RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 NR1I3Q14994 352 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 CDKAL1Q5VV42 579 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 CDAN1Q8IWY9 1227 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 NIM1KQ8IY84 436 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 SPICE1Q8N0Z3 855 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 NELFBQ8WX92 580 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 LRWD1Q9UFC0 647 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 HERC5Q9UII4 1024 aaKnown RBP17.61■□□□□ 0.41
CLN3-251ENST00000636853 ZNRF3Q9ULT6 936 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 CNTNAP1P78357 1384 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 TNNT1P13805 278 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 DHX8Q14562 1220 aaKnown RBP17.6■□□□□ 0.41
CLN3-251ENST00000636853 MYRIPQ8NFW9 859 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 FAM151AQ8WW52 585 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 GJA10Q969M2 543 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 GMCL1Q96IK5 515 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 DDX25Q9UHL0 483 aaKnown RBP17.6■□□□□ 0.41
CLN3-251ENST00000636853 RWDD2AQ9UIY3 292 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 ATF5Q9Y2D1 282 aaPredicted RBP17.6■□□□□ 0.41
CLN3-251ENST00000636853 A0A1B0GTH6 734 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 POTEMA6NI47 508 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 TEX33O43247 280 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 TAL1P17542 331 aaPredicted RBP17.6■□□□□ 0.41
CLN3-251ENST00000636853 GTF2F1P35269 517 aaKnown RBP eCLIP17.6■□□□□ 0.41
CLN3-251ENST00000636853 ECE1P42892 770 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 FXR2P51116 673 aaKnown RBP eCLIP17.6■□□□□ 0.41
CLN3-251ENST00000636853 SPDYE2Q495Y8 402 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 CCAR2Q8N163 923 aaKnown RBP17.6■□□□□ 0.41
CLN3-251ENST00000636853 UIMC1Q96RL1 719 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 CUEDC2Q9H467 287 aa17.6■□□□□ 0.41
CLN3-251ENST00000636853 BMP3P12645 472 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 USH1GQ495M9 461 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 PPP4R3AQ6IN85 833 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 CALML4Q96GE6 196 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 PIM2Q9P1W9 311 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 MYL1P05976 194 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 CXCL9Q07325 125 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 TBX2Q13207 712 aaPredicted RBP17.59■□□□□ 0.41
CLN3-251ENST00000636853 GRB10Q13322 594 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 KCNB1Q14721 858 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 TMEM266Q2M3C6 531 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 SYDE2Q5VT97 1194 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 E4F1Q66K89 784 aaPredicted RBP17.59■□□□□ 0.41
CLN3-251ENST00000636853 SPECC1LQ69YQ0 1117 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 TMEM39BQ9GZU3 492 aa17.59■□□□□ 0.41
CLN3-251ENST00000636853 KIF13BQ9NQT8 1826 aa17.58■□□□□ 0.41
CLN3-251ENST00000636853 MIGA2Q7L4E1 593 aa17.58■□□□□ 0.4
CLN3-251ENST00000636853 ACER1Q8TDN7 264 aa17.58■□□□□ 0.4
CLN3-251ENST00000636853 HAS1Q92839 578 aa17.58■□□□□ 0.4
CLN3-251ENST00000636853 NUDT12Q9BQG2 462 aa17.58■□□□□ 0.4
CLN3-251ENST00000636853 TRIM9Q9C026 710 aa17.58■□□□□ 0.4
CLN3-251ENST00000636853 MAGEF1Q9HAY2 307 aa17.58■□□□□ 0.4
CLN3-251ENST00000636853 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.58■□□□□ 0.4
CLN3-251ENST00000636853 TRIM49BA6NDI0 452 aa17.58■□□□□ 0.4
CLN3-251ENST00000636853 KIAA1755Q5JYT7 1200 aa17.58■□□□□ 0.4
CLN3-251ENST00000636853 ADSSL1Q8N142 457 aa17.58■□□□□ 0.4
CLN3-251ENST00000636853 PNMA5Q96PV4 448 aa17.58■□□□□ 0.4
CLN3-251ENST00000636853 AMNQ9BXJ7 453 aa17.58■□□□□ 0.4
CLN3-251ENST00000636853 ADD3Q9UEY8 706 aaKnown RBP17.58■□□□□ 0.4
CLN3-251ENST00000636853 SHTN1A0MZ66 631 aa17.57■□□□□ 0.4
CLN3-251ENST00000636853 MEIS2O14770 477 aa17.57■□□□□ 0.4
CLN3-251ENST00000636853 NRDCO43847 1150 aa17.57■□□□□ 0.4
CLN3-251ENST00000636853 RHOBTB3O94955 611 aa17.57■□□□□ 0.4
CLN3-251ENST00000636853 FBXO11Q86XK2 927 aa17.57■□□□□ 0.4
CLN3-251ENST00000636853 CREBRFQ8IUR6 639 aa17.57■□□□□ 0.4
CLN3-251ENST00000636853 P2RX7Q99572 595 aaKnown RBP17.57■□□□□ 0.4
CLN3-251ENST00000636853 CCDC94Q9BW85 323 aaPredicted RBP17.57■□□□□ 0.4
CLN3-251ENST00000636853 TMX1Q9H3N1 280 aa17.57■□□□□ 0.4
CLN3-251ENST00000636853 SCAF8Q9UPN6 1271 aaKnown RBP17.57■□□□□ 0.4
CLN3-251ENST00000636853 MARCH6O60337 910 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 CCT6AP40227 531 aaKnown RBP17.56■□□□□ 0.4
CLN3-251ENST00000636853 PMS1P54277 932 aaKnown RBP17.56■□□□□ 0.4
CLN3-251ENST00000636853 ADKP55263 362 aaKnown RBP17.56■□□□□ 0.4
CLN3-251ENST00000636853 ASIC1P78348 528 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 AGBL3Q8NEM8 1001 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 C7orf25Q9BPX7 421 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 ANO3Q9BYT9 981 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 RAB34Q9BZG1 259 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 GLT8D2Q9H1C3 349 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 VPS33BQ9H267 617 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 BLOC1S4Q9NUP1 217 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 ZBTB21Q9ULJ3 1066 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 PDIA5Q14554 519 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 NBPF9Q3BBW0 867 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 UTP14CQ5TAP6 766 aaKnown RBP17.56■□□□□ 0.4
CLN3-251ENST00000636853 NYAP1Q6ZVC0 841 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 GIMAP8Q8ND71 665 aaPredicted RBP17.56■□□□□ 0.4
CLN3-251ENST00000636853 SNX29Q8TEQ0 813 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 CDK5RAP3Q96JB5 506 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 ARHGEF10LQ9HCE6 1279 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 KCND1Q9NSA2 647 aa17.56■□□□□ 0.4
CLN3-251ENST00000636853 PPP1R1BQ9UD71 204 aaPredicted RBP17.56■□□□□ 0.4
CLN3-251ENST00000636853 GCFC2P16383 781 aaKnown RBP17.55■□□□□ 0.4
CLN3-251ENST00000636853 TGFB2P61812 414 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 PDE4DQ08499 809 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 MCM6Q14566 821 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 KRT31Q15323 416 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 PTPN14Q15678 1187 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 TC2NQ8N9U0 490 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 CCDC112Q8NEF3 446 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms