RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 SMARCE1Q969G3 411 aa12.97□□□□□ -0.33
CLN6-217ENST00000636964 TRMT1Q9NXH9 659 aaKnown RBP12.97□□□□□ -0.33
CLN6-217ENST00000636964 HOOK1Q9UJC3 728 aaKnown RBP12.97□□□□□ -0.33
CLN6-217ENST00000636964 A0A1W2PRG0 241 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 NFKBIEO00221 500 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 EGFRP00533 1210 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 LMOD1P29536 600 aaPredicted RBP12.96□□□□□ -0.33
CLN6-217ENST00000636964 ECE1P42892 770 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 ADCY7P51828 1080 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 ERCC6LQ2NKX8 1250 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 HSP90AA4PQ58FG1 418 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 CIAPIN1Q6FI81 312 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 KRT25Q7Z3Z0 450 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 NEK11Q8NG66 645 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 PAGE5Q96GU1 130 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 ERO1AQ96HE7 468 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 ATRNL1Q5VV63 1379 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 TAL1P17542 331 aaPredicted RBP12.96□□□□□ -0.33
CLN6-217ENST00000636964 KARSQ15046 597 aaKnown RBP12.96□□□□□ -0.33
CLN6-217ENST00000636964 SPDYE2Q495Y8 402 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 DTHD1Q6ZMT9 781 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.96□□□□□ -0.33
CLN6-217ENST00000636964 FAM151AQ8WW52 585 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 MKL1Q969V6 931 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 BLZF1Q9H2G9 400 aa12.96□□□□□ -0.33
CLN6-217ENST00000636964 WNT10BO00744 389 aa12.96□□□□□ -0.34
CLN6-217ENST00000636964 ZBTB5O15062 677 aa12.96□□□□□ -0.34
CLN6-217ENST00000636964 CLCN6P51797 869 aa12.96□□□□□ -0.34
CLN6-217ENST00000636964 RASSF7Q02833 373 aa12.96□□□□□ -0.34
CLN6-217ENST00000636964 PIK3R5Q8WYR1 880 aa12.96□□□□□ -0.34
CLN6-217ENST00000636964 SGSM3Q96HU1 749 aa12.96□□□□□ -0.34
CLN6-217ENST00000636964 CNTNAP1P78357 1384 aa12.96□□□□□ -0.34
CLN6-217ENST00000636964 NDUFB10O96000 172 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 NCAPHQ15003 741 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 NEK8Q86SG6 692 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 CCDC84Q86UT8 332 aaPredicted RBP12.95□□□□□ -0.34
CLN6-217ENST00000636964 CCDC125Q86Z20 511 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 RASSF8Q8NHQ8 419 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 ACER1Q8TDN7 264 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 UIMC1Q96RL1 719 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 LCMT1Q9UIC8 334 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 TNNI2P48788 182 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 ZYXQ15942 572 aaKnown RBP12.95□□□□□ -0.34
CLN6-217ENST00000636964 QRICH1Q2TAL8 776 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 ARL6IP4Q66PJ3 421 aaKnown RBP12.95□□□□□ -0.34
CLN6-217ENST00000636964 AGBL3Q8NEM8 1001 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 TMEM232C9JQI7 657 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 ATP1A3P13637 1013 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 KANK3Q6NY19 840 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 GJA3Q9Y6H8 435 aa12.95□□□□□ -0.34
CLN6-217ENST00000636964 GREB1LQ9C091 1923 aaPredicted RBP12.95□□□□□ -0.34
CLN6-217ENST00000636964 USP17L15C9J2P7 530 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 USP17L13C9JLJ4 530 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 USP17L11C9JVI0 530 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 USP17L18D6R9N7 530 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 USP17L22D6RA61 530 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 USP17L17D6RBQ6 530 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 USP17L19D6RCP7 530 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 USP17L20D6RJB6 530 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 PNMA6AP0CW24 399 aaPredicted RBP12.94□□□□□ -0.34
CLN6-217ENST00000636964 SARSP49591 514 aaKnown RBP12.94□□□□□ -0.34
CLN6-217ENST00000636964 USP17L24Q0WX57 530 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 PTPN14Q15678 1187 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 USP17L6PQ6QN14 398 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 MYOZ2Q9NPC6 264 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 PCDHA1Q9Y5I3 950 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 MYO1BO43795 1136 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 TECP42680 631 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 CDC37Q16543 378 aaPredicted RBP12.94□□□□□ -0.34
CLN6-217ENST00000636964 USH1GQ495M9 461 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 POTEDQ86YR6 584 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 TRMT44Q8IYL2 757 aaKnown RBP12.94□□□□□ -0.34
CLN6-217ENST00000636964 SMYD4Q8IYR2 804 aaPredicted RBP12.94□□□□□ -0.34
CLN6-217ENST00000636964 IQUBQ8NA54 791 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 BPIFA3Q9BQP9 254 aa12.94□□□□□ -0.34
CLN6-217ENST00000636964 ESYT2A0FGR8 921 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 NEMFO60524 1076 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 SMC2O95347 1197 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 TDP2O95551 362 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 LONP1P36776 959 aaKnown RBP12.93□□□□□ -0.34
CLN6-217ENST00000636964 E2F4Q16254 413 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 KIAA1755Q5JYT7 1200 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 CCAR2Q8N163 923 aaKnown RBP12.93□□□□□ -0.34
CLN6-217ENST00000636964 NLGN2Q8NFZ4 835 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 DCAF4Q8WV16 495 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 MTRQ99707 1265 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 NCAPGQ9BPX3 1015 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 VPS33BQ9H267 617 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 PSTPIP2Q9H939 334 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 HERC5Q9UII4 1024 aaKnown RBP12.93□□□□□ -0.34
CLN6-217ENST00000636964 PSME4Q14997 1843 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 ZRANB2O95218 330 aaKnown RBP eCLIP12.93□□□□□ -0.34
CLN6-217ENST00000636964 SLU7O95391 586 aaKnown RBP12.93□□□□□ -0.34
CLN6-217ENST00000636964 SKILP12757 684 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 TXKP42681 527 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 PRELPP51888 382 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 SARM1Q6SZW1 724 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 SAMD7Q7Z3H4 446 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 FILIP1Q7Z7B0 1213 aa12.93□□□□□ -0.34
CLN6-217ENST00000636964 IFNKQ9P0W0 207 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms