMTC3Q6ZXV5 915 aa11.41□□□□□ -0.58
CLN3-261ENST00000637686 ARMCX2Q7L311 632 aa11.41□□□□□ -0.58
CLN3-261ENST00000637686 CCDC82Q8N4S0 544 aa11.41□□□□□ -0.58
CLN3-261ENST00000637686 RRP36Q96EU6 259 aaKnown RBP11.41□□□□□ -0.58
CLN3-261ENST00000637686 ZSCAN31Q96LW9 406 aaPredicted RBP11.41□□□□□ -0.58
CLN3-261ENST00000637686 IPO9Q96P70 1041 aaKnown RBP11.41□□□□□ -0.58
CLN3-261ENST00000637686 UPF3BQ9BZI7 483 aaKnown RBP11.41□□□□□ -0.58
CLN3-261ENST00000637686 SH2B1Q9NRF2 756 aaPredicted RBP11.41□□□□□ -0.58
CLN3-261ENST00000637686 RBM28Q9NW13 759 aaKnown RBP11.41□□□□□ -0.58
CLN3-261ENST00000637686 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.41□□□□□ -0.58
CLN3-261ENST00000637686 DDX20Q9UHI6 824 aaKnown RBP11.41□□□□□ -0.58
CLN3-261ENST00000637686 PCDHA1Q9Y5I3 950 aa11.41□□□□□ -0.58
CLN3-261ENST00000637686 DDX49Q9Y6V7 483 aaKnown RBP11.41□□□□□ -0.58
CLN3-261ENST00000637686 ASTN1O14525 1302 aa11.4□□□□□ -0.58
CLN3-261ENST00000637686 hCG_1642624A0A1W2PR95 340 aa11.4□□□□□ -0.58
CLN3-261ENST00000637686 SEPT4O43236 478 aa11.4□□□□□ -0.58
CLN3-261ENST00000637686 ZNF865P0CJ78 1059 aaPredicted RBP11.4□□□□□ -0.58
CLN3-261ENST00000637686 MLLT1Q03111 559 aaPredicted RBP11.4□□□□□ -0.58
CLN3-261ENST00000637686 ANO1Q5XXA6 986 aa11.4□□□□□ -0.58
CLN3-261ENST00000637686 MCF2L2Q86YR7 1114 aa11.4□□□□□ -0.58
CLN3-261ENST00000637686 RGS22Q8NE09 1264 aa11.4□□□□□ -0.58
CLN3-261ENST00000637686 NRBP1Q9UHY1 535 aa11.4□□□□□ -0.58
CLN3-261ENST00000637686 ZHX1Q9UKY1 873 aaPredicted RBP11.4□□□□□ -0.58
CLN3-261ENST00000637686 LIMCH1Q9UPQ0 1083 aa11.4□□□□□ -0.58
CLN3-261ENST00000637686 CNPY2Q9Y2B0 182 aa11.4□□□□□ -0.58
CLN3-261ENST00000637686 ASB14A6NK59 587 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 OPLAHO14841 1288 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 MSCO60682 206 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 CFBP00751 764 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 CDC27P30260 824 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 METAP2P50579 478 aaKnown RBP eCLIP11.39□□□□□ -0.59
CLN3-261ENST00000637686 ALDH5A1P51649 535 aaPredicted RBP11.39□□□□□ -0.59
CLN3-261ENST00000637686 AK2P54819 239 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 TRAF1Q13077 416 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 ACVR2BQ13705 512 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 TOB2Q14106 344 aaPredicted RBP11.39□□□□□ -0.59
CLN3-261ENST00000637686 SYTL5Q8TDW5 730 aaPredicted RBP11.39□□□□□ -0.59
CLN3-261ENST00000637686 ZNF274Q96GC6 653 aaPredicted RBP11.39□□□□□ -0.59
CLN3-261ENST00000637686 LARP6Q9BRS8 491 aaKnown RBP11.39□□□□□ -0.59
CLN3-261ENST00000637686 ABHD16BQ9H3Z7 469 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 FAM217BQ9NTX9 383 aaPredicted RBP11.39□□□□□ -0.59
CLN3-261ENST00000637686 COL20A1Q9P218 1284 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 ADD3Q9UEY8 706 aaKnown RBP11.39□□□□□ -0.59
CLN3-261ENST00000637686 SEC63Q9UGP8 760 aaKnown RBP11.39□□□□□ -0.59
CLN3-261ENST00000637686 OGDHLQ9ULD0 1010 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 NID2Q14112 1375 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 LCTP09848 1927 aa11.39□□□□□ -0.59
CLN3-261ENST00000637686 MCM3APO60318 1980 aa11.38□□□□□ -0.59
CLN3-261ENST00000637686 FARP2O94887 1054 aaPredicted RBP11.38□□□□□ -0.59
CLN3-261ENST00000637686 CAPN2P17655 700 aa11.38□□□□□ -0.59
CLN3-261ENST00000637686 ADD1P35611 737 aaKnown RBP11.38□□□□□ -0.59
CLN3-261ENST00000637686 FUT2Q10981 343 aa11.38□□□□□ -0.59
CLN3-261ENST00000637686 CUL4AQ13619 759 aa11.38□□□□□ -0.59
CLN3-261ENST00000637686 PPP2R5BQ15173 497 aa11.38□□□□□ -0.59
CLN3-261ENST00000637686 EEPD1Q7L9B9 569 aa11.38□□□□□ -0.59
CLN3-261ENST00000637686 MORC4Q8TE76 937 aa11.38□□□□□ -0.59
CLN3-261ENST00000637686 INTS4Q96HW7 963 aaKnown RBP11.38□□□□□ -0.59
CLN3-261ENST00000637686 TAAR1Q96RJ0 339 aa11.38□□□□□ -0.59
CLN3-261ENST00000637686 MAF1Q9H063 256 aa11.38□□□□□ -0.59
CLN3-261ENST00000637686 KATNBL1Q9H079 304 aa11.38□□□□□ -0.59
CLN3-261ENST00000637686 FAM184BQ9ULE4 1060 aa11.38□□□□□ -0.59
CLN3-261ENST00000637686 MKI67P46013 3256 aaKnown RBP11.38□□□□□ -0.59
CLN3-261ENST00000637686 CNTNAP5Q8WYK1 1306 aa11.37□□□□□ -0.59
CLN3-261ENST00000637686 CCDC196A0A1B0GTZ2 297 aa11.37□□□□□ -0.59
CLN3-261ENST00000637686 CD2BP2O95400 341 aaKnown RBP11.37□□□□□ -0.59
CLN3-261ENST00000637686 RARBP10826 455 aa11.37□□□□□ -0.59
CLN3-261ENST00000637686 AKR1A1P14550 325 aa11.37□□□□□ -0.59
CLN3-261ENST00000637686 PDIA3P30101 505 aaKnown RBP11.37□□□□□ -0.59
CLN3-261ENST00000637686 HOXA13P31271 388 aaPredicted RBP11.37□□□□□ -0.59
CLN3-261ENST00000637686 MNX1P50219 401 aaPredicted RBP11.37□□□□□ -0.59
CLN3-261ENST00000637686 HSD17B4P51659 736 aa11.37□□□□□ -0.59
CLN3-261ENST00000637686 UBE2Q1Q7Z7E8 422 aa11.37□□□□□ -0.59
CLN3-261ENST00000637686 DNERQ8NFT8 737 aa11.37□□□□□ -0.59
CLN3-261ENST00000637686 DIS3LQ8TF46 1054 aaKnown RBP11.37□□□□□ -0.59
CLN3-261ENST00000637686 LENG1Q96BZ8 264 aaPredicted RBP11.37□□□□□ -0.59
CLN3-261ENST00000637686 PAWRQ96IZ0 340 aaKnown RBP11.37□□□□□ -0.59
CLN3-261ENST00000637686 TMX3Q96JJ7 454 aa11.37□□□□□ -0.59
CLN3-261ENST00000637686 DAXXQ9UER7 740 aaPredicted RBP11.37□□□□□ -0.59
CLN3-261ENST00000637686 V9GY48 417 aaPredicted RBP11.37□□□□□ -0.59
CLN3-261ENST00000637686 LOC102724159A0A0B4J2E5 919 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 GCOM1H8Y6P7 765 aaPredicted RBP11.36□□□□□ -0.59
CLN3-261ENST00000637686 MYCNP04198 464 aaPredicted RBP11.36□□□□□ -0.59
CLN3-261ENST00000637686 POLR2MP0CAP2 368 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 CCT2P78371 535 aaKnown RBP11.36□□□□□ -0.59
CLN3-261ENST00000637686 GHRHRQ02643 423 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 PWP2Q15269 919 aaKnown RBP11.36□□□□□ -0.59
CLN3-261ENST00000637686 CCDC144BQ3MJ40 725 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 GJC2Q5T442 439 aaPredicted RBP11.36□□□□□ -0.59
CLN3-261ENST00000637686 ARHGEF16Q5VV41 709 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 TAPT1Q6NXT6 567 aa11.36□□□□□ -0.59
CLN3-261ENST00000637686 HEATR3Q7Z4Q2 680 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms