RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 KIFC2Q96AC6 838 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 CDCA5Q96FF9 252 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 CLIC6Q96NY7 704 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 SDF4Q9BRK5 362 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 CUEDC2Q9H467 287 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 EMILIN3Q9NT22 766 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.99□□□□□ -0.49
CLN3-248ENST00000636355 BIN2Q9UBW5 565 aaPredicted RBP11.99□□□□□ -0.49
CLN3-248ENST00000636355 AFG3L2Q9Y4W6 797 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 SMCHD1A6NHR9 2005 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 FRMPD4Q14CM0 1322 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 VWA3AA6NCI4 1184 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 SPDYE5A6NIY4 337 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 OPLAHO14841 1288 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 ADAMTS3O15072 1205 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 FLOT1O75955 427 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 CYP3A4P08684 503 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 CIITAP33076 1130 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 HSD17B4P51659 736 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 ZRSR1Q15695 479 aaKnown RBP11.98□□□□□ -0.49
CLN3-248ENST00000636355 UBE2SQ16763 222 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 UVSSAQ2YD98 709 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 TKFCQ3LXA3 575 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 USH1GQ495M9 461 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.98□□□□□ -0.49
CLN3-248ENST00000636355 ARMC9Q7Z3E5 817 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 LDHDQ86WU2 507 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 ERO1BQ86YB8 467 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 SLFN12Q8IYM2 578 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 MB21D1Q8N884 522 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 FAM200AQ8TCP9 573 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 ANP32BQ92688 251 aaKnown RBP11.98□□□□□ -0.49
CLN3-248ENST00000636355 SYMPKQ92797 1274 aaKnown RBP11.98□□□□□ -0.49
CLN3-248ENST00000636355 CCSER1Q9C0I3 900 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 RPAP3Q9H6T3 665 aaPredicted RBP11.98□□□□□ -0.49
CLN3-248ENST00000636355 ANO10Q9NW15 660 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 KIAA1468Q9P260 1216 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 CCPG1Q9ULG6 757 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 ADAMTS5Q9UNA0 930 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 SCAF8Q9UPN6 1271 aaKnown RBP11.98□□□□□ -0.49
CLN3-248ENST00000636355 ZHX2Q9Y6X8 837 aa11.98□□□□□ -0.49
CLN3-248ENST00000636355 ZNF536O15090 1300 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 USP17L15C9J2P7 530 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 USP17L13C9JLJ4 530 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 USP17L11C9JVI0 530 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 USP17L18D6R9N7 530 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 USP17L22D6RA61 530 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 USP17L17D6RBQ6 530 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 USP17L19D6RCP7 530 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 USP17L20D6RJB6 530 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 GCOM1H8Y6P7 765 aaPredicted RBP11.97□□□□□ -0.49
CLN3-248ENST00000636355 CXCL11O14625 94 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 ZBED4O75132 1171 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 SLFN14P0C7P3 912 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 POLR2MP0CAP2 368 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 APLP1P51693 650 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 HMGCS2P54868 508 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 ARHGAP4P98171 946 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 USP17L24Q0WX57 530 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 PPIL2Q13356 520 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 CALCRLQ16602 461 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 IGSF22Q8N9C0 903 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 TRIML1Q8N9V2 468 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 IQUBQ8NA54 791 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 CNNM3Q8NE01 707 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 MTMR9Q96QG7 549 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 DDX25Q9UHL0 483 aaKnown RBP11.97□□□□□ -0.49
CLN3-248ENST00000636355 TUBE1Q9UJT0 475 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 KCNH4Q9UQ05 1017 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 STK24Q9Y6E0 443 aa11.97□□□□□ -0.49
CLN3-248ENST00000636355 VWA5AO00534 786 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 ACTN4O43707 911 aaKnown RBP11.96□□□□□ -0.49
CLN3-248ENST00000636355 SETQ01105 290 aaPredicted RBP11.96□□□□□ -0.49
CLN3-248ENST00000636355 PDIA5Q14554 519 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 CAMK4Q16566 473 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 Q4G0T1 1027 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 COL13A1Q5TAT6 717 aaPredicted RBP11.96□□□□□ -0.49
CLN3-248ENST00000636355 NT5DC1Q5TFE4 455 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 LBX2Q6XYB7 198 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 CCDC84Q86UT8 332 aaPredicted RBP11.96□□□□□ -0.49
CLN3-248ENST00000636355 POTEDQ86YR6 584 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 CEP57L1Q8IYX8 460 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 TNS4Q8IZW8 715 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 KCTD17Q8N5Z5 321 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 NAT10Q9H0A0 1025 aaKnown RBP11.96□□□□□ -0.49
CLN3-248ENST00000636355 TMEM60Q9H2L4 133 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 KCNMB3Q9NPA1 279 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 DISC1Q9NRI5 854 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 FBXO28Q9NVF7 368 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 TMEM260Q9NX78 707 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 CCDC39Q9UFE4 941 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 CTDP1Q9Y5B0 961 aaPredicted RBP11.96□□□□□ -0.49
CLN3-248ENST00000636355 MRVI1Q9Y6F6 885 aa11.96□□□□□ -0.49
CLN3-248ENST00000636355 UTRNP46939 3433 aa11.96□□□□□ -0.5
CLN3-248ENST00000636355 RPTORQ8N122 1335 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 KDM3AQ9Y4C1 1321 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 A0A0G2JLL6 359 aaPredicted RBP11.95□□□□□ -0.5
CLN3-248ENST00000636355 POTECB2RU33 542 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 POLR2DO15514 142 aaKnown RBP11.95□□□□□ -0.5
CLN3-248ENST00000636355 HOXA7P31268 230 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms