RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 USP38Q8NB14 1042 aa21.05■□□□□ 0.96
CIITA-215ENST00000637439 TMEM47Q9BQJ4 181 aa21.05■□□□□ 0.96
CIITA-215ENST00000637439 WDR11Q9BZH6 1224 aa21.05■□□□□ 0.96
CIITA-215ENST00000637439 PRDM12Q9H4Q4 367 aa21.05■□□□□ 0.96
CIITA-215ENST00000637439 ZMYM6O95789 1325 aa21.04■□□□□ 0.96
CIITA-215ENST00000637439 UMODL1Q5DID0 1318 aa21.04■□□□□ 0.96
CIITA-215ENST00000637439 PTPDC1A2A3K4 754 aa21.04■□□□□ 0.96
CIITA-215ENST00000637439 PCP11498 1178 aaKnown RBP21.04■□□□□ 0.96
CIITA-215ENST00000637439 PDE1AP54750 535 aa21.04■□□□□ 0.96
CIITA-215ENST00000637439 CCL23P55773 120 aa21.04■□□□□ 0.96
CIITA-215ENST00000637439 PSMC6P62333 389 aa21.04■□□□□ 0.96
CIITA-215ENST00000637439 BRDTQ58F21 947 aaPredicted RBP21.04■□□□□ 0.96
CIITA-215ENST00000637439 TTC14Q96N46 770 aa21.04■□□□□ 0.96
CIITA-215ENST00000637439 PURBQ96QR8 312 aaKnown RBP21.04■□□□□ 0.96
CIITA-215ENST00000637439 ALDH8A1Q9H2A2 487 aaPredicted RBP21.04■□□□□ 0.96
CIITA-215ENST00000637439 SLC28A3Q9HAS3 691 aa21.04■□□□□ 0.96
CIITA-215ENST00000637439 CXXC1Q9P0U4 656 aaPredicted RBP21.04■□□□□ 0.96
CIITA-215ENST00000637439 CHD9Q3L8U1 2897 aa21.03■□□□□ 0.96
CIITA-215ENST00000637439 RBM47A0AV96 593 aaKnown RBP21.03■□□□□ 0.96
CIITA-215ENST00000637439 NFIBO00712 420 aa21.03■□□□□ 0.96
CIITA-215ENST00000637439 PTGS1P23219 599 aa21.03■□□□□ 0.96
CIITA-215ENST00000637439 TMEM63BQ5T3F8 832 aa21.03■□□□□ 0.96
CIITA-215ENST00000637439 OTOP2Q7RTS6 562 aa21.03■□□□□ 0.96
CIITA-215ENST00000637439 WNT8AQ9H1J5 351 aa21.03■□□□□ 0.96
CIITA-215ENST00000637439 GPCPD1Q9NPB8 672 aa21.03■□□□□ 0.96
CIITA-215ENST00000637439 GPHNQ9NQX3 736 aaPredicted RBP21.03■□□□□ 0.96
CIITA-215ENST00000637439 FRMPD2Q68DX3 1309 aaPredicted RBP21.03■□□□□ 0.96
CIITA-215ENST00000637439 B4DLN1 442 aa21.02■□□□□ 0.96
CIITA-215ENST00000637439 NKRFO15226 690 aaKnown RBP eCLIP21.02■□□□□ 0.96
CIITA-215ENST00000637439 PFKMP08237 780 aa21.02■□□□□ 0.96
CIITA-215ENST00000637439 HSPD1P10809 573 aaKnown RBP21.02■□□□□ 0.96
CIITA-215ENST00000637439 MRPL12P52815 198 aaKnown RBP21.02■□□□□ 0.96
CIITA-215ENST00000637439 RNF207Q6ZRF8 634 aa21.02■□□□□ 0.96
CIITA-215ENST00000637439 ATXN2LQ8WWM7 1075 aaKnown RBP21.02■□□□□ 0.96
CIITA-215ENST00000637439 PRDM6Q9NQX0 595 aa21.02■□□□□ 0.96
CIITA-215ENST00000637439 SLC4A7Q9Y6M7 1214 aa21.02■□□□□ 0.96
CIITA-215ENST00000637439 RAD50Q92878 1312 aa21.02■□□□□ 0.95
CIITA-215ENST00000637439 PDHBP11177 359 aa21.01■□□□□ 0.95
CIITA-215ENST00000637439 CALML3P27482 149 aa21.01■□□□□ 0.95
CIITA-215ENST00000637439 PURAQ00577 322 aaKnown RBP21.01■□□□□ 0.95
CIITA-215ENST00000637439 PDE4DQ08499 809 aa21.01■□□□□ 0.95
CIITA-215ENST00000637439 MFSD6Q6ZSS7 791 aa21.01■□□□□ 0.95
CIITA-215ENST00000637439 DNERQ8NFT8 737 aa21.01■□□□□ 0.95
CIITA-215ENST00000637439 OR6J1Q8NGC5 347 aa21.01■□□□□ 0.95
CIITA-215ENST00000637439 PPM1EQ8WY54 764 aa21.01■□□□□ 0.95
CIITA-215ENST00000637439 FAM227BQ96M60 508 aa21.01■□□□□ 0.95
CIITA-215ENST00000637439 MTG1Q9BT17 334 aaPredicted RBP21.01■□□□□ 0.95
CIITA-215ENST00000637439 NKX2-4Q9H2Z4 354 aa21.01■□□□□ 0.95
CIITA-215ENST00000637439 TTC28Q96AY4 2481 aa21.01■□□□□ 0.95
CIITA-215ENST00000637439 WDR19Q8NEZ3 1342 aa21.01■□□□□ 0.95
CIITA-215ENST00000637439 A0A0D9SFI3 127 aa21■□□□□ 0.95
CIITA-215ENST00000637439 KPNA6O60684 536 aa21■□□□□ 0.95
CIITA-215ENST00000637439 MYL3P08590 195 aa21■□□□□ 0.95
CIITA-215ENST00000637439 MFAP1P55081 439 aaKnown RBP21■□□□□ 0.95
CIITA-215ENST00000637439 RRP1P56182 461 aaKnown RBP21■□□□□ 0.95
CIITA-215ENST00000637439 ZNF543Q08ER8 600 aa21■□□□□ 0.95
CIITA-215ENST00000637439 HDAC1Q13547 482 aaPredicted RBP21■□□□□ 0.95
CIITA-215ENST00000637439 SLC30A10Q6XR72 485 aa21■□□□□ 0.95
CIITA-215ENST00000637439 CLEC4DQ8WXI8 215 aa21■□□□□ 0.95
CIITA-215ENST00000637439 RNF41Q9H4P4 317 aaPredicted RBP21■□□□□ 0.95
CIITA-215ENST00000637439 THEGQ9P2T0 379 aa21■□□□□ 0.95
CIITA-215ENST00000637439 PCDHA11Q9Y5I1 949 aa21■□□□□ 0.95
CIITA-215ENST00000637439 GBF1Q92538 1859 aa21■□□□□ 0.95
CIITA-215ENST00000637439 TNKSO95271 1327 aa21■□□□□ 0.95
CIITA-215ENST00000637439 MYO9BQ13459 2157 aa20.99■□□□□ 0.95
CIITA-215ENST00000637439 SNHG28P0DPA3 235 aa20.99■□□□□ 0.95
CIITA-215ENST00000637439 NT5C2P49902 561 aa20.99■□□□□ 0.95
CIITA-215ENST00000637439 RPS6P62753 249 aaKnown RBP20.99■□□□□ 0.95
CIITA-215ENST00000637439 PPP2R5BQ15173 497 aa20.99■□□□□ 0.95
CIITA-215ENST00000637439 GPATCH4Q5T3I0 446 aaKnown RBP20.99■□□□□ 0.95
CIITA-215ENST00000637439 SCFD2Q8WU76 684 aa20.99■□□□□ 0.95
CIITA-215ENST00000637439 SCLYQ96I15 445 aa20.99■□□□□ 0.95
CIITA-215ENST00000637439 MAF1Q9H063 256 aa20.99■□□□□ 0.95
CIITA-215ENST00000637439 YBX2Q9Y2T7 364 aaKnown RBP20.99■□□□□ 0.95
CIITA-215ENST00000637439 CCDC171Q6TFL3 1326 aa20.99■□□□□ 0.95
CIITA-215ENST00000637439 ZBBXA8MT70 800 aa20.98■□□□□ 0.95
CIITA-215ENST00000637439 TNFRSF10AO00220 468 aa20.98■□□□□ 0.95
CIITA-215ENST00000637439 IGFBP4P22692 258 aa20.98■□□□□ 0.95
CIITA-215ENST00000637439 EDNRBP24530 442 aa20.98■□□□□ 0.95
CIITA-215ENST00000637439 NMIQ13287 307 aaPredicted RBP20.98■□□□□ 0.95
CIITA-215ENST00000637439 ADGRE1Q14246 886 aa20.98■□□□□ 0.95
CIITA-215ENST00000637439 TRMT13Q9NUP7 481 aaKnown RBP20.98■□□□□ 0.95
CIITA-215ENST00000637439 CYP2C9P11712 490 aa20.97■□□□□ 0.95
CIITA-215ENST00000637439 ACTN1P12814 892 aa20.97■□□□□ 0.95
CIITA-215ENST00000637439 ATP2A2P16615 1042 aaKnown RBP20.97■□□□□ 0.95
CIITA-215ENST00000637439 RFC2P35250 354 aa20.97■□□□□ 0.95
CIITA-215ENST00000637439 HAND2P61296 217 aa20.97■□□□□ 0.95
CIITA-215ENST00000637439 PTPN11Q06124 597 aaPredicted RBP20.97■□□□□ 0.95
CIITA-215ENST00000637439 PPP2R2DQ66LE6 453 aa20.97■□□□□ 0.95
CIITA-215ENST00000637439 NFRKBQ6P4R8 1299 aa20.97■□□□□ 0.95
CIITA-215ENST00000637439 ZNF589Q86UQ0 364 aaPredicted RBP20.97■□□□□ 0.95
CIITA-215ENST00000637439 RGS22Q8NE09 1264 aa20.97■□□□□ 0.95
CIITA-215ENST00000637439 ESR2Q92731 530 aa20.97■□□□□ 0.95
CIITA-215ENST00000637439 A6NJR5 290 aa20.96■□□□□ 0.95
CIITA-215ENST00000637439 TRIM6-TRIM34B2RNG4 842 aa20.96■□□□□ 0.95
CIITA-215ENST00000637439 MRPS5P82675 430 aaKnown RBP20.96■□□□□ 0.95
CIITA-215ENST00000637439 NBPF20Q3BBV1 942 aa20.96■□□□□ 0.95
CIITA-215ENST00000637439 CCDC178Q5BJE1 867 aa20.96■□□□□ 0.95
CIITA-215ENST00000637439 FAM47CQ5HY64 1035 aa20.96■□□□□ 0.95
CIITA-215ENST00000637439 ASB2Q96Q27 587 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms