RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 PRDM12Q9H4Q4 367 aa19.41■□□□□ 0.7
CLN3-255ENST00000637100 MSRAQ9UJ68 235 aa19.41■□□□□ 0.7
CLN3-255ENST00000637100 PNMA2Q9UL42 364 aa19.41■□□□□ 0.7
CLN3-255ENST00000637100 YBX2Q9Y2T7 364 aaKnown RBP19.41■□□□□ 0.7
CLN3-255ENST00000637100 RANBP6O60518 1105 aaKnown RBP19.4■□□□□ 0.7
CLN3-255ENST00000637100 PURAQ00577 322 aaKnown RBP19.4■□□□□ 0.7
CLN3-255ENST00000637100 SYDE2Q5VT97 1194 aa19.4■□□□□ 0.7
CLN3-255ENST00000637100 NSMFQ6X4W1 530 aa19.4■□□□□ 0.7
CLN3-255ENST00000637100 KIAA1211Q6ZU35 1233 aa19.4■□□□□ 0.7
CLN3-255ENST00000637100 RPUSD2Q8IZ73 545 aaKnown RBP19.4■□□□□ 0.7
CLN3-255ENST00000637100 TTC14Q96N46 770 aa19.4■□□□□ 0.7
CLN3-255ENST00000637100 MAF1Q9H063 256 aa19.4■□□□□ 0.7
CLN3-255ENST00000637100 POLR3EQ9NVU0 708 aa19.4■□□□□ 0.7
CLN3-255ENST00000637100 NFIBO00712 420 aa19.39■□□□□ 0.69
CLN3-255ENST00000637100 PSMC6P62333 389 aa19.39■□□□□ 0.69
CLN3-255ENST00000637100 EEPD1Q7L9B9 569 aa19.39■□□□□ 0.69
CLN3-255ENST00000637100 WDR11Q9BZH6 1224 aa19.39■□□□□ 0.69
CLN3-255ENST00000637100 WDR19Q8NEZ3 1342 aa19.39■□□□□ 0.69
CLN3-255ENST00000637100 PFKMP08237 780 aa19.38■□□□□ 0.69
CLN3-255ENST00000637100 SUPT20HL2P0C7V6 817 aa19.38■□□□□ 0.69
CLN3-255ENST00000637100 PDHBP11177 359 aa19.38■□□□□ 0.69
CLN3-255ENST00000637100 PCP11498 1178 aaKnown RBP19.38■□□□□ 0.69
CLN3-255ENST00000637100 POU3F3P20264 500 aaPredicted RBP19.38■□□□□ 0.69
CLN3-255ENST00000637100 SLC16A2P36021 539 aa19.38■□□□□ 0.69
CLN3-255ENST00000637100 PDE1AP54750 535 aa19.38■□□□□ 0.69
CLN3-255ENST00000637100 CCL23P55773 120 aa19.38■□□□□ 0.69
CLN3-255ENST00000637100 RGS22Q8NE09 1264 aa19.38■□□□□ 0.69
CLN3-255ENST00000637100 ISY1Q9ULR0 285 aaKnown RBP19.38■□□□□ 0.69
CLN3-255ENST00000637100 PCDHA11Q9Y5I1 949 aa19.38■□□□□ 0.69
CLN3-255ENST00000637100 SCN10AQ9Y5Y9 1956 aa19.37■□□□□ 0.69
CLN3-255ENST00000637100 TRANK1O15050 2925 aa19.37■□□□□ 0.69
CLN3-255ENST00000637100 A6NJR5 290 aa19.37■□□□□ 0.69
CLN3-255ENST00000637100 NKRFO15226 690 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN3-255ENST00000637100 CPT1AP50416 773 aa19.37■□□□□ 0.69
CLN3-255ENST00000637100 MCMDC2Q4G0Z9 681 aa19.37■□□□□ 0.69
CLN3-255ENST00000637100 OTOP2Q7RTS6 562 aa19.37■□□□□ 0.69
CLN3-255ENST00000637100 DNERQ8NFT8 737 aa19.37■□□□□ 0.69
CLN3-255ENST00000637100 CHMP4CQ96CF2 233 aa19.37■□□□□ 0.69
CLN3-255ENST00000637100 ASB2Q96Q27 587 aa19.37■□□□□ 0.69
CLN3-255ENST00000637100 NKX2-4Q9H2Z4 354 aa19.37■□□□□ 0.69
CLN3-255ENST00000637100 SLC28A3Q9HAS3 691 aa19.37■□□□□ 0.69
CLN3-255ENST00000637100 A0A0D9SFI3 127 aa19.36■□□□□ 0.69
CLN3-255ENST00000637100 TNFRSF10AO00220 468 aa19.36■□□□□ 0.69
CLN3-255ENST00000637100 HSPD1P10809 573 aaKnown RBP19.36■□□□□ 0.69
CLN3-255ENST00000637100 PTPN11Q06124 597 aaPredicted RBP19.36■□□□□ 0.69
CLN3-255ENST00000637100 ZNF543Q08ER8 600 aa19.36■□□□□ 0.69
CLN3-255ENST00000637100 HDAC1Q13547 482 aaPredicted RBP19.36■□□□□ 0.69
CLN3-255ENST00000637100 CCDC96Q2M329 555 aa19.36■□□□□ 0.69
CLN3-255ENST00000637100 FAM227BQ96M60 508 aa19.36■□□□□ 0.69
CLN3-255ENST00000637100 MTG1Q9BT17 334 aaPredicted RBP19.36■□□□□ 0.69
CLN3-255ENST00000637100 SLC4A7Q9Y6M7 1214 aa19.36■□□□□ 0.69
CLN3-255ENST00000637100 GBF1Q92538 1859 aa19.35■□□□□ 0.69
CLN3-255ENST00000637100 TNKSO95271 1327 aa19.35■□□□□ 0.69
CLN3-255ENST00000637100 MYO9BQ13459 2157 aa19.35■□□□□ 0.69
CLN3-255ENST00000637100 KPNA6O60684 536 aa19.35■□□□□ 0.69
CLN3-255ENST00000637100 NT5C2P49902 561 aa19.35■□□□□ 0.69
CLN3-255ENST00000637100 RPS6P62753 249 aaKnown RBP19.35■□□□□ 0.69
CLN3-255ENST00000637100 NFRKBQ6P4R8 1299 aa19.35■□□□□ 0.69
CLN3-255ENST00000637100 SLC30A10Q6XR72 485 aa19.35■□□□□ 0.69
CLN3-255ENST00000637100 SCLYQ96I15 445 aa19.35■□□□□ 0.69
CLN3-255ENST00000637100 TRMT13Q9NUP7 481 aaKnown RBP19.35■□□□□ 0.69
CLN3-255ENST00000637100 THEGQ9P2T0 379 aa19.35■□□□□ 0.69
CLN3-255ENST00000637100 BDP1A6H8Y1 2624 aa19.34■□□□□ 0.69
CLN3-255ENST00000637100 PITPNM1O00562 1244 aa19.34■□□□□ 0.69
CLN3-255ENST00000637100 RFC2P35250 354 aa19.34■□□□□ 0.69
CLN3-255ENST00000637100 ANKRD45Q5TZF3 282 aa19.34■□□□□ 0.69
CLN3-255ENST00000637100 RNF207Q6ZRF8 634 aa19.34■□□□□ 0.69
CLN3-255ENST00000637100 SCFD2Q8WU76 684 aa19.34■□□□□ 0.69
CLN3-255ENST00000637100 GPCPD1Q9NPB8 672 aa19.34■□□□□ 0.69
CLN3-255ENST00000637100 NCOR1O75376 2440 aa19.33■□□□□ 0.69
CLN3-255ENST00000637100 CYP2C9P11712 490 aa19.33■□□□□ 0.68
CLN3-255ENST00000637100 MRPS5P82675 430 aaKnown RBP19.33■□□□□ 0.68
CLN3-255ENST00000637100 TTLL4Q14679 1199 aa19.33■□□□□ 0.68
CLN3-255ENST00000637100 NBPF20Q3BBV1 942 aa19.33■□□□□ 0.68
CLN3-255ENST00000637100 CCDC62Q6P9F0 684 aa19.33■□□□□ 0.68
CLN3-255ENST00000637100 ZNF589Q86UQ0 364 aaPredicted RBP19.33■□□□□ 0.68
CLN3-255ENST00000637100 PHOSPHO2Q8TCD6 241 aa19.33■□□□□ 0.68
CLN3-255ENST00000637100 ANKS1AQ92625 1134 aa19.33■□□□□ 0.68
CLN3-255ENST00000637100 FRMPD2Q68DX3 1309 aaPredicted RBP19.32■□□□□ 0.68
CLN3-255ENST00000637100 PTPDC1A2A3K4 754 aa19.32■□□□□ 0.68
CLN3-255ENST00000637100 ATP2A2P16615 1042 aaKnown RBP19.32■□□□□ 0.68
CLN3-255ENST00000637100 RABGGTBP53611 331 aa19.32■□□□□ 0.68
CLN3-255ENST00000637100 GPATCH4Q5T3I0 446 aaKnown RBP19.32■□□□□ 0.68
CLN3-255ENST00000637100 DGKHQ86XP1 1220 aa19.32■□□□□ 0.68
CLN3-255ENST00000637100 OR6J1Q8NGC5 347 aa19.32■□□□□ 0.68
CLN3-255ENST00000637100 MYOGP15173 224 aa19.31■□□□□ 0.68
CLN3-255ENST00000637100 CALML3P27482 149 aa19.31■□□□□ 0.68
CLN3-255ENST00000637100 NMIQ13287 307 aaPredicted RBP19.31■□□□□ 0.68
CLN3-255ENST00000637100 PPP2R5BQ15173 497 aa19.31■□□□□ 0.68
CLN3-255ENST00000637100 BRDTQ58F21 947 aaPredicted RBP19.31■□□□□ 0.68
CLN3-255ENST00000637100 SESTD1Q86VW0 696 aa19.31■□□□□ 0.68
CLN3-255ENST00000637100 MTMR7Q9Y216 660 aa19.31■□□□□ 0.68
CLN3-255ENST00000637100 REV3LO60673 3130 aa19.31■□□□□ 0.68
CLN3-255ENST00000637100 CCDC171Q6TFL3 1326 aa19.3■□□□□ 0.68
CLN3-255ENST00000637100 MYL3P08590 195 aa19.3■□□□□ 0.68
CLN3-255ENST00000637100 IQCF3P0C7M6 154 aa19.3■□□□□ 0.68
CLN3-255ENST00000637100 RRP1P56182 461 aaKnown RBP19.3■□□□□ 0.68
CLN3-255ENST00000637100 PDE4DQ08499 809 aa19.3■□□□□ 0.68
CLN3-255ENST00000637100 RBL2Q08999 1139 aa19.3■□□□□ 0.68
CLN3-255ENST00000637100 PPP2R2DQ66LE6 453 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms